Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:37 (3787163): wrapper (7.7.26015): starting
14:22:37 (3787163): wrapper: running run_atlas (--nthreads 2)
[2025-12-01 14:22:37] Arguments: --nthreads 2
[2025-12-01 14:22:37] Threads: 2
[2025-12-01 14:22:37] Checking for CVMFS
[2025-12-01 14:22:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 14:22:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 14:22:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 14:22:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 14:22:37] 2.9.2.0 1656350 18349 64052 153519 3 81 32955679 36864000 0 130560 0 5902831 99.898 931879 1719 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-01 14:22:37] CVMFS is ok
[2025-12-01 14:22:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 14:22:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 14:22:37] Further information can be found at the LHC@home message board.
[2025-12-01 14:22:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 14:22:37] Checking for apptainer binary...
[2025-12-01 14:22:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 14:22:37] Running /usr/bin/apptainer --version
[2025-12-01 14:22:37] apptainer version 1.4.1-1.1
[2025-12-01 14:22:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 14:22:37] thA314b
[2025-12-01 14:22:37] apptainer works
[2025-12-01 14:22:37] Set ATHENA_PROC_NUMBER=2
[2025-12-01 14:22:37] Set ATHENA_CORE_NUMBER=2
[2025-12-01 14:22:37] Starting ATLAS job with PandaID=6900989166
[2025-12-01 14:22:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:28:04]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:28:04] 2025-12-02 01:27:33,354 | INFO     | will attempt to kill all subprocesses of pid=3797287
[2025-12-02 02:28:04] 2025-12-02 01:27:33,387 | INFO     | process IDs to be killed: [3797287] (in reverse order)
[2025-12-02 02:28:04] 2025-12-02 01:27:33,408 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:28:04] 2025-12-02 01:27:33,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:28:04] 2025-12-02 01:27:33,409 | INFO     | did not find any defunct processes belonging to 3797287
[2025-12-02 02:28:04] 2025-12-02 01:27:33,409 | INFO     | did not find any defunct processes belonging to 3797287
[2025-12-02 02:28:04] 2025-12-02 01:27:33,410 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:28:04] 2025-12-02 01:27:33,410 | INFO     | ready for new job
[2025-12-02 02:28:04] 2025-12-02 01:27:33,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:28:04] 2025-12-02 01:27:33,411 | INFO     | ***************************************
[2025-12-02 02:28:04] 2025-12-02 01:27:33,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:28:04] 2025-12-02 01:27:33,411 | INFO     | ***************************************
[2025-12-02 02:28:04] 2025-12-02 01:27:33,411 | INFO     | 
[2025-12-02 02:28:04] 2025-12-02 01:27:33,411 | INFO     | architecture information:
[2025-12-02 02:28:04] 2025-12-02 01:27:33,412 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:28:04] 2025-12-02 01:27:33,420 | INFO     | cat /etc/os-release:
[2025-12-02 02:28:04] NAME="CentOS Linux"
[2025-12-02 02:28:04] VERSION="7 (Core)"
[2025-12-02 02:28:04] ID="centos"
[2025-12-02 02:28:04] ID_LIKE="rhel fedora"
[2025-12-02 02:28:04] VERSION_ID="7"
[2025-12-02 02:28:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:28:04] ANSI_COLOR="0;31"
[2025-12-02 02:28:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:28:04] HOME_URL="https://www.centos.org/"
[2025-12-02 02:28:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:28:04] 
[2025-12-02 02:28:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:28:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:28:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:28:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:28:04] 
[2025-12-02 02:28:04] 2025-12-02 01:27:33,420 | INFO     | ***************************************
[2025-12-02 02:28:04] 2025-12-02 01:27:33,923 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-02 02:28:04] 2025-12-02 01:27:33,955 | INFO     | sufficient remaining disk space (488554627072 B)
[2025-12-02 02:28:04] 2025-12-02 01:27:33,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:28:04] 2025-12-02 01:27:33,956 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:28:04] 2025-12-02 01:27:33,956 | INFO     | update_server=False
[2025-12-02 02:28:04] 2025-12-02 01:27:33,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:28:04] 2025-12-02 01:27:33,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:28:04] 2025-12-02 01:27:33,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:28:04] 2025-12-02 01:27:33,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:28:04] 2025-12-02 01:27:34,224 | INFO     | all data control threads have been joined
[2025-12-02 02:28:04] 2025-12-02 01:27:34,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:28:04] 2025-12-02 01:27:34,239 | INFO     | aborting loop
[2025-12-02 02:28:04] 2025-12-02 01:27:34,960 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:34,963 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:34,970 | INFO     | [job] validate thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,230 | INFO     | [data] control thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,245 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,433 | INFO     | all job control threads have been joined
[2025-12-02 02:28:04] 2025-12-02 01:27:35,437 | INFO     | all payload control threads have been joined
[2025-12-02 02:28:04] 2025-12-02 01:27:35,606 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,627 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,658 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,699 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,782 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:35,962 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:36,081 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:36,360 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:36,439 | INFO     | [job] control thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:36,443 | INFO     | [payload] control thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:37,964 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:28:04] 2025-12-02 01:27:52,949 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:28:04] 2025-12-02 01:27:54,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056544175936)>', '<ExcThread(monitor, started 140056014591744)>']
