Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:10:34 (28546): wrapper (7.7.26015): starting
18:10:34 (28546): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 18:10:34] Arguments: --nthreads 8
[2025-11-30 18:10:34] Threads: 8
[2025-11-30 18:10:34] Checking for CVMFS
[2025-11-30 18:10:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 18:10:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 18:10:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 18:10:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 18:10:37] 2.11.2.0 13466 291392 139000 153488 1 20 20415890 25165824 2504 130560 11 142066818 99.866 89045079 3410 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 18:10:37] CVMFS is ok
[2025-11-30 18:10:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 18:10:37] Checking for apptainer binary...
[2025-11-30 18:10:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 18:10:37] Running /usr/bin/apptainer --version
[2025-11-30 18:10:37] apptainer version 1.3.2-1.el7
[2025-11-30 18:10:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 18:10:48] cg-vwn493.simple-grid.lan
[2025-11-30 18:10:48] apptainer works
[2025-11-30 18:10:48] Set ATHENA_PROC_NUMBER=8
[2025-11-30 18:10:48] Set ATHENA_CORE_NUMBER=8
[2025-11-30 18:10:48] Starting ATLAS job with PandaID=6901020652
[2025-11-30 18:10:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:18:05]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:18:05] 2025-12-01 15:17:16,812 | INFO     | monitor loop #5327: job 0:6901020652 is in state 'finished'
[2025-12-01 16:18:05] 2025-12-01 15:17:16,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:18:05] 2025-12-01 15:17:18,312 | INFO     | time since job start (79371s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:19,317 | INFO     | monitor loop #5328: job 0:6901020652 is in state 'finished'
[2025-12-01 16:18:05] 2025-12-01 15:17:19,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:18:05] 2025-12-01 15:17:20,320 | INFO     | time since job start (79373s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:21,822 | INFO     | monitor loop #5329: job 0:6901020652 is in state 'finished'
[2025-12-01 16:18:05] 2025-12-01 15:17:21,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:18:05] 2025-12-01 15:17:22,330 | INFO     | time since job start (79375s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:24,329 | INFO     | monitor loop #5330: job 0:6901020652 is in state 'finished'
[2025-12-01 16:18:05] 2025-12-01 15:17:24,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:18:05] 2025-12-01 15:17:24,344 | INFO     | time since job start (79377s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:26,351 | INFO     | time since job start (79379s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:26,842 | INFO     | monitor loop #5331: job 0:6901020652 is in state 'finished'
[2025-12-01 16:18:05] 2025-12-01 15:17:26,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:18:05] 2025-12-01 15:17:28,358 | INFO     | time since job start (79381s) is within the limit (172800.0s)
[2025-12-01 16:18:05] 2025-12-01 15:17:28,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 16:18:05] 2025-12-01 15:17:28,859 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 16:18:05] 2025-12-01 15:17:28,861 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6901020652/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:18:05] 2025-12-01 15:17:28,861 | INFO     | extracted standard info from prmon json
[2025-12-01 16:18:05] 2025-12-01 15:17:28,861 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:18:05] 2025-12-01 15:17:28,861 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:18:05] 2025-12-01 15:17:28,893 | INFO     | fitting pss+swap vs Time
[2025-12-01 16:18:05] 2025-12-01 15:17:28,895 | INFO     | sum of square deviations: 668751796222.1699
[2025-12-01 16:18:05] 2025-12-01 15:17:28,989 | INFO     | sum of deviations: 2495928271373.04
[2025-12-01 16:18:05] 2025-12-01 15:17:28,989 | INFO     | mean x: 1764562732.5611455
[2025-12-01 16:18:05] 2025-12-01 15:17:28,989 | INFO     | mean y: 2827090.73374613
[2025-12-01 16:18:05] 2025-12-01 15:17:28,990 | INFO     | intersect: -6582907759.909519
[2025-12-01 16:18:05] 2025-12-01 15:17:28,991 | INFO     | chi2: 25.56282708829438
[2025-12-01 16:18:05] 2025-12-01 15:17:28,993 | INFO     | sum of square deviations: 661018060056.5176
[2025-12-01 16:18:05] 2025-12-01 15:17:29,062 | INFO     | sum of deviations: 2937886302677.6978
[2025-12-01 16:18:05] 2025-12-01 15:17:29,063 | INFO     | mean x: 1764562580.065268
[2025-12-01 16:18:05] 2025-12-01 15:17:29,063 | INFO     | mean y: 2835805.0155400154
[2025-12-01 16:18:05] 2025-12-01 15:17:29,063 | INFO     | intersect: -7839739984.438876
[2025-12-01 16:18:05] 2025-12-01 15:17:29,064 | INFO     | chi2: 22.11153682092533
[2025-12-01 16:18:05] 2025-12-01 15:17:29,064 | INFO     | current chi2=22.11153682092533 (change=13.501207262593617 %)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,064 | INFO     | right removable region: 1286
[2025-12-01 16:18:05] 2025-12-01 15:17:29,066 | INFO     | sum of square deviations: 661017223746.5173
