Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:36 (32446): wrapper (7.7.26015): starting
21:33:36 (32446): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 21:33:36] Arguments: --nthreads 8
[2025-11-30 21:33:36] Threads: 8
[2025-11-30 21:33:36] Checking for CVMFS
[2025-11-30 21:33:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 21:33:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 21:33:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 21:33:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 21:33:38] 2.11.2.0 21112 178421 138508 153493 0 84 15424099 25165825 2554 130560 9 56236493 99.882 30046598 2130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 21:33:38] CVMFS is ok
[2025-11-30 21:33:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 21:33:38] Checking for apptainer binary...
[2025-11-30 21:33:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 21:33:38] Running /usr/bin/apptainer --version
[2025-11-30 21:33:39] apptainer version 1.3.2-1.el7
[2025-11-30 21:33:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 21:33:52] cg-vwn263.simple-grid.lan
[2025-11-30 21:33:52] apptainer works
[2025-11-30 21:33:52] Set ATHENA_PROC_NUMBER=8
[2025-11-30 21:33:52] Set ATHENA_CORE_NUMBER=8
[2025-11-30 21:33:52] Starting ATLAS job with PandaID=6900797843
[2025-11-30 21:33:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 21:00:46]  *** The last 200 lines of the pilot log: ***
[2025-12-01 21:00:46] 2025-12-01 19:59:57,355 | INFO     | PID=3855 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 21:00:46] 2025-12-01 19:59:57,355 | INFO     | .. there are 9 such processes running
[2025-12-01 21:00:46] 2025-12-01 19:59:58,356 | INFO     | time since job start (84122s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 19:59:59,312 | INFO     | monitor loop #5610: job 0:6900797843 is in state 'finished'
[2025-12-01 21:00:46] 2025-12-01 19:59:59,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:00:46] 2025-12-01 20:00:00,361 | INFO     | time since job start (84124s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 20:00:01,820 | INFO     | monitor loop #5611: job 0:6900797843 is in state 'finished'
[2025-12-01 21:00:46] 2025-12-01 20:00:01,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:00:46] 2025-12-01 20:00:02,368 | INFO     | time since job start (84126s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 20:00:04,327 | INFO     | monitor loop #5612: job 0:6900797843 is in state 'finished'
[2025-12-01 21:00:46] 2025-12-01 20:00:04,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:00:46] 2025-12-01 20:00:04,382 | INFO     | time since job start (84128s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 20:00:06,389 | INFO     | time since job start (84130s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 20:00:06,836 | INFO     | monitor loop #5613: job 0:6900797843 is in state 'finished'
[2025-12-01 21:00:46] 2025-12-01 20:00:06,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:00:46] 2025-12-01 20:00:07,757 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 21:00:46] 2025-12-01 20:00:07,758 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 21:00:46] 2025-12-01 20:00:07,759 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6900797843/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 21:00:46] 2025-12-01 20:00:07,760 | INFO     | extracted standard info from prmon json
[2025-12-01 21:00:46] 2025-12-01 20:00:07,760 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 21:00:46] 2025-12-01 20:00:07,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 21:00:46] 2025-12-01 20:00:07,784 | INFO     | fitting pss+swap vs Time
[2025-12-01 21:00:46] 2025-12-01 20:00:07,786 | INFO     | sum of square deviations: 797332348418.7406
[2025-12-01 21:00:46] 2025-12-01 20:00:07,861 | INFO     | sum of deviations: 2686054549493.9985
[2025-12-01 21:00:46] 2025-12-01 20:00:07,862 | INFO     | mean x: 1764577347.6138687
[2025-12-01 21:00:46] 2025-12-01 20:00:07,862 | INFO     | mean y: 2840763.073722628
[2025-12-01 21:00:46] 2025-12-01 20:00:07,862 | INFO     | intersect: -5941670358.15709
[2025-12-01 21:00:46] 2025-12-01 20:00:07,864 | INFO     | chi2: 20.323692519570475
[2025-12-01 21:00:46] 2025-12-01 20:00:07,866 | INFO     | sum of square deviations: 788634706570.0098
[2025-12-01 21:00:46] 2025-12-01 20:00:07,938 | INFO     | sum of deviations: 3134480590946.3423
[2025-12-01 21:00:46] 2025-12-01 20:00:07,938 | INFO     | mean x: 1764577195.1179488
[2025-12-01 21:00:46] 2025-12-01 20:00:07,938 | INFO     | mean y: 2848624.4512820514
[2025-12-01 21:00:46] 2025-12-01 20:00:07,938 | INFO     | intersect: -7010579675.426284
[2025-12-01 21:00:46] 2025-12-01 20:00:07,940 | INFO     | chi2: 17.151613750605364
[2025-12-01 21:00:46] 2025-12-01 20:00:07,940 | INFO     | current chi2=17.151613750605364 (change=15.607787639527576 %)
[2025-12-01 21:00:46] 2025-12-01 20:00:07,940 | INFO     | right removable region: 1364
[2025-12-01 21:00:46] 2025-12-01 20:00:07,942 | INFO     | sum of square deviations: 788633775710.0099
[2025-12-01 21:00:46] 2025-12-01 20:00:08,008 | INFO     | sum of deviations: 2127339512090.5654
[2025-12-01 21:00:46] 2025-12-01 20:00:08,008 | INFO     | mean x: 1764577500.1179488
[2025-12-01 21:00:46] 2025-12-01 20:00:08,009 | INFO     | mean y: 2850557.2014652016
[2025-12-01 21:00:46] 2025-12-01 20:00:08,009 | INFO     | intersect: -4757097030.342952
[2025-12-01 21:00:46] 2025-12-01 20:00:08,010 | INFO     | chi2: 15.928168173034702
[2025-12-01 21:00:46] 2025-12-01 20:00:08,011 | INFO     | current chi2=15.928168173034702 (change=21.62758732106949 %)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,011 | INFO     | left removable region: 10
[2025-12-01 21:00:46] 2025-12-01 20:00:08,013 | INFO     | sum of square deviations: 769721188594.6515
[2025-12-01 21:00:46] 2025-12-01 20:00:08,073 | INFO     | sum of deviations: 2253482274519.642
[2025-12-01 21:00:46] 2025-12-01 20:00:08,073 | INFO     | mean x: 1764577469.627031
[2025-12-01 21:00:46] 2025-12-01 20:00:08,073 | INFO     | mean y: 2868238.5398818315
[2025-12-01 21:00:46] 2025-12-01 20:00:08,073 | INFO     | intersect: -5163215414.531154
[2025-12-01 21:00:46] 2025-12-01 20:00:08,075 | INFO     | chi2: 9.152788007285867
[2025-12-01 21:00:46] 2025-12-01 20:00:08,075 | INFO     | current memory leak: 2.93 B/s (using 1354 data points, chi2=9.15)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,076 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | ..............................
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . Timing measurements:
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . get job = 0 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . initial setup = 14 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . payload setup = 158 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . stage-in = 0 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . payload execution = 83677 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . stage-out = 4 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | . log creation = 1 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,077 | INFO     | ..............................
[2025-12-01 21:00:46] 2025-12-01 20:00:08,202 | INFO     | 
[2025-12-01 21:00:46] 2025-12-01 20:00:08,202 | INFO     | job summary report
[2025-12-01 21:00:46] 2025-12-01 20:00:08,202 | INFO     | --------------------------------------------------
[2025-12-01 21:00:46] 2025-12-01 20:00:08,202 | INFO     | PanDA job id: 6900797843
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | task id: 47556173
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | errors: (none)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | pilot state: finished 
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | transexitcode: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | exeerrorcode: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | exeerrordiag: 
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | exitcode: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:08,203 | INFO     | exitmsg: OK
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | cpuconsumptiontime: 314799 s
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | nevents: 1000
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | neventsw: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | pid: 10547
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | pgrp: 10547
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | corecount: 8
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | event service: False
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | sizes: {0: 2284091, 1: 2284175, 2: 2284374, 13: 2284374, 24: 2284430, 34: 2284458, 45: 2284614, 56: 2284642, 67: 2284670, 77: 2284698, 88: 2284754, 94: 2285324, 99
[2025-12-01 21:00:46] 2025-12-01 20:00:08,204 | INFO     | --------------------------------------------------
[2025-12-01 21:00:46] 2025-12-01 20:00:08,205 | INFO     | 
[2025-12-01 21:00:46] 2025-12-01 20:00:08,205 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-01 21:00:46] 2025-12-01 20:00:08,397 | INFO     | time since job start (84132s) is within the limit (172800.0s)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,525 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,526 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | job 6900797843 has completed (purged errors)
[2025-12-01 21:00:46] 2025-12-01 20:00:08,527 | INFO     | overall cleanup function is called
[2025-12-01 21:00:46] 2025-12-01 20:00:09,543 | INFO     | --- collectZombieJob: --- 10, [10547]
[2025-12-01 21:00:46] 2025-12-01 20:00:09,543 | INFO     | zombie collector waiting for pid 10547
[2025-12-01 21:00:46] 2025-12-01 20:00:09,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 21:00:46] 2025-12-01 20:00:09,544 | INFO     | collected zombie processes
[2025-12-01 21:00:46] 2025-12-01 20:00:09,544 | INFO     | will attempt to kill all subprocesses of pid=10547
[2025-12-01 21:00:46] 2025-12-01 20:00:09,635 | INFO     | process IDs to be killed: [10547] (in reverse order)
[2025-12-01 21:00:46] 2025-12-01 20:00:09,697 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 21:00:46] 2025-12-01 20:00:09,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 21:00:46] 2025-12-01 20:00:09,704 | INFO     | did not find any defunct processes belonging to 10547
[2025-12-01 21:00:46] 2025-12-01 20:00:09,707 | INFO     | did not find any defunct processes belonging to 10547
[2025-12-01 21:00:46] 2025-12-01 20:00:09,760 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 21:00:46] 2025-12-01 20:00:09,761 | INFO     | ready for new job
[2025-12-01 21:00:46] 2025-12-01 20:00:09,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 21:00:46] 2025-12-01 20:00:09,766 | INFO     | ***************************************
[2025-12-01 21:00:46] 2025-12-01 20:00:09,766 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 21:00:46] 2025-12-01 20:00:09,766 | INFO     | ***************************************
[2025-12-01 21:00:46] 2025-12-01 20:00:09,766 | INFO     | 
[2025-12-01 21:00:46] 2025-12-01 20:00:09,767 | INFO     | pilot is running in a VM
[2025-12-01 21:00:46] 2025-12-01 20:00:09,767 | INFO     | architecture information:
[2025-12-01 21:00:46] 2025-12-01 20:00:09,772 | INFO     | executing command: cat /etc/os-release
[2025-12-01 21:00:46] 2025-12-01 20:00:09,977 | INFO     | cat /etc/os-release:
[2025-12-01 21:00:46] NAME="CentOS Linux"
[2025-12-01 21:00:46] VERSION="7 (Core)"
[2025-12-01 21:00:46] ID="centos"
[2025-12-01 21:00:46] ID_LIKE="rhel fedora"
[2025-12-01 21:00:46] VERSION_ID="7"
[2025-12-01 21:00:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 21:00:46] ANSI_COLOR="0;31"
[2025-12-01 21:00:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 21:00:46] HOME_URL="https://www.centos.org/"
