Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:54:01 (17244): wrapper (7.7.26015): starting
02:54:01 (17244): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 02:54:01] Arguments: --nthreads 8
[2025-11-29 02:54:01] Threads: 8
[2025-11-29 02:54:01] Checking for CVMFS
[2025-11-29 02:54:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:54:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:54:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:54:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:54:03] 2.11.0.0 4111 69201 88244 153425 0 88 3949774 4096000 1210 130560 1 2408933 99.077 5666329 591 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-29 02:54:03] CVMFS is ok
[2025-11-29 02:54:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:54:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:54:03] Further information can be found at the LHC@home message board.
[2025-11-29 02:54:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:54:03] Checking for apptainer binary...
[2025-11-29 02:54:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-29 02:54:03] apptainer is not installed, using version from CVMFS
[2025-11-29 02:54:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:54:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_10933751/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node330
[2025-11-29 02:54:03] apptainer works
[2025-11-29 02:54:03] Set ATHENA_PROC_NUMBER=8
[2025-11-29 02:54:03] Set ATHENA_CORE_NUMBER=8
[2025-11-29 02:54:03] Starting ATLAS job with PandaID=6900955306
[2025-11-29 02:54:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10933751/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 07:16:40]  *** The last 200 lines of the pilot log: ***
[2025-11-29 07:16:40] 2025-11-29 06:16:04,056 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 07:16:40] 2025-11-29 06:16:04,074 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2801.4527656249998
[2025-11-29 07:16:40] 2025-11-29 06:16:04,079 | INFO     | using path: /tmp/job_10933751/atlas/pilot/slots/0/PanDA_Pilot-6900955306/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,079 | INFO     | extracted standard info from prmon json
[2025-11-29 07:16:40] 2025-11-29 06:16:04,079 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 07:16:40] 2025-11-29 06:16:04,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 07:16:40] 2025-11-29 06:16:04,082 | INFO     | fitting pss+swap vs Time
[2025-11-29 07:16:40] 2025-11-29 06:16:04,082 | INFO     | sum of square deviations: 5325139844.5
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | sum of deviations: 123422589387.49979
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | mean x: 1764389104.5
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | mean y: 2905157.926356589
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | intersect: -40890945205.34592
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | chi2: 3.183218139382502
[2025-11-29 07:16:40] 2025-11-29 06:16:04,083 | INFO     | sum of square deviations: 5021496942.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | sum of deviations: 174505042461.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | mean x: 1764388952.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | mean y: 2930601.0513833994
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | intersect: -61312404754.67396
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | chi2: 1.46594791647191
[2025-11-29 07:16:40] 2025-11-29 06:16:04,084 | INFO     | current chi2=1.46594791647191 (change=53.947613632401506 %)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,085 | INFO     | sum of square deviations: 4729621702.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,085 | INFO     | sum of deviations: 168470806835.5
[2025-11-29 07:16:40] 2025-11-29 06:16:04,085 | INFO     | mean x: 1764388799.5
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | mean y: 2927447.875
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | intersect: -62845228990.84988
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | chi2: 1.4623540266674502
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | current chi2=1.4623540266674502 (change=0.2451580826356537 %)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | right removable region: 247
[2025-11-29 07:16:40] 2025-11-29 06:16:04,086 | INFO     | sum of square deviations: 5021496942.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | sum of deviations: 74351239214.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | mean x: 1764389257.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | mean y: 2929615.5256916997
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | intersect: -26121656186.08779
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | chi2: 1.80383360892061
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | current chi2=1.80383360892061 (change=43.33301929252868 %)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,087 | INFO     | sum of square deviations: 4729621702.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,088 | INFO     | sum of deviations: 61764128639.00001
[2025-11-29 07:16:40] 2025-11-29 06:16:04,088 | INFO     | mean x: 1764389409.5
[2025-11-29 07:16:40] 2025-11-29 06:16:04,088 | INFO     | mean y: 2936186.959677419
[2025-11-29 07:16:40] 2025-11-29 06:16:04,088 | INFO     | intersect: -23038224676.194546
[2025-11-29 07:16:40] 2025-11-29 06:16:04,089 | INFO     | chi2: 1.7827262731867788
[2025-11-29 07:16:40] 2025-11-29 06:16:04,089 | INFO     | current chi2=1.7827262731867788 (change=1.1701376240828285 %)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,089 | INFO     | left removable region: 20
[2025-11-29 07:16:40] 2025-11-29 06:16:04,089 | INFO     | sum of square deviations: 3627000098.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | sum of deviations: 86721270736.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | mean x: 1764389379.0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | mean y: 2972285.2246696036
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | intersect: -42183431046.92708
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | chi2: 0.032304325253520456
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | current memory leak: 23.91 B/s (using 227 data points, chi2=0.03)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | could have reported an average CPU frequency of 2890 MHz (12 samples)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | ..............................
