Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:11:59 (27357): wrapper (7.7.26015): starting
22:11:59 (27357): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 22:11:59] Arguments: --nthreads 8
[2025-11-30 22:11:59] Threads: 8
[2025-11-30 22:11:59] Checking for CVMFS
[2025-11-30 22:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 22:12:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 22:12:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 22:12:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 22:12:02] 2.11.2.0 19872 291501 140624 153493 1 85 17585486 25165824 2504 130560 25 123998341 99.873 79975430 2571 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 22:12:02] CVMFS is ok
[2025-11-30 22:12:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 22:12:02] Checking for apptainer binary...
[2025-11-30 22:12:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 22:12:02] Running /usr/bin/apptainer --version
[2025-11-30 22:12:02] apptainer version 1.3.2-1.el7
[2025-11-30 22:12:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 22:12:08] cg-vwn350.simple-grid.lan
[2025-11-30 22:12:08] apptainer works
[2025-11-30 22:12:08] Set ATHENA_PROC_NUMBER=8
[2025-11-30 22:12:08] Set ATHENA_CORE_NUMBER=8
[2025-11-30 22:12:09] Starting ATLAS job with PandaID=6900988994
[2025-11-30 22:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 21:58:39]  *** The last 200 lines of the pilot log: ***
[2025-12-01 21:58:39] 2025-12-01 20:57:20,975 | INFO     | time since job start (85277s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:22,851 | INFO     | monitor loop #5703: job 0:6900988994 is in state 'finished'
[2025-12-01 21:58:39] 2025-12-01 20:57:22,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:58:39] 2025-12-01 20:57:22,985 | INFO     | time since job start (85279s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:24,992 | INFO     | time since job start (85281s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:25,355 | INFO     | monitor loop #5704: job 0:6900988994 is in state 'finished'
[2025-12-01 21:58:39] 2025-12-01 20:57:25,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:58:39] 2025-12-01 20:57:27,005 | INFO     | time since job start (85284s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:27,860 | INFO     | monitor loop #5705: job 0:6900988994 is in state 'finished'
[2025-12-01 21:58:39] 2025-12-01 20:57:27,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:58:39] 2025-12-01 20:57:29,011 | INFO     | time since job start (85286s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:30,367 | INFO     | monitor loop #5706: job 0:6900988994 is in state 'finished'
[2025-12-01 21:58:39] 2025-12-01 20:57:30,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:58:39] 2025-12-01 20:57:31,019 | INFO     | time since job start (85288s) is within the limit (172800.0s)
[2025-12-01 21:58:39] 2025-12-01 20:57:31,759 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 21:58:39] 2025-12-01 20:57:31,765 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 21:58:39] 2025-12-01 20:57:31,768 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6900988994/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 21:58:39] 2025-12-01 20:57:31,768 | INFO     | extracted standard info from prmon json
[2025-12-01 21:58:39] 2025-12-01 20:57:31,769 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 21:58:39] 2025-12-01 20:57:31,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 21:58:39] 2025-12-01 20:57:31,796 | INFO     | fitting pss+swap vs Time
[2025-12-01 21:58:39] 2025-12-01 20:57:31,798 | INFO     | sum of square deviations: 830967730632.6372
[2025-12-01 21:58:39] 2025-12-01 20:57:31,879 | INFO     | sum of deviations: 2895213199772.891
[2025-12-01 21:58:39] 2025-12-01 20:57:31,879 | INFO     | mean x: 1764580222.1180706
[2025-12-01 21:58:39] 2025-12-01 20:57:31,880 | INFO     | mean y: 2834111.5737940962
[2025-12-01 21:58:39] 2025-12-01 20:57:31,880 | INFO     | intersect: -6145221658.588219
[2025-12-01 21:58:39] 2025-12-01 20:57:31,881 | INFO     | chi2: 25.405326437961094
[2025-12-01 21:58:39] 2025-12-01 20:57:31,883 | INFO     | sum of square deviations: 822026715711.3632
[2025-12-01 21:58:39] 2025-12-01 20:57:31,947 | INFO     | sum of deviations: 3364274545162.5854
[2025-12-01 21:58:39] 2025-12-01 20:57:31,947 | INFO     | mean x: 1764580069.62211
[2025-12-01 21:58:39] 2025-12-01 20:57:31,947 | INFO     | mean y: 2842110.7716763006
[2025-12-01 21:58:39] 2025-12-01 20:57:31,948 | INFO     | intersect: -7218981338.109238
[2025-12-01 21:58:39] 2025-12-01 20:57:31,949 | INFO     | chi2: 22.011506939617778
[2025-12-01 21:58:39] 2025-12-01 20:57:31,950 | INFO     | current chi2=22.011506939617778 (change=13.358692739614671 %)
[2025-12-01 21:58:39] 2025-12-01 20:57:31,950 | INFO     | right removable region: 1383
[2025-12-01 21:58:39] 2025-12-01 20:57:31,952 | INFO     | sum of square deviations: 822025768381.3628
[2025-12-01 21:58:39] 2025-12-01 20:57:32,028 | INFO     | sum of deviations: 2317521356478.178
[2025-12-01 21:58:39] 2025-12-01 20:57:32,028 | INFO     | mean x: 1764580374.62211
[2025-12-01 21:58:39] 2025-12-01 20:57:32,029 | INFO     | mean y: 2843963.262283237
[2025-12-01 21:58:39] 2025-12-01 20:57:32,029 | INFO     | intersect: -4972003372.073051
