Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:11:24 (3619433): wrapper (7.7.26015): starting
14:11:24 (3619433): wrapper: running run_atlas (--nthreads 4)
[2025-12-01 14:11:24] Arguments: --nthreads 4
[2025-12-01 14:11:24] Threads: 4
[2025-12-01 14:11:24] Checking for CVMFS
[2025-12-01 14:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 14:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 14:11:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 14:11:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 14:11:24] 2.9.2.0 844198 18570 99244 153518 2 81 35950658 36864000 0 130560 1 7316618 99.954 838492 919 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-01 14:11:24] CVMFS is ok
[2025-12-01 14:11:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 14:11:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 14:11:24] Further information can be found at the LHC@home message board.
[2025-12-01 14:11:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 14:11:24] Checking for apptainer binary...
[2025-12-01 14:11:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 14:11:24] Running /usr/bin/apptainer --version
[2025-12-01 14:11:24] apptainer version 1.4.1-1.1
[2025-12-01 14:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 14:11:24] thA309
[2025-12-01 14:11:24] apptainer works
[2025-12-01 14:11:24] Set ATHENA_PROC_NUMBER=4
[2025-12-01 14:11:24] Set ATHENA_CORE_NUMBER=4
[2025-12-01 14:11:24] Starting ATLAS job with PandaID=6900590381
[2025-12-01 14:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 21:07:09]  *** The last 200 lines of the pilot log: ***
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | job 6900590381 has completed (purged errors)
[2025-12-01 21:07:09] 2025-12-01 20:06:46,082 | INFO     | overall cleanup function is called
[2025-12-01 21:07:09] 2025-12-01 20:06:47,092 | INFO     | --- collectZombieJob: --- 10, [3629787]
[2025-12-01 21:07:09] 2025-12-01 20:06:47,092 | INFO     | zombie collector waiting for pid 3629787
[2025-12-01 21:07:09] 2025-12-01 20:06:47,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 21:07:09] 2025-12-01 20:06:47,092 | INFO     | collected zombie processes
[2025-12-01 21:07:09] 2025-12-01 20:06:47,092 | INFO     | will attempt to kill all subprocesses of pid=3629787
[2025-12-01 21:07:09] 2025-12-01 20:06:47,139 | INFO     | process IDs to be killed: [3629787] (in reverse order)
[2025-12-01 21:07:09] 2025-12-01 20:06:47,172 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 21:07:09] 2025-12-01 20:06:47,172 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 21:07:09] 2025-12-01 20:06:47,174 | INFO     | did not find any defunct processes belonging to 3629787
[2025-12-01 21:07:09] 2025-12-01 20:06:47,175 | INFO     | did not find any defunct processes belonging to 3629787
[2025-12-01 21:07:09] 2025-12-01 20:06:47,176 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 21:07:09] 2025-12-01 20:06:47,176 | INFO     | ready for new job
[2025-12-01 21:07:09] 2025-12-01 20:06:47,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 21:07:09] 2025-12-01 20:06:47,177 | INFO     | ***************************************
[2025-12-01 21:07:09] 2025-12-01 20:06:47,177 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 21:07:09] 2025-12-01 20:06:47,177 | INFO     | ***************************************
[2025-12-01 21:07:09] 2025-12-01 20:06:47,177 | INFO     | 
[2025-12-01 21:07:09] 2025-12-01 20:06:47,178 | INFO     | architecture information:
[2025-12-01 21:07:09] 2025-12-01 20:06:47,178 | INFO     | executing command: cat /etc/os-release
[2025-12-01 21:07:09] 2025-12-01 20:06:47,192 | INFO     | cat /etc/os-release:
[2025-12-01 21:07:09] NAME="CentOS Linux"
[2025-12-01 21:07:09] VERSION="7 (Core)"
[2025-12-01 21:07:09] ID="centos"
[2025-12-01 21:07:09] ID_LIKE="rhel fedora"
[2025-12-01 21:07:09] VERSION_ID="7"
[2025-12-01 21:07:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 21:07:09] ANSI_COLOR="0;31"
[2025-12-01 21:07:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 21:07:09] HOME_URL="https://www.centos.org/"
[2025-12-01 21:07:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 21:07:09] 
[2025-12-01 21:07:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 21:07:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 21:07:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 21:07:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 21:07:09] 