[2025-12-01 21:00:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 21:00:46] 
[2025-12-01 21:00:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 21:00:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 21:00:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 21:00:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 21:00:46] 
[2025-12-01 21:00:46] 2025-12-01 20:00:09,977 | INFO     | ***************************************
[2025-12-01 21:00:46] 2025-12-01 20:00:10,480 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-01 21:00:46] 2025-12-01 20:00:10,622 | INFO     | sufficient remaining disk space (488115273728 B)
[2025-12-01 21:00:46] 2025-12-01 20:00:10,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 21:00:46] 2025-12-01 20:00:10,622 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 21:00:46] 2025-12-01 20:00:10,623 | INFO     | update_server=False
[2025-12-01 21:00:46] 2025-12-01 20:00:10,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 21:00:46] 2025-12-01 20:00:10,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 21:00:46] 2025-12-01 20:00:10,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:00:46] 2025-12-01 20:00:10,629 | INFO     | aborting loop
[2025-12-01 21:00:46] 2025-12-01 20:00:11,512 | INFO     | all data control threads have been joined
[2025-12-01 21:00:46] 2025-12-01 20:00:11,630 | INFO     | [job] retrieve thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:11,634 | INFO     | [job] job monitor thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:11,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:11,697 | INFO     | all payload control threads have been joined
[2025-12-01 21:00:46] 2025-12-01 20:00:11,980 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,090 | INFO     | all job control threads have been joined
[2025-12-01 21:00:46] 2025-12-01 20:00:12,217 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,517 | INFO     | [data] control thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,575 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,630 | INFO     | [job] validate thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,633 | INFO     | [data] copytool_out thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,656 | INFO     | [data] copytool_in thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,703 | INFO     | [payload] control thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:12,930 | INFO     | [payload] failed_post thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:13,047 | INFO     | [payload] validate_post thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:13,096 | INFO     | [job] control thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:13,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:00:46] 2025-12-01 20:00:13,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 21:00:46] 2025-12-01 20:00:14,224 | INFO     | [job] queue monitor thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:17,259 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 21:00:46] 2025-12-01 20:00:22,310 | INFO     | [monitor] cgroup control has ended
[2025-12-01 21:00:46] 2025-12-01 20:00:23,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139865952180032)>', '<ExcThread(monitor, started 139865500919552)>']
[2025-12-01 21:00:46] 2025-12-01 20:00:28,339 | INFO     | all workflow threads have been joined
[2025-12-01 21:00:46] 2025-12-01 20:00:28,339 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 21:00:46] 2025-12-01 20:00:28,340 | INFO     | traces error code: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:28,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 21:00:46] 2025-12-01 20:00:41,587 | INFO     | PID=3855 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 21:00:46] 2025-12-01 20:00:41,587 | INFO     | .. there are 9 such processes running
[2025-12-01 21:00:46] 2025-12-01 20:00:41,592 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 21:00:46] 2025-12-01 20:00:41,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 21:00:46] 2025-12-01 20:00:41,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 21:00:46] 2025-12-01 20:00:41,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 21:00:46] 2025-12-01 20:00:41,593 | INFO     | [monitor] control thread has ended
[2025-12-01 21:00:46] 2025-12-01 20:00:41,972 [wrapper] ==== pilot stdout END ====
[2025-12-01 21:00:46] 2025-12-01 20:00:42,068 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 21:00:46] 2025-12-01 20:00:42,138 [wrapper] pilotpid: 3855
[2025-12-01 21:00:46] 2025-12-01 20:00:42,201 [wrapper] Pilot exit status: 0
[2025-12-01 21:00:46] 2025-12-01 20:00:42,579 [wrapper] pandaids: 6900797843
