Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:27:52 (2708): wrapper (7.7.26015): starting
18:27:52 (2708): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 18:27:52] Arguments: --nthreads 8
[2025-11-30 18:27:52] Threads: 8
[2025-11-30 18:27:52] Checking for CVMFS
[2025-11-30 18:27:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 18:27:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 18:27:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 18:27:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 18:27:54] 2.11.2.0 2048 178235 137528 153489 1 84 22629077 25165825 2554 130560 10 59756641 99.871 33884698 2198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 18:27:54] CVMFS is ok
[2025-11-30 18:27:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 18:27:54] Checking for apptainer binary...
[2025-11-30 18:27:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 18:27:54] Running /usr/bin/apptainer --version
[2025-11-30 18:27:54] apptainer version 1.3.2-1.el7
[2025-11-30 18:27:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 18:28:05] cg-vwn398.simple-grid.lan
[2025-11-30 18:28:05] apptainer works
[2025-11-30 18:28:06] Set ATHENA_PROC_NUMBER=8
[2025-11-30 18:28:06] Set ATHENA_CORE_NUMBER=8
[2025-11-30 18:28:06] Starting ATLAS job with PandaID=6899463443
[2025-11-30 18:28:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 18:23:32]  *** The last 200 lines of the pilot log: ***
[2025-12-01 18:23:32] 2025-12-01 17:22:17,364 | INFO     | 85829s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-01 18:23:32] 2025-12-01 17:22:18,065 | INFO     | monitor loop #5746: job 0:6899463443 is in state 'finished'
[2025-12-01 18:23:32] 2025-12-01 17:22:18,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:32] 2025-12-01 17:22:19,373 | INFO     | time since job start (85824s) is within the limit (172800.0s)
[2025-12-01 18:23:32] 2025-12-01 17:22:20,571 | INFO     | monitor loop #5747: job 0:6899463443 is in state 'finished'
[2025-12-01 18:23:32] 2025-12-01 17:22:20,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:32] 2025-12-01 17:22:21,380 | INFO     | time since job start (85826s) is within the limit (172800.0s)
[2025-12-01 18:23:32] 2025-12-01 17:22:23,078 | INFO     | monitor loop #5748: job 0:6899463443 is in state 'finished'
[2025-12-01 18:23:32] 2025-12-01 17:22:23,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:32] 2025-12-01 17:22:23,386 | INFO     | time since job start (85828s) is within the limit (172800.0s)
[2025-12-01 18:23:32] 2025-12-01 17:22:25,393 | INFO     | time since job start (85830s) is within the limit (172800.0s)
[2025-12-01 18:23:32] 2025-12-01 17:22:25,583 | INFO     | monitor loop #5749: job 0:6899463443 is in state 'finished'
[2025-12-01 18:23:32] 2025-12-01 17:22:25,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:32] 2025-12-01 17:22:25,821 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 18:23:32] 2025-12-01 17:22:25,823 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 18:23:32] 2025-12-01 17:22:25,826 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6899463443/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 18:23:32] 2025-12-01 17:22:25,826 | INFO     | extracted standard info from prmon json
[2025-12-01 18:23:32] 2025-12-01 17:22:25,827 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 18:23:32] 2025-12-01 17:22:25,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 18:23:32] 2025-12-01 17:22:25,852 | INFO     | fitting pss+swap vs Time