[2025-12-02 02:28:04] 2025-12-02 01:27:59,849 | INFO     | all workflow threads have been joined
[2025-12-02 02:28:04] 2025-12-02 01:27:59,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:28:04] 2025-12-02 01:27:59,850 | INFO     | traces error code: 0
[2025-12-02 02:28:04] 2025-12-02 01:27:59,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:28:04] 2025-12-02 01:28:04,024 | INFO     | PID=3790868 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 02:28:04] 2025-12-02 01:28:04,025 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:28:04] 2025-12-02 01:28:04,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:28:04] 2025-12-02 01:28:04,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:28:04] 2025-12-02 01:28:04,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:28:04] 2025-12-02 01:28:04,025 | INFO     | [monitor] control thread has ended
[2025-12-02 02:28:04] 2025-12-02 01:28:04,065 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:28:04] 2025-12-02 01:28:04,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:28:04] 2025-12-02 01:28:04,069 [wrapper] pilotpid: 3790868
[2025-12-02 02:28:04] 2025-12-02 01:28:04,071 [wrapper] Pilot exit status: 0
[2025-12-02 02:28:04] 2025-12-02 01:28:04,077 [wrapper] pandaids: 6900989166
[2025-12-02 02:28:04] 2025-12-02 01:28:04,090 [wrapper] cleanup supervisor_pilot 3866055 3790869
[2025-12-02 02:28:04] 2025-12-02 01:28:04,092 [wrapper] Test setup, not cleaning
[2025-12-02 02:28:04] 2025-12-02 01:28:04,094 [wrapper] apfmon messages muted
[2025-12-02 02:28:04] 2025-12-02 01:28:04,096 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:28:04] 2025-12-02 01:28:04,099 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:28:04]  *** Error codes and diagnostics ***
[2025-12-02 02:28:04]     "exeErrorCode": 0,
[2025-12-02 02:28:04]     "exeErrorDiag": "",
[2025-12-02 02:28:04]     "pilotErrorCode": 0,
[2025-12-02 02:28:04]     "pilotErrorDiag": "",
[2025-12-02 02:28:04]  *** Listing of results directory ***
[2025-12-02 02:28:04] total 1317736
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 02:28:04] -rwx------ 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc      5112 Nov 28 02:04 queuedata.json
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc       100 Dec  1 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:28:04] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 14:22 run_atlas
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc       105 Dec  1 14:22 job.xml
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc 410404000 Dec  1 14:22 EVNT.47483658._004525.pool.root.1
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc    590106 Dec  1 14:22 input.tar.gz
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc     15847 Dec  1 14:22 start_atlas.sh
[2025-12-02 02:28:04] drwxrwx--x 2 boinc boinc      4096 Dec  1 14:22 shared
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc         0 Dec  1 14:22 boinc_setup_complete
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc      6208 Dec  1 14:22 init_data.xml
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc         0 Dec  1 14:22 boinc_lockfile
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc      2787 Dec  1 14:22 pandaJob.out
[2025-12-02 02:28:04] -rw------- 1 boinc boinc    992150 Dec  1 14:22 agis_schedconf.cvmfs.json
[2025-12-02 02:28:04] drwx------ 5 boinc boinc      4096 Dec  1 14:22 pilot3
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc       532 Dec  2 02:23 boinc_task_state.xml
[2025-12-02 02:28:04] -rw------- 1 boinc boinc 920408604 Dec  2 02:27 HITS.47556185._002885.pool.root.1
[2025-12-02 02:28:04] -rw------- 1 boinc boinc        95 Dec  2 02:27 pilot_heartbeat.json
[2025-12-02 02:28:04] -rw------- 1 boinc boinc      1023 Dec  2 02:27 memory_monitor_summary.json
[2025-12-02 02:28:04] -rw------- 1 boinc boinc   1516240 Dec  2 02:27 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:28:04] -rw------- 1 boinc boinc   1215437 Dec  2 02:27 log.47556185._002885.job.log.tgz.1
[2025-12-02 02:28:04] -rw------- 1 boinc boinc      8561 Dec  2 02:27 heartbeat.json
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc      8192 Dec  2 02:27 boinc_mmap_file
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc        28 Dec  2 02:27 wrapper_checkpoint.txt
[2025-12-02 02:28:04] -rw------- 1 boinc boinc       747 Dec  2 02:28 pilotlog.txt
[2025-12-02 02:28:04] -rw------- 1 boinc boinc   6103500 Dec  2 02:28 log.47556185._002885.job.log.1
[2025-12-02 02:28:04] -rw------- 1 boinc boinc       353 Dec  2 02:28 output.list
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc       620 Dec  2 02:28 runtime_log
[2025-12-02 02:28:04] -rw------- 1 boinc boinc   7342080 Dec  2 02:28 result.tar.gz
[2025-12-02 02:28:04] -rw------- 1 boinc boinc       666 Dec  2 02:28 mWNNDmA21i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmr4KKDmJiKxHn.diag
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc      8903 Dec  2 02:28 runtime_log.err
[2025-12-02 02:28:04] -rw-r--r-- 1 boinc boinc     10421 Dec  2 02:28 stderr.txt
[2025-12-02 02:28:04] HITS file was successfully produced:
[2025-12-02 02:28:04] -rw------- 1 boinc boinc 920408604 Dec  2 02:27 shared/HITS.pool.root.1
[2025-12-02 02:28:04]  *** Contents of shared directory: ***
[2025-12-02 02:28:04] total 1307404
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc 410404000 Dec  1 14:22 ATLAS.root_0
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc    590106 Dec  1 14:22 input.tar.gz
[2025-12-02 02:28:04] -rw-r--r-- 2 boinc boinc     15847 Dec  1 14:22 start_atlas.sh
[2025-12-02 02:28:04] -rw------- 1 boinc boinc 920408604 Dec  2 02:27 HITS.pool.root.1
[2025-12-02 02:28:04] -rw------- 1 boinc boinc   7342080 Dec  2 02:28 result.tar.gz
02:28:05 (3787163): run_atlas exited; CPU time 86177.294492
02:28:05 (3787163): called boinc_finish(0)

</stderr_txt>
]]>

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