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . Timing measurements:
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . get job = 0 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . initial setup = 1 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . payload setup = 2 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . stage-in = 0 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . payload execution = 15693 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . stage-out = 1 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | . log creation = 0 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,090 | INFO     | ..............................
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | job summary report
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | --------------------------------------------------
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | PanDA job id: 6900955306
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | task id: 47556185
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | errors: (none)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | pilot state: finished 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | transexitcode: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | exeerrorcode: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | exeerrordiag: 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | exitcode: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | exitmsg: OK
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | cpuconsumptiontime: 120370 s
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | nevents: 1000
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | neventsw: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | pid: 12171
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | pgrp: 12171
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | corecount: 8
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | event service: False
[2025-11-29 07:16:40] 2025-11-29 06:16:04,139 | INFO     | sizes: {0: 2284442, 2: 2284704, 11: 2284732, 15699: 2317009, 15700: 2326033, 15701: 2326089, 15703: 2326463}
[2025-11-29 07:16:40] 2025-11-29 06:16:04,140 | INFO     | --------------------------------------------------
[2025-11-29 07:16:40] 2025-11-29 06:16:04,140 | INFO     | 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,140 | INFO     | executing command: ls -lF /tmp/job_10933751/atlas/pilot/slots/0
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,149 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | job 6900955306 has completed (purged errors)
[2025-11-29 07:16:40] 2025-11-29 06:16:04,150 | INFO     | overall cleanup function is called
[2025-11-29 07:16:40] 2025-11-29 06:16:04,692 | INFO     | PID=29904 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 07:16:40] 2025-11-29 06:16:04,692 | INFO     | .. there are 5 such processes running
[2025-11-29 07:16:40] 2025-11-29 06:16:05,157 | INFO     | --- collectZombieJob: --- 10, [12171]
[2025-11-29 07:16:40] 2025-11-29 06:16:05,157 | INFO     | zombie collector waiting for pid 12171
[2025-11-29 07:16:40] 2025-11-29 06:16:05,157 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 07:16:40] 2025-11-29 06:16:05,157 | INFO     | collected zombie processes
[2025-11-29 07:16:40] 2025-11-29 06:16:05,157 | INFO     | will attempt to kill all subprocesses of pid=12171
[2025-11-29 07:16:40] 2025-11-29 06:16:05,262 | INFO     | process IDs to be killed: [12171] (in reverse order)
[2025-11-29 07:16:40] 2025-11-29 06:16:05,300 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 07:16:40] 2025-11-29 06:16:05,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 07:16:40] 2025-11-29 06:16:05,304 | INFO     | did not find any defunct processes belonging to 12171
[2025-11-29 07:16:40] 2025-11-29 06:16:05,307 | INFO     | did not find any defunct processes belonging to 12171
[2025-11-29 07:16:40] 2025-11-29 06:16:05,308 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 07:16:40] 2025-11-29 06:16:05,308 | INFO     | ready for new job
[2025-11-29 07:16:40] 2025-11-29 06:16:05,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 07:16:40] 2025-11-29 06:16:05,309 | INFO     | ***************************************
[2025-11-29 07:16:40] 2025-11-29 06:16:05,309 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 07:16:40] 2025-11-29 06:16:05,309 | INFO     | ***************************************
[2025-11-29 07:16:40] 2025-11-29 06:16:05,309 | INFO     | 
[2025-11-29 07:16:40] 2025-11-29 06:16:05,323 | INFO     | architecture information:
[2025-11-29 07:16:40] 2025-11-29 06:16:05,323 | INFO     | executing command: cat /etc/os-release
[2025-11-29 07:16:40] 2025-11-29 06:16:05,330 | INFO     | cat /etc/os-release:
[2025-11-29 07:16:40] NAME="CentOS Linux"
[2025-11-29 07:16:40] VERSION="7 (Core)"
[2025-11-29 07:16:40] ID="centos"
[2025-11-29 07:16:40] ID_LIKE="rhel fedora"
[2025-11-29 07:16:40] VERSION_ID="7"
[2025-11-29 07:16:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 07:16:40] ANSI_COLOR="0;31"
[2025-11-29 07:16:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 07:16:40] HOME_URL="https://www.centos.org/"
[2025-11-29 07:16:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 07:16:40] 
[2025-11-29 07:16:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 07:16:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 07:16:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 07:16:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 07:16:40] 
[2025-11-29 07:16:40] 2025-11-29 06:16:05,330 | INFO     | ***************************************
[2025-11-29 07:16:40] 2025-11-29 06:16:05,833 | INFO     | executing command: df -mP /tmp/job_10933751/atlas/pilot/slots/0
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | INFO     | sufficient remaining disk space (217528139776 B)
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | INFO     | update_server=False
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 07:16:40] 2025-11-29 06:16:05,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 07:16:40] 2025-11-29 06:16:05,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 07:16:40] 2025-11-29 06:16:05,946 | INFO     | aborting loop
[2025-11-29 07:16:40] 2025-11-29 06:16:06,710 | INFO     | all payload control threads have been joined
[2025-11-29 07:16:40] 2025-11-29 06:16:06,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 07:16:40] 2025-11-29 06:16:06,825 | INFO     | all data control threads have been joined
[2025-11-29 07:16:40] 2025-11-29 06:16:06,844 | INFO     | [job] retrieve thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:06,844 | INFO     | [job] queue monitor thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:06,951 | INFO     | [job] job monitor thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:06,952 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:06,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,112 | INFO     | all job control threads have been joined
[2025-11-29 07:16:40] 2025-11-29 06:16:07,156 | INFO     | [payload] failed_post thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,334 | INFO     | [data] copytool_in thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,406 | INFO     | [payload] validate_post thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,715 | INFO     | [payload] control thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,775 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,827 | INFO     | [job] validate thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:07,831 | INFO     | [data] control thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:08,117 | INFO     | [job] control thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:08,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 07:16:40] 2025-11-29 06:16:08,755 | INFO     | [data] copytool_out thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:12,451 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:16,616 | INFO     | job.realtimelogging is not enabled
[2025-11-29 07:16:40] 2025-11-29 06:16:17,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 07:16:40] 2025-11-29 06:16:33,824 | INFO     | [monitor] cgroup control has ended
[2025-11-29 07:16:40] 2025-11-29 06:16:35,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-29 07:16:40] 2025-11-29 06:16:36,885 | INFO     | PID=29904 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 07:16:40] 2025-11-29 06:16:36,885 | INFO     | .. there are 5 such processes running
[2025-11-29 07:16:40] 2025-11-29 06:16:36,886 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 07:16:40] 2025-11-29 06:16:36,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 07:16:40] 2025-11-29 06:16:36,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 07:16:40] 2025-11-29 06:16:36,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 07:16:40] 2025-11-29 06:16:36,886 | INFO     | [monitor] control thread has ended
[2025-11-29 07:16:40] 2025-11-29 06:16:40,115 | INFO     | all workflow threads have been joined
[2025-11-29 07:16:40] 2025-11-29 06:16:40,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 07:16:40] 2025-11-29 06:16:40,115 | INFO     | traces error code: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:40,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 07:16:40] 2025-11-29 06:16:40,170 [wrapper] ==== pilot stdout END ====
[2025-11-29 07:16:40] 2025-11-29 06:16:40,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 07:16:40] 2025-11-29 06:16:40,173 [wrapper] pilotpid: 29904
[2025-11-29 07:16:40] 2025-11-29 06:16:40,174 [wrapper] Pilot exit status: 0