[2025-12-01 18:23:32] 2025-12-01 17:22:25,854 | INFO     | sum of square deviations: 847225001059.0911
[2025-12-01 18:23:32] 2025-12-01 17:22:25,912 | INFO     | sum of deviations: 3064840588913.96
[2025-12-01 18:23:32] 2025-12-01 17:22:25,912 | INFO     | mean x: 1764567010.6266093
[2025-12-01 18:23:32] 2025-12-01 17:22:25,912 | INFO     | mean y: 2827266.13018598
[2025-12-01 18:23:32] 2025-12-01 17:22:25,913 | INFO     | intersect: -6380502533.23418
[2025-12-01 18:23:32] 2025-12-01 17:22:25,914 | INFO     | chi2: 24.390307000502844
[2025-12-01 18:23:32] 2025-12-01 17:22:25,917 | INFO     | sum of square deviations: 838167534850.2177
[2025-12-01 18:23:32] 2025-12-01 17:22:25,981 | INFO     | sum of deviations: 3536489727167.402
[2025-12-01 18:23:32] 2025-12-01 17:22:25,981 | INFO     | mean x: 1764566858.1306534
[2025-12-01 18:23:32] 2025-12-01 17:22:25,981 | INFO     | mean y: 2835206.234027279
[2025-12-01 18:23:32] 2025-12-01 17:22:25,981 | INFO     | intersect: -7442421627.525685
[2025-12-01 18:23:32] 2025-12-01 17:22:25,983 | INFO     | chi2: 21.00829070755209
[2025-12-01 18:23:32] 2025-12-01 17:22:25,983 | INFO     | current chi2=21.00829070755209 (change=13.866230928872808 %)
[2025-12-01 18:23:32] 2025-12-01 17:22:25,983 | INFO     | right removable region: 1392
[2025-12-01 18:23:32] 2025-12-01 17:22:25,985 | INFO     | sum of square deviations: 838166574100.2161
[2025-12-01 18:23:32] 2025-12-01 17:22:26,041 | INFO     | sum of deviations: 2484644121051.634
[2025-12-01 18:23:32] 2025-12-01 17:22:26,042 | INFO     | mean x: 1764567163.1306534
[2025-12-01 18:23:32] 2025-12-01 17:22:26,042 | INFO     | mean y: 2837033.3316582916
[2025-12-01 18:23:32] 2025-12-01 17:22:26,042 | INFO     | intersect: -5228010346.593948
[2025-12-01 18:23:32] 2025-12-01 17:22:26,044 | INFO     | chi2: 19.750971242426527
[2025-12-01 18:23:32] 2025-12-01 17:22:26,044 | INFO     | current chi2=19.750971242426527 (change=19.021227399805465 %)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,044 | INFO     | left removable region: 10
[2025-12-01 18:23:32] 2025-12-01 17:22:26,046 | INFO     | sum of square deviations: 818466927774.5469
[2025-12-01 18:23:32] 2025-12-01 17:22:26,112 | INFO     | sum of deviations: 2578336180770.1963
[2025-12-01 18:23:32] 2025-12-01 17:22:26,113 | INFO     | mean x: 1764567132.6396527
[2025-12-01 18:23:32] 2025-12-01 17:22:26,113 | INFO     | mean y: 2855041.897973951
[2025-12-01 18:23:32] 2025-12-01 17:22:26,113 | INFO     | intersect: -5555887928.759936
[2025-12-01 18:23:32] 2025-12-01 17:22:26,115 | INFO     | chi2: 12.42628441768608
[2025-12-01 18:23:32] 2025-12-01 17:22:26,115 | INFO     | current memory leak: 3.15 B/s (using 1382 data points, chi2=12.43)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,116 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,116 | INFO     | ..............................
[2025-12-01 18:23:32] 2025-12-01 17:22:26,116 | INFO     | . Timing measurements:
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . get job = 0 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . initial setup = 6 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . payload setup = 153 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . stage-in = 0 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . payload execution = 85390 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . stage-out = 5 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | . log creation = 1 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,117 | INFO     | ..............................