[2025-12-01 21:58:39] 2025-12-01 20:57:32,030 | INFO     | chi2: 20.75027777208435
[2025-12-01 21:58:39] 2025-12-01 20:57:32,031 | INFO     | current chi2=20.75027777208435 (change=18.323120851228612 %)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,031 | INFO     | left removable region: 10
[2025-12-01 21:58:39] 2025-12-01 20:57:32,033 | INFO     | sum of square deviations: 802580854792.3997
[2025-12-01 21:58:39] 2025-12-01 20:57:32,093 | INFO     | sum of deviations: 2404219145258.077
[2025-12-01 21:58:39] 2025-12-01 20:57:32,094 | INFO     | mean x: 1764580344.1310997
[2025-12-01 21:58:39] 2025-12-01 20:57:32,094 | INFO     | mean y: 2862291.5273124543
[2025-12-01 21:58:39] 2025-12-01 20:57:32,094 | INFO     | intersect: -5283132037.110704
[2025-12-01 21:58:39] 2025-12-01 20:57:32,096 | INFO     | chi2: 13.260972897720368
[2025-12-01 21:58:39] 2025-12-01 20:57:32,096 | INFO     | current memory leak: 3.00 B/s (using 1373 data points, chi2=13.26)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,097 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,097 | INFO     | ..............................
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . Timing measurements:
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . get job = 0 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . initial setup = 6 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . payload setup = 166 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . stage-in = 0 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . payload execution = 84829 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . stage-out = 3 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | . log creation = 1 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,098 | INFO     | ..............................
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | 
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | job summary report
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | --------------------------------------------------
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | PanDA job id: 6900988994
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | task id: 47556185
[2025-12-01 21:58:39] 2025-12-01 20:57:32,219 | INFO     | errors: (none)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | pilot state: finished 
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | transexitcode: 0
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | exeerrorcode: 0
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | exeerrordiag: 
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | exitcode: 0
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | exitmsg: OK
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | cpuconsumptiontime: 317105 s
[2025-12-01 21:58:39] 2025-12-01 20:57:32,220 | INFO     | nevents: 1000
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | neventsw: 0
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | pid: 5347
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | pgrp: 5347
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | corecount: 8
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | event service: False
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | sizes: {0: 2284146, 1: 2284345, 12: 2284345, 23: 2284373, 33: 2284401, 44: 2284457, 55: 2284613, 66: 2284641, 76: 2284669, 87: 2284725, 97: 2285015, 98: 2285323, 8
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | --------------------------------------------------
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | 
[2025-12-01 21:58:39] 2025-12-01 20:57:32,221 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-12-01 21:58:39] 2025-12-01 20:57:32,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,245 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,245 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,245 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,246 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 21:58:39] 2025-12-01 20:57:32,248 | INFO     | job 6900988994 has completed (purged errors)
[2025-12-01 21:58:39] 2025-12-01 20:57:32,248 | INFO     | overall cleanup function is called
[2025-12-01 21:58:39] 2025-12-01 20:57:33,265 | INFO     | --- collectZombieJob: --- 10, [5347]
[2025-12-01 21:58:39] 2025-12-01 20:57:33,266 | INFO     | zombie collector waiting for pid 5347
[2025-12-01 21:58:39] 2025-12-01 20:57:33,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 21:58:39] 2025-12-01 20:57:33,266 | INFO     | collected zombie processes
[2025-12-01 21:58:39] 2025-12-01 20:57:33,266 | INFO     | will attempt to kill all subprocesses of pid=5347
[2025-12-01 21:58:39] 2025-12-01 20:57:33,372 | INFO     | process IDs to be killed: [5347] (in reverse order)
[2025-12-01 21:58:39] 2025-12-01 20:57:34,242 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 21:58:39] 2025-12-01 20:57:34,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 21:58:39] 2025-12-01 20:57:34,246 | INFO     | did not find any defunct processes belonging to 5347
[2025-12-01 21:58:39] 2025-12-01 20:57:34,248 | INFO     | did not find any defunct processes belonging to 5347
[2025-12-01 21:58:39] 2025-12-01 20:57:34,259 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 21:58:39] 2025-12-01 20:57:34,259 | INFO     | ready for new job