[2025-11-29 07:16:40] 2025-11-29 06:16:40,178 [wrapper] pandaids: 6900955306
[2025-11-29 07:16:40] 2025-11-29 06:16:40,201 [wrapper] cleanup supervisor_pilot 24458 29905
[2025-11-29 07:16:40] 2025-11-29 06:16:40,202 [wrapper] Test setup, not cleaning
[2025-11-29 07:16:40] 2025-11-29 06:16:40,204 [wrapper] apfmon messages muted
[2025-11-29 07:16:40] 2025-11-29 06:16:40,205 [wrapper] ==== wrapper stdout END ====
[2025-11-29 07:16:40] 2025-11-29 06:16:40,206 [wrapper] ==== wrapper stderr END ====
[2025-11-29 07:16:40]  *** Error codes and diagnostics ***
[2025-11-29 07:16:40]     "exeErrorCode": 0,
[2025-11-29 07:16:40]     "exeErrorDiag": "",
[2025-11-29 07:16:40]     "pilotErrorCode": 0,
[2025-11-29 07:16:40]     "pilotErrorDiag": "",
[2025-11-29 07:16:40]  *** Listing of results directory ***
[2025-11-29 07:16:40] total 1319956
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user    576529 Nov 28 01:58 pilot3.tar.gz
[2025-11-29 07:16:40] -rwx------ 1 mf493845 unix-user     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      5112 Nov 28 02:01 queuedata.json
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user       100 Nov 29 01:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 07:16:40] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 29 01:09 run_atlas
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user       105 Nov 29 01:09 job.xml
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user 410496787 Nov 29 02:54 EVNT.47483658._004492.pool.root.1
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 02:54 start_atlas.sh
[2025-11-29 07:16:40] drwxrwx--x 2 mf493845 unix-user       100 Nov 29 02:54 shared
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user    590107 Nov 29 02:54 input.tar.gz
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      6391 Nov 29 02:54 init_data.xml
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user         0 Nov 29 02:54 boinc_setup_complete
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      8192 Nov 29 02:54 boinc_mmap_file
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user         0 Nov 29 02:54 boinc_lockfile
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      2787 Nov 29 02:54 pandaJob.out
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user    991834 Nov 29 02:54 agis_schedconf.cvmfs.json
[2025-11-29 07:16:40] drwx------ 5 mf493845 unix-user       440 Nov 29 02:54 pilot3
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user 929633927 Nov 29 07:15 HITS.47556185._002554.pool.root.1
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      1026 Nov 29 07:15 memory_monitor_summary.json
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user   1516240 Nov 29 07:16 agis_ddmendpoints.agis.ALL.json
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user   1553972 Nov 29 07:16 log.47556185._002554.job.log.tgz.1
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      8587 Nov 29 07:16 heartbeat.json
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user        95 Nov 29 07:16 pilot_heartbeat.json
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      4907 Nov 29 07:16 pilotlog.txt
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user   2252725 Nov 29 07:16 log.47556185._002554.job.log.1
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user       353 Nov 29 07:16 output.list
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user       620 Nov 29 07:16 runtime_log
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user   3829760 Nov 29 07:16 result.tar.gz
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user      9221 Nov 29 07:16 runtime_log.err
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user       650 Nov 29 07:16 pYdNDmz11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmh2KKDmhQyT1n.diag
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user     21728 Nov 29 07:16 stderr.txt
[2025-11-29 07:16:40] HITS file was successfully produced:
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user 929633927 Nov 29 07:15 shared/HITS.pool.root.1
[2025-11-29 07:16:40]  *** Contents of shared directory: ***
[2025-11-29 07:16:40] total 1313060
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user 410496787 Nov 29 02:54 ATLAS.root_0
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 02:54 start_atlas.sh
[2025-11-29 07:16:40] -rw-r--r-- 2 mf493845 unix-user    590107 Nov 29 02:54 input.tar.gz
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user 929633927 Nov 29 07:15 HITS.pool.root.1
[2025-11-29 07:16:40] -rw------- 1 mf493845 unix-user   3829760 Nov 29 07:16 result.tar.gz
07:16:41 (17244): run_atlas exited; CPU time 120564.547061
07:16:41 (17244): called boinc_finish(0)

</stderr_txt>
]]>

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