Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:47:04 (1827): wrapper (7.7.26015): starting
02:47:04 (1827): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 02:47:04] Arguments: --nthreads 8
[2025-11-29 02:47:04] Threads: 8
[2025-11-29 02:47:04] Checking for CVMFS
[2025-11-29 02:47:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:47:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:47:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:47:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:47:04] 2.11.0.0 7831 69357 83040 153425 0 1 2913661 4096000 0 130560 1 6560470 99.691 3881756 444 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-29 02:47:04] CVMFS is ok
[2025-11-29 02:47:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:47:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:47:04] Further information can be found at the LHC@home message board.
[2025-11-29 02:47:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:47:04] Checking for apptainer binary...
[2025-11-29 02:47:04] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-29 02:47:04] apptainer is not installed, using version from CVMFS
[2025-11-29 02:47:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:47:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_10933694/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node112
[2025-11-29 02:47:05] apptainer works
[2025-11-29 02:47:05] Set ATHENA_PROC_NUMBER=8
[2025-11-29 02:47:05] Set ATHENA_CORE_NUMBER=8
[2025-11-29 02:47:05] Starting ATLAS job with PandaID=6900988730
[2025-11-29 02:47:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10933694/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 07:14:00]  *** The last 200 lines of the pilot log: ***
[2025-11-29 07:14:00] 2025-11-29 06:13:24,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 07:14:00] 2025-11-29 06:13:24,644 | INFO     | time since job start (15974s) is within the limit (172800.0s)
[2025-11-29 07:14:00] 2025-11-29 06:13:26,075 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-29 07:14:00] 2025-11-29 06:13:26,122 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 07:14:00] 2025-11-29 06:13:26,122 | INFO     | job 6900988730 has state=finished
[2025-11-29 07:14:00] 2025-11-29 06:13:26,122 | INFO     | preparing for final server update for job 6900988730 in state='finished'
[2025-11-29 07:14:00] 2025-11-29 06:13:26,123 | INFO     | this job has now completed (state=finished)
[2025-11-29 07:14:00] 2025-11-29 06:13:26,123 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-29 07:14:00] 2025-11-29 06:13:26,123 | INFO     | log transfer has been attempted: DONE
[2025-11-29 07:14:00] 2025-11-29 06:13:26,123 | INFO     | job 6900988730 has finished - writing final server update
[2025-11-29 07:14:00] 2025-11-29 06:13:26,123 | INFO     | total number of processed events: 1000 (read)
[2025-11-29 07:14:00] 2025-11-29 06:13:26,124 | INFO     | executing command: lscpu
[2025-11-29 07:14:00] 2025-11-29 06:13:26,153 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-29 07:14:00] 2025-11-29 06:13:26,650 | INFO     | time since job start (15976s) is within the limit (172800.0s)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,091 | INFO     | monitor loop #1166: job 0:6900988730 is in state 'finished'
[2025-11-29 07:14:00] 2025-11-29 06:13:27,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,967 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 07:14:00] 2025-11-29 06:13:27,972 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3065.3115781250003
[2025-11-29 07:14:00] 2025-11-29 06:13:27,977 | INFO     | using path: /tmp/job_10933694/atlas/pilot/slots/0/PanDA_Pilot-6900988730/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,977 | INFO     | extracted standard info from prmon json
[2025-11-29 07:14:00] 2025-11-29 06:13:27,977 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 07:14:00] 2025-11-29 06:13:27,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 07:14:00] 2025-11-29 06:13:27,980 | INFO     | fitting pss+swap vs Time
[2025-11-29 07:14:00] 2025-11-29 06:13:27,980 | INFO     | sum of square deviations: 5576683165.5
[2025-11-29 07:14:00] 2025-11-29 06:13:27,981 | INFO     | sum of deviations: 1063782560569.9995
[2025-11-29 07:14:00] 2025-11-29 06:13:27,981 | INFO     | mean x: 1764388808.5
[2025-11-29 07:14:00] 2025-11-29 06:13:27,981 | INFO     | mean y: 3528691.2595419846
[2025-11-29 07:14:00] 2025-11-29 06:13:27,981 | INFO     | intersect: -336563206202.11456
[2025-11-29 07:14:00] 2025-11-29 06:13:27,982 | INFO     | chi2: 8.015716983383376
[2025-11-29 07:14:00] 2025-11-29 06:13:27,982 | INFO     | sum of square deviations: 5263458688.0
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | sum of deviations: 1070782065106.0004
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | mean x: 1764388656.0
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | mean y: 3531614.5408560312
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | intersect: -358938343055.9269
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | chi2: 6.70798898280938
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | current chi2=6.70798898280938 (change=16.314548072055477 %)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | right removable region: 256