[2025-12-01 18:23:32] 2025-12-01 17:22:26,434 | INFO     | 
[2025-12-01 18:23:32] 2025-12-01 17:22:26,434 | INFO     | job summary report
[2025-12-01 18:23:32] 2025-12-01 17:22:26,434 | INFO     | --------------------------------------------------
[2025-12-01 18:23:32] 2025-12-01 17:22:26,434 | INFO     | PanDA job id: 6899463443
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | task id: 47556173
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | errors: (none)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | pilot state: finished 
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | transexitcode: 0
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | exeerrorcode: 0
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | exeerrordiag: 
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | exitcode: 0
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | exitmsg: OK
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | cpuconsumptiontime: 318472 s
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | nevents: 1000
[2025-12-01 18:23:32] 2025-12-01 17:22:26,435 | INFO     | neventsw: 0
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | pid: 13084
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | pgrp: 13084
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | corecount: 8
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | event service: False
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | sizes: {0: 2283488, 1: 2284174, 2: 2284373, 12: 2284373, 23: 2284401, 34: 2284429, 45: 2284585, 55: 2284613, 66: 2284641, 77: 2284669, 87: 2284987, 88: 2285295, 85
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | --------------------------------------------------
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | 
[2025-12-01 18:23:32] 2025-12-01 17:22:26,436 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-01 18:23:32] 2025-12-01 17:22:26,560 | INFO     | PID=6496 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 18:23:32] 2025-12-01 17:22:26,560 | INFO     | .. there are 9 such processes running
[2025-12-01 18:23:32] 2025-12-01 17:22:26,845 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 18:23:32] 2025-12-01 17:22:26,848 | INFO     | job 6899463443 has completed (purged errors)
[2025-12-01 18:23:32] 2025-12-01 17:22:26,848 | INFO     | overall cleanup function is called
[2025-12-01 18:23:32] 2025-12-01 17:22:27,866 | INFO     | --- collectZombieJob: --- 10, [13084]
[2025-12-01 18:23:32] 2025-12-01 17:22:27,866 | INFO     | zombie collector waiting for pid 13084
[2025-12-01 18:23:32] 2025-12-01 17:22:27,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 18:23:32] 2025-12-01 17:22:27,867 | INFO     | collected zombie processes
[2025-12-01 18:23:32] 2025-12-01 17:22:27,867 | INFO     | will attempt to kill all subprocesses of pid=13084
[2025-12-01 18:23:32] 2025-12-01 17:22:27,984 | INFO     | process IDs to be killed: [13084] (in reverse order)
[2025-12-01 18:23:32] 2025-12-01 17:22:28,543 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 18:23:32] 2025-12-01 17:22:28,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 18:23:32] 2025-12-01 17:22:28,546 | INFO     | did not find any defunct processes belonging to 13084
[2025-12-01 18:23:32] 2025-12-01 17:22:28,549 | INFO     | did not find any defunct processes belonging to 13084
[2025-12-01 18:23:32] 2025-12-01 17:22:28,590 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 18:23:32] 2025-12-01 17:22:28,591 | INFO     | ready for new job
[2025-12-01 18:23:32] 2025-12-01 17:22:28,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 18:23:32] 2025-12-01 17:22:28,602 | INFO     | ***************************************
[2025-12-01 18:23:32] 2025-12-01 17:22:28,602 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 18:23:32] 2025-12-01 17:22:28,602 | INFO     | ***************************************
[2025-12-01 18:23:32] 2025-12-01 17:22:28,603 | INFO     | 
[2025-12-01 18:23:32] 2025-12-01 17:22:28,603 | INFO     | pilot is running in a VM
[2025-12-01 18:23:32] 2025-12-01 17:22:28,603 | INFO     | architecture information:
[2025-12-01 18:23:32] 2025-12-01 17:22:28,607 | INFO     | executing command: cat /etc/os-release
[2025-12-01 18:23:32] 2025-12-01 17:22:28,802 | INFO     | cat /etc/os-release:
[2025-12-01 18:23:32] NAME="CentOS Linux"
[2025-12-01 18:23:32] VERSION="7 (Core)"
[2025-12-01 18:23:32] ID="centos"
[2025-12-01 18:23:32] ID_LIKE="rhel fedora"
[2025-12-01 18:23:32] VERSION_ID="7"
[2025-12-01 18:23:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 18:23:32] ANSI_COLOR="0;31"
[2025-12-01 18:23:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 18:23:32] HOME_URL="https://www.centos.org/"