[2025-12-01 21:58:39] 2025-12-01 20:57:34,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 21:58:39] 2025-12-01 20:57:34,265 | INFO     | ***************************************
[2025-12-01 21:58:39] 2025-12-01 20:57:34,265 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 21:58:39] 2025-12-01 20:57:34,265 | INFO     | ***************************************
[2025-12-01 21:58:39] 2025-12-01 20:57:34,265 | INFO     | 
[2025-12-01 21:58:39] 2025-12-01 20:57:34,266 | INFO     | pilot is running in a VM
[2025-12-01 21:58:39] 2025-12-01 20:57:34,266 | INFO     | architecture information:
[2025-12-01 21:58:39] 2025-12-01 20:57:34,266 | INFO     | executing command: cat /etc/os-release
[2025-12-01 21:58:39] 2025-12-01 20:57:34,587 | INFO     | cat /etc/os-release:
[2025-12-01 21:58:39] NAME="CentOS Linux"
[2025-12-01 21:58:39] VERSION="7 (Core)"
[2025-12-01 21:58:39] ID="centos"
[2025-12-01 21:58:39] ID_LIKE="rhel fedora"
[2025-12-01 21:58:39] VERSION_ID="7"
[2025-12-01 21:58:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 21:58:39] ANSI_COLOR="0;31"
[2025-12-01 21:58:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 21:58:39] HOME_URL="https://www.centos.org/"
[2025-12-01 21:58:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 21:58:39] 
[2025-12-01 21:58:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 21:58:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 21:58:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 21:58:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 21:58:39] 
[2025-12-01 21:58:39] 2025-12-01 20:57:34,587 | INFO     | ***************************************
[2025-12-01 21:58:39] 2025-12-01 20:57:35,091 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-12-01 21:58:39] 2025-12-01 20:57:35,335 | INFO     | sufficient remaining disk space (489128198144 B)
[2025-12-01 21:58:39] 2025-12-01 20:57:35,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 21:58:39] 2025-12-01 20:57:35,336 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 21:58:39] 2025-12-01 20:57:35,336 | INFO     | update_server=False
[2025-12-01 21:58:39] 2025-12-01 20:57:35,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 21:58:39] 2025-12-01 20:57:35,382 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 21:58:39] 2025-12-01 20:57:35,383 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 21:58:39] 2025-12-01 20:57:35,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:58:39] 2025-12-01 20:57:35,383 | INFO     | will abort loop
[2025-12-01 21:58:39] 2025-12-01 20:57:35,642 | INFO     | all payload control threads have been joined
[2025-12-01 21:58:39] 2025-12-01 20:57:35,767 | INFO     | all data control threads have been joined
[2025-12-01 21:58:39] 2025-12-01 20:57:36,037 | INFO     | all job control threads have been joined
[2025-12-01 21:58:39] 2025-12-01 20:57:36,342 | INFO     | [job] retrieve thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,389 | INFO     | [job] job monitor thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,393 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 21:58:39] 2025-12-01 20:57:36,581 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,649 | INFO     | [payload] control thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,682 | INFO     | [data] copytool_in thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,774 | INFO     | [data] control thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:36,826 | INFO     | [payload] validate_post thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:37,043 | INFO     | [job] control thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:37,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:58:39] 2025-12-01 20:57:37,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 21:58:39] 2025-12-01 20:57:37,422 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:37,592 | INFO     | [job] validate thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:37,662 | INFO     | [payload] failed_post thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:37,795 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:38,243 | INFO     | [job] queue monitor thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:38,571 | INFO     | [data] copytool_out thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:57:41,396 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 21:58:39] 2025-12-01 20:58:04,246 | INFO     | PID=31184 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 21:58:39] 2025-12-01 20:58:04,247 | INFO     | .. there are 9 such processes running
[2025-12-01 21:58:39] 2025-12-01 20:58:04,247 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 21:58:39] 2025-12-01 20:58:04,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 21:58:39] 2025-12-01 20:58:04,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 21:58:39] 2025-12-01 20:58:32,082 | INFO     | [monitor] cgroup control has ended
[2025-12-01 21:58:39] 2025-12-01 20:58:33,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731213727552)>', '<ExcThread(monitor, started 139730779891456)>']
[2025-12-01 21:58:39] 2025-12-01 20:58:34,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 21:58:39] 2025-12-01 20:58:34,421 | INFO     | [monitor] control thread has ended
[2025-12-01 21:58:39] 2025-12-01 20:58:38,523 | INFO     | all workflow threads have been joined
[2025-12-01 21:58:39] 2025-12-01 20:58:38,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 21:58:39] 2025-12-01 20:58:38,524 | INFO     | traces error code: 0
[2025-12-01 21:58:39] 2025-12-01 20:58:38,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 21:58:39] 2025-12-01 20:58:38,681 [wrapper] ==== pilot stdout END ====
[2025-12-01 21:58:39] 2025-12-01 20:58:38,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 21:58:39] 2025-12-01 20:58:38,692 [wrapper] pilotpid: 31184
[2025-12-01 21:58:39] 2025-12-01 20:58:38,699 [wrapper] Pilot exit status: 0
[2025-12-01 21:58:39] 2025-12-01 20:58:38,738 [wrapper] pandaids: 6900988994
[2025-12-01 21:58:39] 2025-12-01 20:58:38,821 [wrapper] cleanup supervisor_pilot 32244 31185
[2025-12-01 21:58:39] 2025-12-01 20:58:38,861 [wrapper] Test setup, not cleaning
[2025-12-01 21:58:39] 2025-12-01 20:58:38,933 [wrapper] apfmon messages muted
[2025-12-01 21:58:39] 2025-12-01 20:58:38,939 [wrapper] ==== wrapper stdout END ====
[2025-12-01 21:58:39] 2025-12-01 20:58:38,942 [wrapper] ==== wrapper stderr END ====
[2025-12-01 21:58:39]  *** Error codes and diagnostics ***
[2025-12-01 21:58:39]     "exeErrorCode": 0,
[2025-12-01 21:58:39]     "exeErrorDiag": "",
[2025-12-01 21:58:39]     "pilotErrorCode": 0,
[2025-12-01 21:58:39]     "pilotErrorDiag": "",
[2025-12-01 21:58:39]  *** Listing of results directory ***
[2025-12-01 21:58:39] total 1329128
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-12-01 21:58:39] -rwx------. 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:04 queuedata.json
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc       100 Nov 30 22:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 21:58:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 22:11 run_atlas
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc       105 Nov 30 22:11 job.xml
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc      6393 Nov 30 22:11 init_data.xml
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc 411257340 Nov 30 22:11 EVNT.47483658._004522.pool.root.1
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc     15847 Nov 30 22:11 start_atlas.sh
[2025-12-01 21:58:39] drwxrwx--x. 2 boinc boinc        68 Nov 30 22:11 shared
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc    611290 Nov 30 22:11 input.tar.gz
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc         0 Nov 30 22:11 boinc_lockfile
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc      2787 Nov 30 22:12 pandaJob.out
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc    993245 Nov 30 22:15 agis_schedconf.cvmfs.json
[2025-12-01 21:58:39] drwx------. 7 boinc boinc      4096 Nov 30 22:16 pilot3
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc       533 Dec  1 21:28 boinc_task_state.xml
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc 918209625 Dec  1 21:55 HITS.47556185._002857.pool.root.1
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc      1035 Dec  1 21:55 memory_monitor_summary.json
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc   1516240 Dec  1 21:56 agis_ddmendpoints.agis.ALL.json
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc   2469045 Dec  1 21:56 log.47556185._002857.job.log.tgz.1
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc      8622 Dec  1 21:57 heartbeat.json
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc        95 Dec  1 21:58 pilot_heartbeat.json
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc        29 Dec  1 21:58 wrapper_checkpoint.txt
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc      8192 Dec  1 21:58 boinc_mmap_file
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc      5071 Dec  1 21:58 pilotlog.txt
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc  11335328 Dec  1 21:58 log.47556185._002857.job.log.1
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc       353 Dec  1 21:58 output.list
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc       620 Dec  1 21:58 runtime_log
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc  13824000 Dec  1 21:58 result.tar.gz
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc      8833 Dec  1 21:58 runtime_log.err
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc       662 Dec  1 21:58 avpMDmA21i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX4KKDmQgLQYm.diag
[2025-12-01 21:58:39] -rw-r--r--. 1 boinc boinc     21408 Dec  1 21:58 stderr.txt
[2025-12-01 21:58:39] HITS file was successfully produced:
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc 918209625 Dec  1 21:55 shared/HITS.pool.root.1
[2025-12-01 21:58:39]  *** Contents of shared directory: ***
[2025-12-01 21:58:39] total 1312428
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc 411257340 Nov 30 22:11 ATLAS.root_0
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc     15847 Nov 30 22:11 start_atlas.sh
[2025-12-01 21:58:39] -rw-r--r--. 2 boinc boinc    611290 Nov 30 22:11 input.tar.gz
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc 918209625 Dec  1 21:55 HITS.pool.root.1
[2025-12-01 21:58:39] -rw-------. 1 boinc boinc  13824000 Dec  1 21:58 result.tar.gz
21:58:40 (27357): run_atlas exited; CPU time 317734.560895
21:58:40 (27357): called boinc_finish(0)

</stderr_txt>
]]>

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