[2025-11-29 07:14:00] 2025-11-29 06:13:27,983 | INFO     | sum of square deviations: 5263458688.0
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | sum of deviations: 989121887083.0
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | mean x: 1764388961.0
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | mean y: 3564861.5564202336
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | intersect: -331564676118.76184
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | chi2: 6.596171217431352
[2025-11-29 07:14:00] 2025-11-29 06:13:27,984 | INFO     | current chi2=6.596171217431352 (change=17.709529526737906 %)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,985 | INFO     | left removable region: 10
[2025-11-29 07:14:00] 2025-11-29 06:13:27,985 | INFO     | sum of square deviations: 4616114457.5
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | sum of deviations: 940578940869.5
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | mean x: 1764388930.5
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | mean y: 3577619.3699186994
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | intersect: -359508104079.7748
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | chi2: 5.066661129038564
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | current memory leak: 203.76 B/s (using 246 data points, chi2=5.07)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | could have reported an average CPU frequency of 3018 MHz (12 samples)
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | ..............................
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . Timing measurements:
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . get job = 0 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . initial setup = 1 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . payload setup = 2 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . stage-in = 0 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . payload execution = 15952 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . stage-out = 1 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | . log creation = 0 s
[2025-11-29 07:14:00] 2025-11-29 06:13:27,986 | INFO     | ..............................
[2025-11-29 07:14:00] 2025-11-29 06:13:28,035 | INFO     | 
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | job summary report
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | --------------------------------------------------
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | PanDA job id: 6900988730
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | task id: 47556185
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | errors: (none)
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | pilot state: finished 
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | transexitcode: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | exeerrorcode: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | exeerrordiag: 
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | exitcode: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | exitmsg: OK
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | cpuconsumptiontime: 121601 s
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | nevents: 1000
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | neventsw: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | pid: 28804
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | pgrp: 28804
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | corecount: 8
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | event service: False
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | sizes: {0: 2284442, 2: 2284704, 11: 2284732, 15958: 2317093, 15959: 2326117, 15963: 2326173, 15965: 2326547}
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | --------------------------------------------------
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | 
[2025-11-29 07:14:00] 2025-11-29 06:13:28,036 | INFO     | executing command: ls -lF /tmp/job_10933694/atlas/pilot/slots/0
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,045 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | job 6900988730 has completed (purged errors)
[2025-11-29 07:14:00] 2025-11-29 06:13:28,046 | INFO     | overall cleanup function is called
[2025-11-29 07:14:00] 2025-11-29 06:13:29,053 | INFO     | --- collectZombieJob: --- 10, [28804]
[2025-11-29 07:14:00] 2025-11-29 06:13:29,053 | INFO     | zombie collector waiting for pid 28804
[2025-11-29 07:14:00] 2025-11-29 06:13:29,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 07:14:00] 2025-11-29 06:13:29,054 | INFO     | collected zombie processes
[2025-11-29 07:14:00] 2025-11-29 06:13:29,054 | INFO     | will attempt to kill all subprocesses of pid=28804
[2025-11-29 07:14:00] 2025-11-29 06:13:29,172 | INFO     | process IDs to be killed: [28804] (in reverse order)
[2025-11-29 07:14:00] 2025-11-29 06:13:29,215 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 07:14:00] 2025-11-29 06:13:29,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 07:14:00] 2025-11-29 06:13:29,220 | INFO     | did not find any defunct processes belonging to 28804
[2025-11-29 07:14:00] 2025-11-29 06:13:29,223 | INFO     | did not find any defunct processes belonging to 28804
[2025-11-29 07:14:00] 2025-11-29 06:13:29,224 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 07:14:00] 2025-11-29 06:13:29,224 | INFO     | ready for new job
[2025-11-29 07:14:00] 2025-11-29 06:13:29,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 07:14:00] 2025-11-29 06:13:29,225 | INFO     | ***************************************
[2025-11-29 07:14:00] 2025-11-29 06:13:29,225 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 07:14:00] 2025-11-29 06:13:29,225 | INFO     | ***************************************
[2025-11-29 07:14:00] 2025-11-29 06:13:29,225 | INFO     | 
[2025-11-29 07:14:00] 2025-11-29 06:13:29,239 | INFO     | architecture information:
[2025-11-29 07:14:00] 2025-11-29 06:13:29,240 | INFO     | executing command: cat /etc/os-release
[2025-11-29 07:14:00] 2025-11-29 06:13:29,245 | INFO     | cat /etc/os-release:
[2025-11-29 07:14:00] NAME="CentOS Linux"
[2025-11-29 07:14:00] VERSION="7 (Core)"
[2025-11-29 07:14:00] ID="centos"
[2025-11-29 07:14:00] ID_LIKE="rhel fedora"
[2025-11-29 07:14:00] VERSION_ID="7"
[2025-11-29 07:14:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 07:14:00] ANSI_COLOR="0;31"
[2025-11-29 07:14:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 07:14:00] HOME_URL="https://www.centos.org/"
[2025-11-29 07:14:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 07:14:00] 
[2025-11-29 07:14:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 07:14:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 07:14:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 07:14:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 07:14:00] 
[2025-11-29 07:14:00] 2025-11-29 06:13:29,245 | INFO     | ***************************************
[2025-11-29 07:14:00] 2025-11-29 06:13:29,747 | INFO     | executing command: df -mP /tmp/job_10933694/atlas/pilot/slots/0
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | INFO     | sufficient remaining disk space (213795209216 B)
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | INFO     | update_server=False
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 07:14:00] 2025-11-29 06:13:29,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 07:14:00] 2025-11-29 06:13:29,854 | INFO     | all data control threads have been joined
[2025-11-29 07:14:00] 2025-11-29 06:13:30,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 07:14:00] 2025-11-29 06:13:30,599 | INFO     | aborting loop
[2025-11-29 07:14:00] 2025-11-29 06:13:30,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 07:14:00] 2025-11-29 06:13:30,747 | INFO     | all job control threads have been joined
[2025-11-29 07:14:00] 2025-11-29 06:13:30,756 | INFO     | [job] retrieve thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:30,759 | INFO     | [job] queue monitor thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:30,765 | INFO     | all payload control threads have been joined
[2025-11-29 07:14:00] 2025-11-29 06:13:30,812 | INFO     | [payload] failed_post thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:30,844 | INFO     | [data] copytool_in thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:30,859 | INFO     | [data] control thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,604 | INFO     | [job] job monitor thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,685 | INFO     | [job] validate thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,753 | INFO     | [job] control thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,770 | INFO     | [payload] control thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:31,874 | INFO     | [payload] validate_post thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:32,046 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:32,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 07:14:00] 2025-11-29 06:13:32,610 | INFO     | [data] copytool_out thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:36,132 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:36,618 | INFO     | [monitor] cgroup control has ended
[2025-11-29 07:14:00] 2025-11-29 06:13:39,928 | INFO     | job.realtimelogging is not enabled
[2025-11-29 07:14:00] 2025-11-29 06:13:40,933 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 07:14:00] 2025-11-29 06:13:42,815 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-11-29 07:14:00] 2025-11-29 06:13:47,840 | INFO     | all workflow threads have been joined
[2025-11-29 07:14:00] 2025-11-29 06:13:47,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 07:14:00] 2025-11-29 06:13:47,841 | INFO     | traces error code: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:47,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 07:14:00] 2025-11-29 06:13:59,856 | INFO     | PID=6630 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 07:14:00] 2025-11-29 06:13:59,856 | INFO     | .. there are 8 such processes running
[2025-11-29 07:14:00] 2025-11-29 06:13:59,857 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 07:14:00] 2025-11-29 06:13:59,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 07:14:00] 2025-11-29 06:13:59,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 07:14:00] 2025-11-29 06:13:59,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 07:14:00] 2025-11-29 06:13:59,857 | INFO     | [monitor] control thread has ended
[2025-11-29 07:14:00] 2025-11-29 06:13:59,910 [wrapper] ==== pilot stdout END ====
[2025-11-29 07:14:00] 2025-11-29 06:13:59,911 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 07:14:00] 2025-11-29 06:13:59,912 [wrapper] pilotpid: 6630
[2025-11-29 07:14:00] 2025-11-29 06:13:59,914 [wrapper] Pilot exit status: 0
[2025-11-29 07:14:00] 2025-11-29 06:13:59,918 [wrapper] pandaids: 6900988730
[2025-11-29 07:14:00] 2025-11-29 06:13:59,944 [wrapper] cleanup supervisor_pilot 12110 6631
[2025-11-29 07:14:00] 2025-11-29 06:13:59,945 [wrapper] Test setup, not cleaning
[2025-11-29 07:14:00] 2025-11-29 06:13:59,946 [wrapper] apfmon messages muted
[2025-11-29 07:14:00] 2025-11-29 06:13:59,947 [wrapper] ==== wrapper stdout END ====
[2025-11-29 07:14:00] 2025-11-29 06:13:59,948 [wrapper] ==== wrapper stderr END ====
[2025-11-29 07:14:00]  *** Error codes and diagnostics ***
[2025-11-29 07:14:00]     "exeErrorCode": 0,
[2025-11-29 07:14:00]     "exeErrorDiag": "",
[2025-11-29 07:14:00]     "pilotErrorCode": 0,
[2025-11-29 07:14:00]     "pilotErrorDiag": "",
[2025-11-29 07:14:00]  *** Listing of results directory ***
[2025-11-29 07:14:00] total 1293604
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user    576529 Nov 28 01:58 pilot3.tar.gz
[2025-11-29 07:14:00] -rwx------ 1 mf493845 unix-user     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      5112 Nov 28 02:04 queuedata.json
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       100 Nov 29 01:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 07:14:00] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 29 01:03 run_atlas
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       105 Nov 29 01:03 job.xml
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 02:47 start_atlas.sh
[2025-11-29 07:14:00] drwxrwx--x 2 mf493845 unix-user       100 Nov 29 02:47 shared
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user    590107 Nov 29 02:47 input.tar.gz
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      6392 Nov 29 02:47 init_data.xml
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user 408628941 Nov 29 02:47 EVNT.47483658._004516.pool.root.1
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user         0 Nov 29 02:47 boinc_setup_complete
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      8192 Nov 29 02:47 boinc_mmap_file
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user         0 Nov 29 02:47 boinc_lockfile
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      2787 Nov 29 02:47 pandaJob.out
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user    991834 Nov 29 02:47 agis_schedconf.cvmfs.json
[2025-11-29 07:14:00] drwx------ 5 mf493845 unix-user       440 Nov 29 02:47 pilot3
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user 904399629 Nov 29 07:12 HITS.47556185._002797.pool.root.1
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      1024 Nov 29 07:13 memory_monitor_summary.json
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user   1516240 Nov 29 07:13 agis_ddmendpoints.agis.ALL.json
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user   1560099 Nov 29 07:13 log.47556185._002797.job.log.tgz.1
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      8586 Nov 29 07:13 heartbeat.json
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       819 Nov 29 07:13 pilotlog.txt
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user        95 Nov 29 07:13 pilot_heartbeat.json
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user   2307162 Nov 29 07:13 log.47556185._002797.job.log.1
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       353 Nov 29 07:13 output.list
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       620 Nov 29 07:13 runtime_log
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user   3891200 Nov 29 07:13 result.tar.gz
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user      9221 Nov 29 07:13 runtime_log.err
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user       651 Nov 29 07:13 hxkLDmA21i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmq3KKDmE9nOUo.diag
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user     22198 Nov 29 07:14 stderr.txt
[2025-11-29 07:14:00] HITS file was successfully produced:
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user 904399629 Nov 29 07:12 shared/HITS.pool.root.1
[2025-11-29 07:14:00]  *** Contents of shared directory: ***
[2025-11-29 07:14:00] total 1286652
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 02:47 start_atlas.sh
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user    590107 Nov 29 02:47 input.tar.gz
[2025-11-29 07:14:00] -rw-r--r-- 2 mf493845 unix-user 408628941 Nov 29 02:47 ATLAS.root_0
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user 904399629 Nov 29 07:12 HITS.pool.root.1
[2025-11-29 07:14:00] -rw------- 1 mf493845 unix-user   3891200 Nov 29 07:13 result.tar.gz
07:14:01 (1827): run_atlas exited; CPU time 121818.900391
07:14:01 (1827): called boinc_finish(0)

</stderr_txt>
]]>

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