[2025-12-01 18:23:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 18:23:32] 
[2025-12-01 18:23:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 18:23:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 18:23:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 18:23:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 18:23:32] 
[2025-12-01 18:23:32] 2025-12-01 17:22:28,802 | INFO     | ***************************************
[2025-12-01 18:23:32] 2025-12-01 17:22:29,305 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-01 18:23:32] 2025-12-01 17:22:29,458 | INFO     | sufficient remaining disk space (488033484800 B)
[2025-12-01 18:23:32] 2025-12-01 17:22:29,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 18:23:32] 2025-12-01 17:22:29,458 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 18:23:32] 2025-12-01 17:22:29,458 | INFO     | update_server=False
[2025-12-01 18:23:32] 2025-12-01 17:22:29,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 18:23:32] 2025-12-01 17:22:29,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 18:23:32] 2025-12-01 17:22:29,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:23:32] 2025-12-01 17:22:29,460 | INFO     | aborting loop
[2025-12-01 18:23:32] 2025-12-01 17:22:29,832 | INFO     | all data control threads have been joined
[2025-12-01 18:23:32] 2025-12-01 17:22:29,953 | INFO     | all payload control threads have been joined
[2025-12-01 18:23:32] 2025-12-01 17:22:29,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 18:23:32] 2025-12-01 17:22:30,465 | INFO     | [job] job monitor thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:30,466 | INFO     | [job] retrieve thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:30,504 | INFO     | [payload] failed_post thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:30,576 | INFO     | [data] copytool_in thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:30,838 | INFO     | [data] control thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:30,959 | INFO     | [payload] control thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,059 | INFO     | all job control threads have been joined
[2025-12-01 18:23:32] 2025-12-01 17:22:31,252 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:23:32] 2025-12-01 17:22:31,449 | INFO     | [payload] validate_post thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,623 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,822 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,900 | INFO     | [job] validate thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,904 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:31,966 | INFO     | [data] copytool_out thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:32,065 | INFO     | [job] control thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:32,258 | INFO     | [job] queue monitor thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:33,468 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:39,709 | INFO     | job.realtimelogging is not enabled
[2025-12-01 18:23:32] 2025-12-01 17:22:40,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 18:23:32] 2025-12-01 17:22:58,738 | INFO     | PID=6496 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 18:23:32] 2025-12-01 17:22:58,739 | INFO     | .. there are 9 such processes running
[2025-12-01 18:23:32] 2025-12-01 17:22:58,739 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 18:23:32] 2025-12-01 17:22:58,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 18:23:32] 2025-12-01 17:22:58,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 18:23:32] 2025-12-01 17:23:24,341 | INFO     | [monitor] cgroup control has ended
[2025-12-01 18:23:32] 2025-12-01 17:23:25,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628957259584)>', '<ExcThread(monitor, started 140628218337024)>']
[2025-12-01 18:23:32] 2025-12-01 17:23:25,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 18:23:32] 2025-12-01 17:23:25,900 | INFO     | [monitor] control thread has ended
[2025-12-01 18:23:32] 2025-12-01 17:23:30,379 | INFO     | all workflow threads have been joined
[2025-12-01 18:23:32] 2025-12-01 17:23:30,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 18:23:32] 2025-12-01 17:23:30,380 | INFO     | traces error code: 0
[2025-12-01 18:23:32] 2025-12-01 17:23:30,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 18:23:32] 2025-12-01 17:23:30,532 [wrapper] ==== pilot stdout END ====
[2025-12-01 18:23:32] 2025-12-01 17:23:30,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 18:23:32] 2025-12-01 17:23:30,542 [wrapper] pilotpid: 6496
[2025-12-01 18:23:32] 2025-12-01 17:23:30,547 [wrapper] Pilot exit status: 0