[2025-12-01 21:07:09] 2025-12-01 20:06:47,193 | INFO     | ***************************************
[2025-12-01 21:07:09] 2025-12-01 20:06:47,696 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | INFO     | sufficient remaining disk space (220534407168 B)
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | INFO     | update_server=False
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 21:07:09] 2025-12-01 20:06:47,715 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-01 21:07:09] 2025-12-01 20:06:47,716 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 21:07:09] 2025-12-01 20:06:47,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 21:07:09] 2025-12-01 20:06:47,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 21:07:09] 2025-12-01 20:06:47,810 | INFO     | all data control threads have been joined
[2025-12-01 21:07:09] 2025-12-01 20:06:48,032 | INFO     | all job control threads have been joined
[2025-12-01 21:07:09] 2025-12-01 20:06:48,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 21:07:09] 2025-12-01 20:06:48,173 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 21:07:09] 2025-12-01 20:06:48,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:07:09] 2025-12-01 20:06:48,173 | INFO     | will abort loop
[2025-12-01 21:07:09] 2025-12-01 20:06:48,721 | INFO     | [job] retrieve thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:48,721 | INFO     | [job] queue monitor thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:48,772 | INFO     | [payload] validate_post thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:48,816 | INFO     | [data] control thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:48,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 21:07:09] 2025-12-01 20:06:48,946 | INFO     | all payload control threads have been joined
[2025-12-01 21:07:09] 2025-12-01 20:06:49,038 | INFO     | [job] control thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,178 | INFO     | [job] job monitor thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,257 | INFO     | [payload] failed_post thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,328 | INFO     | [data] copytool_in thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,731 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,914 | INFO     | [job] validate thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,952 | INFO     | [payload] control thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:49,977 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:50,222 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:50,892 | INFO     | [data] copytool_out thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:51,722 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:06:57,824 | INFO     | job.realtimelogging is not enabled
[2025-12-01 21:07:09] 2025-12-01 20:06:58,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 21:07:09] 2025-12-01 20:07:03,799 | INFO     | [monitor] cgroup control has ended
[2025-12-01 21:07:09] 2025-12-01 20:07:04,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140334460114752)>', '<ExcThread(monitor, started 140333660747520)>']
[2025-12-01 21:07:09] 2025-12-01 20:07:04,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 21:07:09] 2025-12-01 20:07:04,807 | INFO     | [monitor] control thread has ended
[2025-12-01 21:07:09] 2025-12-01 20:07:09,532 | INFO     | all workflow threads have been joined
[2025-12-01 21:07:09] 2025-12-01 20:07:09,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 21:07:09] 2025-12-01 20:07:09,532 | INFO     | traces error code: 0
[2025-12-01 21:07:09] 2025-12-01 20:07:09,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 21:07:09] 2025-12-01 20:07:09,613 [wrapper] ==== pilot stdout END ====
[2025-12-01 21:07:09] 2025-12-01 20:07:09,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 21:07:09] 2025-12-01 20:07:09,622 [wrapper] pilotpid: 3623209
[2025-12-01 21:07:09] 2025-12-01 20:07:09,626 [wrapper] Pilot exit status: 0
[2025-12-01 21:07:09] 2025-12-01 20:07:09,638 [wrapper] pandaids: 6900590381
[2025-12-01 21:07:09] 2025-12-01 20:07:09,661 [wrapper] cleanup supervisor_pilot 3676833 3623210
[2025-12-01 21:07:09] 2025-12-01 20:07:09,665 [wrapper] Test setup, not cleaning
[2025-12-01 21:07:09] 2025-12-01 20:07:09,668 [wrapper] apfmon messages muted
[2025-12-01 21:07:09] 2025-12-01 20:07:09,672 [wrapper] ==== wrapper stdout END ====
[2025-12-01 21:07:09] 2025-12-01 20:07:09,676 [wrapper] ==== wrapper stderr END ====
[2025-12-01 21:07:09]  *** Error codes and diagnostics ***
[2025-12-01 21:07:09]     "exeErrorCode": 0,
[2025-12-01 21:07:09]     "exeErrorDiag": "",
[2025-12-01 21:07:09]     "pilotErrorCode": 0,
[2025-12-01 21:07:09]     "pilotErrorDiag": "",
[2025-12-01 21:07:09]  *** Listing of results directory ***
[2025-12-01 21:07:09] total 1316576
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc      5112 Nov 28 01:59 queuedata.json
[2025-12-01 21:07:09] -rwx------ 1 boinc boinc     36292 Nov 28 01:59 runpilot2-wrapper.sh
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc       100 Dec  1 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 21:07:09] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 14:11 run_atlas
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc       105 Dec  1 14:11 job.xml
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc 410275535 Dec  1 14:11 EVNT.47483658._004438.pool.root.1
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc    590107 Dec  1 14:11 input.tar.gz
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc     15847 Dec  1 14:11 start_atlas.sh
[2025-12-01 21:07:09] drwxrwx--x 2 boinc boinc      4096 Dec  1 14:11 shared
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc         0 Dec  1 14:11 boinc_setup_complete
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc      6378 Dec  1 14:11 init_data.xml
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc         0 Dec  1 14:11 boinc_lockfile
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc      2785 Dec  1 14:11 pandaJob.out
[2025-12-01 21:07:09] -rw------- 1 boinc boinc    992126 Dec  1 14:11 agis_schedconf.cvmfs.json
[2025-12-01 21:07:09] drwx------ 5 boinc boinc      4096 Dec  1 14:11 pilot3
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc       531 Dec  1 21:02 boinc_task_state.xml
[2025-12-01 21:07:09] -rw------- 1 boinc boinc 924453479 Dec  1 21:06 HITS.47556185._002011.pool.root.1
[2025-12-01 21:07:09] -rw------- 1 boinc boinc      1028 Dec  1 21:06 memory_monitor_summary.json
[2025-12-01 21:07:09] -rw------- 1 boinc boinc   1516240 Dec  1 21:06 agis_ddmendpoints.agis.ALL.json
[2025-12-01 21:07:09] -rw------- 1 boinc boinc   1259263 Dec  1 21:06 log.47556185._002011.job.log.tgz.1
[2025-12-01 21:07:09] -rw------- 1 boinc boinc      8582 Dec  1 21:06 heartbeat.json
[2025-12-01 21:07:09] -rw------- 1 boinc boinc        95 Dec  1 21:06 pilot_heartbeat.json
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc      8192 Dec  1 21:07 boinc_mmap_file
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc        28 Dec  1 21:07 wrapper_checkpoint.txt
[2025-12-01 21:07:09] -rw------- 1 boinc boinc      4814 Dec  1 21:07 pilotlog.txt
[2025-12-01 21:07:09] -rw------- 1 boinc boinc   3513772 Dec  1 21:07 log.47556185._002011.job.log.1
[2025-12-01 21:07:09] -rw------- 1 boinc boinc       353 Dec  1 21:07 output.list
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc       620 Dec  1 21:07 runtime_log
[2025-12-01 21:07:09] -rw------- 1 boinc boinc   4792320 Dec  1 21:07 result.tar.gz
[2025-12-01 21:07:09] -rw------- 1 boinc boinc       665 Dec  1 21:07 xyiLDmm01i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoxKKDmDLTbNo.diag
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc      8898 Dec  1 21:07 runtime_log.err
[2025-12-01 21:07:09] -rw-r--r-- 1 boinc boinc     11681 Dec  1 21:07 stderr.txt
[2025-12-01 21:07:09] HITS file was successfully produced:
[2025-12-01 21:07:09] -rw------- 1 boinc boinc 924453479 Dec  1 21:06 shared/HITS.pool.root.1
[2025-12-01 21:07:09]  *** Contents of shared directory: ***
[2025-12-01 21:07:09] total 1308728
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc 410275535 Dec  1 14:11 ATLAS.root_0
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc    590107 Dec  1 14:11 input.tar.gz
[2025-12-01 21:07:09] -rw-r--r-- 2 boinc boinc     15847 Dec  1 14:11 start_atlas.sh
[2025-12-01 21:07:09] -rw------- 1 boinc boinc 924453479 Dec  1 21:06 HITS.pool.root.1
[2025-12-01 21:07:09] -rw------- 1 boinc boinc   4792320 Dec  1 21:07 result.tar.gz
21:07:11 (3619433): run_atlas exited; CPU time 97384.828679
21:07:11 (3619433): called boinc_finish(0)

</stderr_txt>
]]>

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