[2025-12-01 16:18:05] 2025-12-01 15:17:29,109 | INFO     | sum of deviations: 1958532741558.1057
[2025-12-01 16:18:05] 2025-12-01 15:17:29,110 | INFO     | mean x: 1764562885.065268
[2025-12-01 16:18:05] 2025-12-01 15:17:29,110 | INFO     | mean y: 2837685.951048951
[2025-12-01 16:18:05] 2025-12-01 15:17:29,110 | INFO     | intersect: -5225398524.522987
[2025-12-01 16:18:05] 2025-12-01 15:17:29,111 | INFO     | chi2: 20.86878595894374
[2025-12-01 16:18:05] 2025-12-01 15:17:29,112 | INFO     | current chi2=20.86878595894374 (change=18.36276211992263 %)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,112 | INFO     | left removable region: 10
[2025-12-01 16:18:05] 2025-12-01 15:17:29,113 | INFO     | sum of square deviations: 644212553211.9314
[2025-12-01 16:18:05] 2025-12-01 15:17:29,201 | INFO     | sum of deviations: 2022146679628.6482
[2025-12-01 16:18:05] 2025-12-01 15:17:29,201 | INFO     | mean x: 1764562854.5744514
[2025-12-01 16:18:05] 2025-12-01 15:17:29,202 | INFO     | mean y: 2858111.461598746
[2025-12-01 16:18:05] 2025-12-01 15:17:29,206 | INFO     | intersect: -5536004643.669963
[2025-12-01 16:18:05] 2025-12-01 15:17:29,208 | INFO     | chi2: 12.842595265937717
[2025-12-01 16:18:05] 2025-12-01 15:17:29,208 | INFO     | current memory leak: 3.14 B/s (using 1276 data points, chi2=12.84)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,209 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | ..............................
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . Timing measurements:
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . get job = 0 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . initial setup = 11 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . payload setup = 145 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . stage-in = 0 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . payload execution = 78939 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . stage-out = 5 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,210 | INFO     | . log creation = 2 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,211 | INFO     | ..............................
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | job summary report
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | --------------------------------------------------
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | PanDA job id: 6901020652
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | task id: 47556185
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | errors: (none)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | pilot state: finished 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | transexitcode: 0
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | exeerrorcode: 0
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | exeerrordiag: 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | exitcode: 0
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | exitmsg: OK
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | cpuconsumptiontime: 293418 s
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | nevents: 1000
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | neventsw: 0
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | pid: 6610
[2025-12-01 16:18:05] 2025-12-01 15:17:29,433 | INFO     | pgrp: 6610
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | corecount: 8
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | event service: False
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | sizes: {0: 2284083, 1: 2284338, 12: 2284338, 23: 2284366, 33: 2284394, 44: 2284450, 55: 2284606, 66: 2284634, 76: 2284662, 87: 2284718, 98: 2285288, 109: 2285316, 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | --------------------------------------------------
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | 
[2025-12-01 16:18:05] 2025-12-01 15:17:29,434 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-12-01 16:18:05] 2025-12-01 15:17:29,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:18:05] 2025-12-01 15:17:29,936 | INFO     | job 6901020652 has completed (purged errors)
[2025-12-01 16:18:05] 2025-12-01 15:17:29,937 | INFO     | overall cleanup function is called
[2025-12-01 16:18:05] 2025-12-01 15:17:30,958 | INFO     | --- collectZombieJob: --- 10, [6610]
[2025-12-01 16:18:05] 2025-12-01 15:17:30,958 | INFO     | zombie collector waiting for pid 6610
[2025-12-01 16:18:05] 2025-12-01 15:17:30,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:18:05] 2025-12-01 15:17:30,958 | INFO     | collected zombie processes
[2025-12-01 16:18:05] 2025-12-01 15:17:30,958 | INFO     | will attempt to kill all subprocesses of pid=6610
[2025-12-01 16:18:05] 2025-12-01 15:17:31,080 | INFO     | process IDs to be killed: [6610] (in reverse order)
[2025-12-01 16:18:05] 2025-12-01 15:17:32,079 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:18:05] 2025-12-01 15:17:32,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:18:05] 2025-12-01 15:17:32,087 | INFO     | did not find any defunct processes belonging to 6610
[2025-12-01 16:18:05] 2025-12-01 15:17:32,089 | INFO     | did not find any defunct processes belonging to 6610
[2025-12-01 16:18:05] 2025-12-01 15:17:32,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:18:05] 2025-12-01 15:17:32,133 | INFO     | ready for new job
[2025-12-01 16:18:05] 2025-12-01 15:17:32,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:18:05] 2025-12-01 15:17:32,138 | INFO     | ***************************************
[2025-12-01 16:18:05] 2025-12-01 15:17:32,138 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:18:05] 2025-12-01 15:17:32,138 | INFO     | ***************************************
[2025-12-01 16:18:05] 2025-12-01 15:17:32,138 | INFO     | 
[2025-12-01 16:18:05] 2025-12-01 15:17:32,139 | INFO     | pilot is running in a VM
[2025-12-01 16:18:05] 2025-12-01 15:17:32,139 | INFO     | architecture information:
[2025-12-01 16:18:05] 2025-12-01 15:17:32,144 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:18:05] 2025-12-01 15:17:32,292 | INFO     | cat /etc/os-release:
[2025-12-01 16:18:05] NAME="CentOS Linux"
[2025-12-01 16:18:05] VERSION="7 (Core)"
[2025-12-01 16:18:05] ID="centos"
[2025-12-01 16:18:05] ID_LIKE="rhel fedora"
[2025-12-01 16:18:05] VERSION_ID="7"
[2025-12-01 16:18:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:18:05] ANSI_COLOR="0;31"
[2025-12-01 16:18:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:18:05] HOME_URL="https://www.centos.org/"
[2025-12-01 16:18:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:18:05] 
[2025-12-01 16:18:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:18:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:18:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:18:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:18:05] 
[2025-12-01 16:18:05] 2025-12-01 15:17:32,293 | INFO     | ***************************************
[2025-12-01 16:18:05] 2025-12-01 15:17:32,796 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-12-01 16:18:05] 2025-12-01 15:17:33,029 | INFO     | sufficient remaining disk space (489031729152 B)
[2025-12-01 16:18:05] 2025-12-01 15:17:33,030 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:18:05] 2025-12-01 15:17:33,030 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:18:05] 2025-12-01 15:17:33,030 | INFO     | update_server=False
[2025-12-01 16:18:05] 2025-12-01 15:17:33,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:18:05] 2025-12-01 15:17:33,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:18:05] 2025-12-01 15:17:33,031 | INFO     | aborting loop
[2025-12-01 16:18:05] 2025-12-01 15:17:33,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:18:05] 2025-12-01 15:17:33,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:18:05] 2025-12-01 15:17:33,395 | INFO     | all data control threads have been joined
[2025-12-01 16:18:05] 2025-12-01 15:17:33,720 | INFO     | all job control threads have been joined
[2025-12-01 16:18:05] 2025-12-01 15:17:34,035 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,037 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:18:05] 2025-12-01 15:17:34,401 | INFO     | [data] control thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,415 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,431 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,528 | INFO     | all payload control threads have been joined
[2025-12-01 16:18:05] 2025-12-01 15:17:34,600 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,622 | INFO     | [job] validate thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,726 | INFO     | [job] control thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,736 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:34,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:35,040 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:35,075 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:35,351 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:35,436 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:35,534 | INFO     | [payload] control thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:37,044 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:18:05] 2025-12-01 15:17:44,805 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:18:05] 2025-12-01 15:17:46,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583620699968)>', '<ExcThread(monitor, started 140583179896576)>']
[2025-12-01 16:18:05] 2025-12-01 15:17:51,587 | INFO     | all workflow threads have been joined
[2025-12-01 16:18:05] 2025-12-01 15:17:51,587 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:18:05] 2025-12-01 15:17:51,587 | INFO     | traces error code: 0
[2025-12-01 16:18:05] 2025-12-01 15:17:51,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:18:05] 2025-12-01 15:18:01,537 | INFO     | PID=32407 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 16:18:05] 2025-12-01 15:18:01,537 | INFO     | .. there are 9 such processes running
[2025-12-01 16:18:05] 2025-12-01 15:18:01,538 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:18:05] 2025-12-01 15:18:01,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:18:05] 2025-12-01 15:18:01,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:18:05] 2025-12-01 15:18:01,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:18:05] 2025-12-01 15:18:01,539 | INFO     | [monitor] control thread has ended
[2025-12-01 16:18:05] 2025-12-01 15:18:01,837 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:18:05] 2025-12-01 15:18:01,948 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:18:05] 2025-12-01 15:18:02,062 [wrapper] pilotpid: 32407
[2025-12-01 16:18:05] 2025-12-01 15:18:02,138 [wrapper] Pilot exit status: 0
[2025-12-01 16:18:05] 2025-12-01 15:18:02,390 [wrapper] pandaids: 6901020652
[2025-12-01 16:18:05] 2025-12-01 15:18:02,906 [wrapper] cleanup supervisor_pilot  5592 32408
[2025-12-01 16:18:05] 2025-12-01 15:18:02,999 [wrapper] Test setup, not cleaning
[2025-12-01 16:18:05] 2025-12-01 15:18:03,049 [wrapper] apfmon messages muted
[2025-12-01 16:18:05] 2025-12-01 15:18:03,125 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:18:05] 2025-12-01 15:18:03,240 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:18:05]  *** Error codes and diagnostics ***
[2025-12-01 16:18:05]     "exeErrorCode": 0,
[2025-12-01 16:18:05]     "exeErrorDiag": "",
[2025-12-01 16:18:05]     "pilotErrorCode": 0,
[2025-12-01 16:18:05]     "pilotErrorDiag": "",
[2025-12-01 16:18:05]  *** Listing of results directory ***
[2025-12-01 16:18:05] total 1331604
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-01 16:18:05] -rwx------. 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:04 queuedata.json
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc       100 Nov 30 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:18:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 18:10 run_atlas
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc       105 Nov 30 18:10 job.xml
[2025-12-01 16:18:05] -rw-r--r--. 2 boinc boinc 411029469 Nov 30 18:10 EVNT.47483658._004536.pool.root.1
[2025-12-01 16:18:05] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:10 start_atlas.sh
[2025-12-01 16:18:05] drwxrwx--x. 2 boinc boinc        68 Nov 30 18:10 shared
[2025-12-01 16:18:05] -rw-r--r--. 2 boinc boinc    590106 Nov 30 18:10 input.tar.gz
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc      6391 Nov 30 18:10 init_data.xml
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc         0 Nov 30 18:10 boinc_lockfile
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc      2784 Nov 30 18:10 pandaJob.out
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc    991799 Nov 30 18:14 agis_schedconf.cvmfs.json
[2025-12-01 16:18:05] drwx------. 5 boinc boinc      4096 Nov 30 18:14 pilot3
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc       533 Dec  1 15:50 boinc_task_state.xml
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc 922721619 Dec  1 16:14 HITS.47556185._002991.pool.root.1
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc      1032 Dec  1 16:15 memory_monitor_summary.json
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc   1516240 Dec  1 16:15 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc   2397235 Dec  1 16:15 log.47556185._002991.job.log.tgz.1
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc      8625 Dec  1 16:17 heartbeat.json
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc        29 Dec  1 16:17 wrapper_checkpoint.txt
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc      8192 Dec  1 16:17 boinc_mmap_file
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc        95 Dec  1 16:18 pilot_heartbeat.json
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc       820 Dec  1 16:18 pilotlog.txt
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc  10558350 Dec  1 16:18 log.47556185._002991.job.log.1
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc       353 Dec  1 16:18 output.list
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc       620 Dec  1 16:18 runtime_log
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc  12974080 Dec  1 16:18 result.tar.gz
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc      8817 Dec  1 16:18 runtime_log.err
[2025-12-01 16:18:05] -rw-------. 1 boinc boinc       662 Dec  1 16:18 kXpLDmB21i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7HOKDmofZO8n.diag
[2025-12-01 16:18:05] -rw-r--r--. 1 boinc boinc     21429 Dec  1 16:18 stderr.txt
[2025-12-01 16:18:06] HITS file was successfully produced:
[2025-12-01 16:18:06] -rw-------. 1 boinc boinc 922721619 Dec  1 16:14 shared/HITS.pool.root.1
[2025-12-01 16:18:06]  *** Contents of shared directory: ***
[2025-12-01 16:18:06] total 1315760
[2025-12-01 16:18:06] -rw-r--r--. 2 boinc boinc 411029469 Nov 30 18:10 ATLAS.root_0
[2025-12-01 16:18:06] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:10 start_atlas.sh
[2025-12-01 16:18:06] -rw-r--r--. 2 boinc boinc    590106 Nov 30 18:10 input.tar.gz
[2025-12-01 16:18:06] -rw-------. 1 boinc boinc 922721619 Dec  1 16:14 HITS.pool.root.1
[2025-12-01 16:18:06] -rw-------. 1 boinc boinc  12974080 Dec  1 16:18 result.tar.gz
16:18:07 (28546): run_atlas exited; CPU time 293933.694099
16:18:07 (28546): called boinc_finish(0)

</stderr_txt>
]]>

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