[2025-12-01 21:00:46] 2025-12-01 20:00:43,378 [wrapper] cleanup supervisor_pilot 28743 3856
[2025-12-01 21:00:46] 2025-12-01 20:00:43,496 [wrapper] Test setup, not cleaning
[2025-12-01 21:00:46] 2025-12-01 20:00:43,559 [wrapper] apfmon messages muted
[2025-12-01 21:00:46] 2025-12-01 20:00:43,649 [wrapper] ==== wrapper stdout END ====
[2025-12-01 21:00:46] 2025-12-01 20:00:43,775 [wrapper] ==== wrapper stderr END ====
[2025-12-01 21:00:46]  *** Error codes and diagnostics ***
[2025-12-01 21:00:46]     "exeErrorCode": 0,
[2025-12-01 21:00:46]     "exeErrorDiag": "",
[2025-12-01 21:00:46]     "pilotErrorCode": 0,
[2025-12-01 21:00:46]     "pilotErrorDiag": "",
[2025-12-01 21:00:46]  *** Listing of results directory ***
[2025-12-01 21:00:46] total 1320236
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-01 21:00:46] -rwx------. 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:01 queuedata.json
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc       100 Nov 30 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 21:00:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 21:33 run_atlas
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc       105 Nov 30 21:33 job.xml
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc 409708637 Nov 30 21:33 EVNT.47483658._003504.pool.root.1
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc      6392 Nov 30 21:33 init_data.xml
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc     15847 Nov 30 21:33 start_atlas.sh
[2025-12-01 21:00:46] drwxrwx--x. 2 boinc boinc        68 Nov 30 21:33 shared
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc    590112 Nov 30 21:33 input.tar.gz
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc         0 Nov 30 21:33 boinc_lockfile
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc      2788 Nov 30 21:33 pandaJob.out
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc    993245 Nov 30 21:37 agis_schedconf.cvmfs.json
[2025-12-01 21:00:46] drwx------. 5 boinc boinc      4096 Nov 30 21:37 pilot3
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc       533 Dec  1 20:34 boinc_task_state.xml
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc 911117512 Dec  1 20:57 HITS.47556173._004605.pool.root.1
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc      1031 Dec  1 20:58 memory_monitor_summary.json
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc   1516240 Dec  1 20:58 agis_ddmendpoints.agis.ALL.json
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc   2453300 Dec  1 20:58 log.47556173._004605.job.log.tgz.1
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc      8633 Dec  1 21:00 heartbeat.json
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc        29 Dec  1 21:00 wrapper_checkpoint.txt
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc      8192 Dec  1 21:00 boinc_mmap_file
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc        95 Dec  1 21:00 pilot_heartbeat.json
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc       819 Dec  1 21:00 pilotlog.txt
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc  11142600 Dec  1 21:00 log.47556173._004605.job.log.1
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc       353 Dec  1 21:00 output.list
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc       620 Dec  1 21:00 runtime_log
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc  13619200 Dec  1 21:00 result.tar.gz
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc      8833 Dec  1 21:00 runtime_log.err
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc       662 Dec  1 21:00 EbpNDmZ11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1yKKDmw4oxem.diag
[2025-12-01 21:00:46] -rw-r--r--. 1 boinc boinc     21506 Dec  1 21:00 stderr.txt
[2025-12-01 21:00:46] HITS file was successfully produced:
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc 911117512 Dec  1 20:57 shared/HITS.pool.root.1
[2025-12-01 21:00:46]  *** Contents of shared directory: ***
[2025-12-01 21:00:46] total 1303768
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc 409708637 Nov 30 21:33 ATLAS.root_0
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc     15847 Nov 30 21:33 start_atlas.sh
[2025-12-01 21:00:46] -rw-r--r--. 2 boinc boinc    590112 Nov 30 21:33 input.tar.gz
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc 911117512 Dec  1 20:57 HITS.pool.root.1
[2025-12-01 21:00:46] -rw-------. 1 boinc boinc  13619200 Dec  1 21:00 result.tar.gz
21:00:47 (32446): run_atlas exited; CPU time 315427.214674
21:00:47 (32446): called boinc_finish(0)

</stderr_txt>
]]>

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