[2025-12-01 18:23:32] 2025-12-01 17:23:30,567 [wrapper] pandaids: 6899463443
[2025-12-01 18:23:32] 2025-12-01 17:23:30,608 [wrapper] cleanup supervisor_pilot 10995 6497
[2025-12-01 18:23:32] 2025-12-01 17:23:30,623 [wrapper] Test setup, not cleaning
[2025-12-01 18:23:32] 2025-12-01 17:23:30,626 [wrapper] apfmon messages muted
[2025-12-01 18:23:32] 2025-12-01 17:23:30,629 [wrapper] ==== wrapper stdout END ====
[2025-12-01 18:23:32] 2025-12-01 17:23:30,631 [wrapper] ==== wrapper stderr END ====
[2025-12-01 18:23:32]  *** Error codes and diagnostics ***
[2025-12-01 18:23:32]     "exeErrorCode": 0,
[2025-12-01 18:23:32]     "exeErrorDiag": "",
[2025-12-01 18:23:32]     "pilotErrorCode": 0,
[2025-12-01 18:23:32]     "pilotErrorDiag": "",
[2025-12-01 18:23:32]  *** Listing of results directory ***
[2025-12-01 18:23:32] total 1323484
[2025-12-01 18:23:32] -rwx------. 1 boinc boinc     36292 Nov 27 09:46 runpilot2-wrapper.sh
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:46 queuedata.json
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc       100 Nov 30 18:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 18:23:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 18:27 run_atlas
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc       105 Nov 30 18:27 job.xml
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc 409638835 Nov 30 18:27 EVNT.47483658._003323.pool.root.1
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc    590102 Nov 30 18:27 input.tar.gz
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc      6392 Nov 30 18:27 init_data.xml
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:27 start_atlas.sh
[2025-12-01 18:23:32] drwxrwx--x. 2 boinc boinc        68 Nov 30 18:27 shared
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc         0 Nov 30 18:27 boinc_lockfile
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc      2787 Nov 30 18:28 pandaJob.out
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc    993063 Nov 30 18:31 agis_schedconf.cvmfs.json
[2025-12-01 18:23:32] drwx------. 5 boinc boinc      4096 Nov 30 18:31 pilot3
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc       533 Dec  1 17:53 boinc_task_state.xml
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc 913933111 Dec  1 18:19 HITS.47556173._002797.pool.root.1
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc      1033 Dec  1 18:20 memory_monitor_summary.json
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc   1516240 Dec  1 18:20 agis_ddmendpoints.agis.ALL.json
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc   2476362 Dec  1 18:20 log.47556173._002797.job.log.tgz.1
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc        95 Dec  1 18:22 pilot_heartbeat.json
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc      8623 Dec  1 18:22 heartbeat.json
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc        29 Dec  1 18:23 wrapper_checkpoint.txt
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc      8192 Dec  1 18:23 boinc_mmap_file
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc      4956 Dec  1 18:23 pilotlog.txt
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc  11405454 Dec  1 18:23 log.47556173._002797.job.log.1
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc       353 Dec  1 18:23 output.list
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc       620 Dec  1 18:23 runtime_log
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc  13905920 Dec  1 18:23 result.tar.gz
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc      8833 Dec  1 18:23 runtime_log.err
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc       662 Dec  1 18:23 omLNDmtomi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdiNKDmUl3uCn.diag
[2025-12-01 18:23:32] -rw-r--r--. 1 boinc boinc     21488 Dec  1 18:23 stderr.txt
[2025-12-01 18:23:32] HITS file was successfully produced:
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc 913933111 Dec  1 18:19 shared/HITS.pool.root.1
[2025-12-01 18:23:32]  *** Contents of shared directory: ***
[2025-12-01 18:23:32] total 1306732
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc 409638835 Nov 30 18:27 ATLAS.root_0
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc    590102 Nov 30 18:27 input.tar.gz
[2025-12-01 18:23:32] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:27 start_atlas.sh
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc 913933111 Dec  1 18:19 HITS.pool.root.1
[2025-12-01 18:23:32] -rw-------. 1 boinc boinc  13905920 Dec  1 18:23 result.tar.gz
18:23:34 (2708): run_atlas exited; CPU time 319093.665683
18:23:34 (2708): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN