Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:03:15 (21864): wrapper (7.7.26015): starting
19:03:15 (21864): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 19:03:15] Arguments: --nthreads 8
[2025-11-30 19:03:15] Threads: 8
[2025-11-30 19:03:15] Checking for CVMFS
[2025-11-30 19:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 19:03:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 19:03:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 19:03:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 19:03:18] 2.11.2.0 31738 291300 137872 153489 2 85 23340285 25165824 2504 130560 10 125073899 99.873 81244104 2786 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 19:03:18] CVMFS is ok
[2025-11-30 19:03:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 19:03:18] Checking for apptainer binary...
[2025-11-30 19:03:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 19:03:18] Running /usr/bin/apptainer --version
[2025-11-30 19:03:18] apptainer version 1.3.2-1.el7
[2025-11-30 19:03:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 19:03:21] cg-vwn375.simple-grid.lan
[2025-11-30 19:03:21] apptainer works
[2025-11-30 19:03:21] Set ATHENA_PROC_NUMBER=8
[2025-11-30 19:03:21] Set ATHENA_CORE_NUMBER=8
[2025-11-30 19:03:21] Starting ATLAS job with PandaID=6891592559
[2025-11-30 19:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 18:23:20]  *** The last 200 lines of the pilot log: ***
[2025-12-01 18:23:20] 2025-12-01 17:22:31,629 | INFO     | monitor loop #5584: job 0:6891592559 is in state 'finished'
[2025-12-01 18:23:20] 2025-12-01 17:22:31,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:20] 2025-12-01 17:22:31,636 | INFO     | time since job start (83748s) is within the limit (172800.0s)
[2025-12-01 18:23:20] 2025-12-01 17:22:33,643 | INFO     | time since job start (83750s) is within the limit (172800.0s)
[2025-12-01 18:23:20] 2025-12-01 17:22:34,132 | INFO     | monitor loop #5585: job 0:6891592559 is in state 'finished'
[2025-12-01 18:23:20] 2025-12-01 17:22:34,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:20] 2025-12-01 17:22:35,650 | INFO     | time since job start (83752s) is within the limit (172800.0s)
[2025-12-01 18:23:20] 2025-12-01 17:22:36,636 | INFO     | monitor loop #5586: job 0:6891592559 is in state 'finished'
[2025-12-01 18:23:20] 2025-12-01 17:22:36,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:20] 2025-12-01 17:22:36,893 | INFO     | PID=25636 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 18:23:20] 2025-12-01 17:22:36,893 | INFO     | .. there are 9 such processes running
[2025-12-01 18:23:20] 2025-12-01 17:22:37,893 | INFO     | time since job start (83754s) is within the limit (172800.0s)
[2025-12-01 18:23:20] 2025-12-01 17:22:39,141 | INFO     | monitor loop #5587: job 0:6891592559 is in state 'finished'
[2025-12-01 18:23:20] 2025-12-01 17:22:39,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 18:23:20] 2025-12-01 17:22:39,903 | INFO     | time since job start (83756s) is within the limit (172800.0s)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,001 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 18:23:20] 2025-12-01 17:22:40,002 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 18:23:20] 2025-12-01 17:22:40,004 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6891592559/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,005 | INFO     | extracted standard info from prmon json
[2025-12-01 18:23:20] 2025-12-01 17:22:40,005 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 18:23:20] 2025-12-01 17:22:40,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 18:23:20] 2025-12-01 17:22:40,043 | INFO     | fitting pss+swap vs Time
[2025-12-01 18:23:20] 2025-12-01 17:22:40,045 | INFO     | sum of square deviations: 785173509813.2017
[2025-12-01 18:23:20] 2025-12-01 17:22:40,123 | INFO     | sum of deviations: 2862235402428.8022
[2025-12-01 18:23:20] 2025-12-01 17:22:40,123 | INFO     | mean x: 1764568062.104182
[2025-12-01 18:23:20] 2025-12-01 17:22:40,124 | INFO     | mean y: 2834063.4027879676
[2025-12-01 18:23:20] 2025-12-01 17:22:40,124 | INFO     | intersect: -6429641197.449238
[2025-12-01 18:23:20] 2025-12-01 17:22:40,126 | INFO     | chi2: 23.331376029684677
[2025-12-01 18:23:20] 2025-12-01 17:22:40,128 | INFO     | sum of square deviations: 776564681829.5875
[2025-12-01 18:23:20] 2025-12-01 17:22:40,187 | INFO     | sum of deviations: 3321662860124.5815
[2025-12-01 18:23:20] 2025-12-01 17:22:40,187 | INFO     | mean x: 1764567909.6082475
[2025-12-01 18:23:20] 2025-12-01 17:22:40,187 | INFO     | mean y: 2842201.01988218
[2025-12-01 18:23:20] 2025-12-01 17:22:40,187 | INFO     | intersect: -7544886696.081329
[2025-12-01 18:23:20] 2025-12-01 17:22:40,189 | INFO     | chi2: 19.998150806398698
[2025-12-01 18:23:20] 2025-12-01 17:22:40,189 | INFO     | current chi2=19.998150806398698 (change=14.286449367774503 %)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,190 | INFO     | right removable region: 1357
[2025-12-01 18:23:20] 2025-12-01 17:22:40,191 | INFO     | sum of square deviations: 776563763779.5876
[2025-12-01 18:23:20] 2025-12-01 17:22:40,252 | INFO     | sum of deviations: 2287267850552.5
[2025-12-01 18:23:20] 2025-12-01 17:22:40,252 | INFO     | mean x: 1764568214.6082475
[2025-12-01 18:23:20] 2025-12-01 17:22:40,252 | INFO     | mean y: 2844247.1701030927
[2025-12-01 18:23:20] 2025-12-01 17:22:40,252 | INFO     | intersect: -5194462575.04961
[2025-12-01 18:23:20] 2025-12-01 17:22:40,254 | INFO     | chi2: 18.545140476265587
[2025-12-01 18:23:20] 2025-12-01 17:22:40,254 | INFO     | current chi2=18.545140476265587 (change=20.514158904856394 %)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,255 | INFO     | left removable region: 10
[2025-12-01 18:23:20] 2025-12-01 17:22:40,256 | INFO     | sum of square deviations: 757845433909.468
[2025-12-01 18:23:20] 2025-12-01 17:22:40,299 [wrapper] supervise_pilot (15 min periods counter: 94)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,320 | INFO     | sum of deviations: 2353526419365.495
[2025-12-01 18:23:20] 2025-12-01 17:22:40,320 | INFO     | mean x: 1764568184.1172976
[2025-12-01 18:23:20] 2025-12-01 17:22:40,320 | INFO     | mean y: 2863030.6867112103
[2025-12-01 18:23:20] 2025-12-01 17:22:40,320 | INFO     | intersect: -5477090604.011797
[2025-12-01 18:23:20] 2025-12-01 17:22:40,322 | INFO     | chi2: 11.025969088574838
[2025-12-01 18:23:20] 2025-12-01 17:22:40,322 | INFO     | current memory leak: 3.11 B/s (using 1347 data points, chi2=11.03)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | ..............................
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | . Timing measurements:
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | . get job = 0 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | . initial setup = 8 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,324 | INFO     | . payload setup = 164 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,325 | INFO     | . stage-in = 0 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,325 | INFO     | . payload execution = 83290 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,325 | INFO     | . stage-out = 6 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,325 | INFO     | . log creation = 2 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,325 | INFO     | ..............................
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | job summary report
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | --------------------------------------------------
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | PanDA job id: 6891592559
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | task id: 47493068
[2025-12-01 18:23:20] 2025-12-01 17:22:40,567 | INFO     | errors: (none)
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | pilot state: finished 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | transexitcode: 0
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | exeerrorcode: 0
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | exeerrordiag: 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | exitcode: 0
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | exitmsg: OK
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | cpuconsumptiontime: 312786 s
[2025-12-01 18:23:20] 2025-12-01 17:22:40,568 | INFO     | nevents: 1000
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | neventsw: 0
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | pid: 32259
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | pgrp: 32259
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | corecount: 8
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | event service: False
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | sizes: {0: 2284077, 1: 2284332, 12: 2284332, 23: 2284360, 34: 2284388, 44: 2284416, 55: 2284572, 66: 2284600, 77: 2284628, 87: 2284684, 98: 2284712, 100: 2285282, 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | --------------------------------------------------
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | 
[2025-12-01 18:23:20] 2025-12-01 17:22:40,569 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-01 18:23:20] 2025-12-01 17:22:41,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 18:23:20] 2025-12-01 17:22:41,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,022 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 18:23:20] 2025-12-01 17:22:41,022 | INFO     | job 6891592559 has completed (purged errors)
[2025-12-01 18:23:20] 2025-12-01 17:22:41,022 | INFO     | overall cleanup function is called
[2025-12-01 18:23:20] 2025-12-01 17:22:42,040 | INFO     | --- collectZombieJob: --- 10, [32259]
[2025-12-01 18:23:20] 2025-12-01 17:22:42,040 | INFO     | zombie collector waiting for pid 32259
[2025-12-01 18:23:20] 2025-12-01 17:22:42,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 18:23:20] 2025-12-01 17:22:42,040 | INFO     | collected zombie processes
[2025-12-01 18:23:20] 2025-12-01 17:22:42,040 | INFO     | will attempt to kill all subprocesses of pid=32259
[2025-12-01 18:23:20] 2025-12-01 17:22:42,159 | INFO     | process IDs to be killed: [32259] (in reverse order)
[2025-12-01 18:23:20] 2025-12-01 17:22:42,750 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 18:23:20] 2025-12-01 17:22:42,751 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 18:23:20] 2025-12-01 17:22:42,754 | INFO     | did not find any defunct processes belonging to 32259
[2025-12-01 18:23:20] 2025-12-01 17:22:42,756 | INFO     | did not find any defunct processes belonging to 32259
[2025-12-01 18:23:20] 2025-12-01 17:22:42,786 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 18:23:20] 2025-12-01 17:22:42,786 | INFO     | ready for new job
[2025-12-01 18:23:20] 2025-12-01 17:22:42,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 18:23:20] 2025-12-01 17:22:42,792 | INFO     | ***************************************
[2025-12-01 18:23:20] 2025-12-01 17:22:42,792 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 18:23:20] 2025-12-01 17:22:42,792 | INFO     | ***************************************
[2025-12-01 18:23:20] 2025-12-01 17:22:42,792 | INFO     | 
[2025-12-01 18:23:20] 2025-12-01 17:22:42,793 | INFO     | pilot is running in a VM
[2025-12-01 18:23:20] 2025-12-01 17:22:42,793 | INFO     | architecture information:
[2025-12-01 18:23:20] 2025-12-01 17:22:42,797 | INFO     | executing command: cat /etc/os-release
[2025-12-01 18:23:20] 2025-12-01 17:22:42,937 | INFO     | cat /etc/os-release:
[2025-12-01 18:23:20] NAME="CentOS Linux"
[2025-12-01 18:23:20] VERSION="7 (Core)"
[2025-12-01 18:23:20] ID="centos"
[2025-12-01 18:23:20] ID_LIKE="rhel fedora"
[2025-12-01 18:23:20] VERSION_ID="7"
[2025-12-01 18:23:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 18:23:20] ANSI_COLOR="0;31"
[2025-12-01 18:23:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 18:23:20] HOME_URL="https://www.centos.org/"
[2025-12-01 18:23:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 18:23:20] 
[2025-12-01 18:23:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 18:23:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 18:23:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 18:23:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 18:23:20] 
[2025-12-01 18:23:20] 2025-12-01 17:22:42,937 | INFO     | ***************************************
[2025-12-01 18:23:20] 2025-12-01 17:22:43,441 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-01 18:23:20] 2025-12-01 17:22:43,582 | INFO     | sufficient remaining disk space (487887732736 B)
[2025-12-01 18:23:20] 2025-12-01 17:22:43,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 18:23:20] 2025-12-01 17:22:43,583 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 18:23:20] 2025-12-01 17:22:43,583 | INFO     | update_server=False
[2025-12-01 18:23:20] 2025-12-01 17:22:43,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 18:23:20] 2025-12-01 17:22:43,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:23:20] 2025-12-01 17:22:43,585 | INFO     | aborting loop
[2025-12-01 18:23:20] 2025-12-01 17:22:43,671 | INFO     | all job control threads have been joined
[2025-12-01 18:23:20] 2025-12-01 17:22:43,868 | INFO     | all payload control threads have been joined
[2025-12-01 18:23:20] 2025-12-01 17:22:44,507 | INFO     | all data control threads have been joined
[2025-12-01 18:23:20] 2025-12-01 17:22:44,589 | INFO     | [job] retrieve thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:44,591 | INFO     | [job] job monitor thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:44,609 | INFO     | [payload] failed_post thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:44,677 | INFO     | [job] control thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:44,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 18:23:20] 2025-12-01 17:22:44,874 | INFO     | [payload] control thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,232 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,409 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,455 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:23:20] 2025-12-01 17:22:45,513 | INFO     | [data] control thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,579 | INFO     | [job] validate thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,594 | INFO     | [data] copytool_in thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,594 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:45,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 18:23:20] 2025-12-01 17:22:46,101 | INFO     | [payload] validate_post thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:46,484 | INFO     | [job] queue monitor thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:46,873 | INFO     | [data] copytool_out thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:22:49,745 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 18:23:20] 2025-12-01 17:23:08,418 | INFO     | [monitor] cgroup control has ended
[2025-12-01 18:23:20] 2025-12-01 17:23:10,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269992367936)>', '<ExcThread(monitor, started 140269253023488)>']
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | INFO     | PID=25636 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | INFO     | .. there are 9 such processes running
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 18:23:20] 2025-12-01 17:23:13,045 | INFO     | [monitor] control thread has ended
[2025-12-01 18:23:20] 2025-12-01 17:23:15,462 | INFO     | all workflow threads have been joined
[2025-12-01 18:23:20] 2025-12-01 17:23:15,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 18:23:20] 2025-12-01 17:23:15,462 | INFO     | traces error code: 0
[2025-12-01 18:23:20] 2025-12-01 17:23:15,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 18:23:20] 2025-12-01 17:23:15,798 [wrapper] ==== pilot stdout END ====
[2025-12-01 18:23:20] 2025-12-01 17:23:15,883 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 18:23:20] 2025-12-01 17:23:15,969 [wrapper] pilotpid: 25636
[2025-12-01 18:23:20] 2025-12-01 17:23:16,023 [wrapper] Pilot exit status: 0
[2025-12-01 18:23:20] 2025-12-01 17:23:16,371 [wrapper] pandaids: 6891592559
[2025-12-01 18:23:20] 2025-12-01 17:23:17,437 [wrapper] cleanup supervisor_pilot 20271 25637
[2025-12-01 18:23:20] 2025-12-01 17:23:17,486 [wrapper] Test setup, not cleaning
[2025-12-01 18:23:20] 2025-12-01 17:23:17,581 [wrapper] apfmon messages muted
[2025-12-01 18:23:20] 2025-12-01 17:23:17,642 [wrapper] ==== wrapper stdout END ====
[2025-12-01 18:23:20] 2025-12-01 17:23:17,713 [wrapper] ==== wrapper stderr END ====
[2025-12-01 18:23:20]  *** Error codes and diagnostics ***
[2025-12-01 18:23:20]     "exeErrorCode": 0,
[2025-12-01 18:23:20]     "exeErrorDiag": "",
[2025-12-01 18:23:20]     "pilotErrorCode": 0,
[2025-12-01 18:23:20]     "pilotErrorDiag": "",
[2025-12-01 18:23:20]  *** Listing of results directory ***
[2025-12-01 18:23:20] total 1304076
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:25 queuedata.json
[2025-12-01 18:23:20] -rwx------. 1 boinc boinc     36292 Nov 18 19:26 runpilot2-wrapper.sh
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc       100 Nov 30 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 18:23:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 19:03 run_atlas
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc       105 Nov 30 19:03 job.xml
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc      6392 Nov 30 19:03 init_data.xml
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc 405263737 Nov 30 19:03 EVNT.47493065._000651.pool.root.1
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc     15120 Nov 30 19:03 start_atlas.sh
[2025-12-01 18:23:20] drwxrwx--x. 2 boinc boinc        68 Nov 30 19:03 shared
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc    590089 Nov 30 19:03 input.tar.gz
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc         0 Nov 30 19:03 boinc_lockfile
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc      2773 Nov 30 19:03 pandaJob.out
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc    993063 Nov 30 19:06 agis_schedconf.cvmfs.json
[2025-12-01 18:23:20] drwx------. 5 boinc boinc      4096 Nov 30 19:06 pilot3
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc       533 Dec  1 17:59 boinc_task_state.xml
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc 899125395 Dec  1 18:19 HITS.47493068._006007.pool.root.1
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc      1029 Dec  1 18:20 memory_monitor_summary.json
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc   1516240 Dec  1 18:21 agis_ddmendpoints.agis.ALL.json
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc   2442690 Dec  1 18:21 log.47493068._006007.job.log.tgz.1
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc        95 Dec  1 18:22 pilot_heartbeat.json
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc      8628 Dec  1 18:22 heartbeat.json
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc      8192 Dec  1 18:22 boinc_mmap_file
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc        29 Dec  1 18:22 wrapper_checkpoint.txt
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc      4884 Dec  1 18:23 pilotlog.txt
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc  11093781 Dec  1 18:23 log.47493068._006007.job.log.1
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc       353 Dec  1 18:23 output.list
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc       620 Dec  1 18:23 runtime_log
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc  13557760 Dec  1 18:23 result.tar.gz
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc      8703 Dec  1 18:23 runtime_log.err
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc       662 Dec  1 18:23 PONLDmHaff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaFGKDmheNHTo.diag
[2025-12-01 18:23:20] -rw-r--r--. 1 boinc boinc     21483 Dec  1 18:23 stderr.txt
[2025-12-01 18:23:20] HITS file was successfully produced:
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc 899125395 Dec  1 18:19 shared/HITS.pool.root.1
[2025-12-01 18:23:20]  *** Contents of shared directory: ***
[2025-12-01 18:23:20] total 1287660
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc 405263737 Nov 30 19:03 ATLAS.root_0
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc     15120 Nov 30 19:03 start_atlas.sh
[2025-12-01 18:23:20] -rw-r--r--. 2 boinc boinc    590089 Nov 30 19:03 input.tar.gz
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc 899125395 Dec  1 18:19 HITS.pool.root.1
[2025-12-01 18:23:20] -rw-------. 1 boinc boinc  13557760 Dec  1 18:23 result.tar.gz
18:23:21 (21864): run_atlas exited; CPU time 313406.553062
18:23:21 (21864): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN