Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:51:37 (4138): wrapper (7.7.26015): starting
06:51:37 (4138): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 06:51:37] Arguments: --nthreads 8
[2025-11-30 06:51:37] Threads: 8
[2025-11-30 06:51:37] Checking for CVMFS
[2025-11-30 06:51:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 06:51:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 06:51:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 06:51:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 06:51:40] 2.11.2.0 29208 227713 135384 153470 0 85 23047857 25165824 2504 130560 8 98591556 99.900 40566307 2333 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 06:51:40] CVMFS is ok
[2025-11-30 06:51:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 06:51:40] Checking for apptainer binary...
[2025-11-30 06:51:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 06:51:40] Running /usr/bin/apptainer --version
[2025-11-30 06:51:40] apptainer version 1.3.2-1.el7
[2025-11-30 06:51:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 06:51:54] cg-vwn345.simple-grid.lan
[2025-11-30 06:51:54] apptainer works
[2025-11-30 06:51:54] Set ATHENA_PROC_NUMBER=8
[2025-11-30 06:51:54] Set ATHENA_CORE_NUMBER=8
[2025-11-30 06:51:54] Starting ATLAS job with PandaID=6898413024
[2025-11-30 06:51:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 06:33:14]  *** The last 200 lines of the pilot log: ***
[2025-12-01 06:33:14] 2025-12-01 05:32:15,777 | INFO     | monitor loop #5705: job 0:6898413024 is in state 'finished'
[2025-12-01 06:33:14] 2025-12-01 05:32:15,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 06:33:14] 2025-12-01 05:32:16,783 | INFO     | time since job start (84996s) is within the limit (172800.0s)
[2025-12-01 06:33:14] 2025-12-01 05:32:18,283 | INFO     | monitor loop #5706: job 0:6898413024 is in state 'finished'
[2025-12-01 06:33:14] 2025-12-01 05:32:18,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 06:33:14] 2025-12-01 05:32:18,790 | INFO     | time since job start (84998s) is within the limit (172800.0s)
[2025-12-01 06:33:14] 2025-12-01 05:32:20,787 | INFO     | monitor loop #5707: job 0:6898413024 is in state 'finished'
[2025-12-01 06:33:14] 2025-12-01 05:32:20,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 06:33:14] 2025-12-01 05:32:20,805 | INFO     | time since job start (85000s) is within the limit (172800.0s)
[2025-12-01 06:33:14] 2025-12-01 05:32:21,823 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 06:33:14] 2025-12-01 05:32:21,824 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 06:33:14] 2025-12-01 05:32:21,826 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6898413024/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 06:33:14] 2025-12-01 05:32:21,827 | INFO     | extracted standard info from prmon json
[2025-12-01 06:33:14] 2025-12-01 05:32:21,827 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 06:33:14] 2025-12-01 05:32:21,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 06:33:14] 2025-12-01 05:32:21,855 | INFO     | fitting pss+swap vs Time
[2025-12-01 06:33:14] 2025-12-01 05:32:21,857 | INFO     | sum of square deviations: 823808784326.6454
[2025-12-01 06:33:14] 2025-12-01 05:32:21,926 | INFO     | sum of deviations: 3635050906549.8267
[2025-12-01 06:33:14] 2025-12-01 05:32:21,926 | INFO     | mean x: 1764524838.0981948
[2025-12-01 06:33:14] 2025-12-01 05:32:21,926 | INFO     | mean y: 2845113.2880866425
[2025-12-01 06:33:14] 2025-12-01 05:32:21,926 | INFO     | intersect: -7783109266.406028
[2025-12-01 06:33:14] 2025-12-01 05:32:21,928 | INFO     | chi2: 17.217122447004897
[2025-12-01 06:33:14] 2025-12-01 05:32:21,930 | INFO     | sum of square deviations: 814919276890.5927
[2025-12-01 06:33:14] 2025-12-01 05:32:21,985 | INFO     | sum of deviations: 4106928614166.218
[2025-12-01 06:33:14] 2025-12-01 05:32:21,986 | INFO     | mean x: 1764524685.6021738
[2025-12-01 06:33:14] 2025-12-01 05:32:21,986 | INFO     | mean y: 2853208.1260869564
[2025-12-01 06:33:14] 2025-12-01 05:32:21,986 | INFO     | intersect: -8889778402.397387
[2025-12-01 06:33:14] 2025-12-01 05:32:21,988 | INFO     | chi2: 13.889820145482835
[2025-12-01 06:33:14] 2025-12-01 05:32:21,988 | INFO     | current chi2=13.889820145482835 (change=19.325542417228274 %)
[2025-12-01 06:33:14] 2025-12-01 05:32:21,988 | INFO     | right removable region: 1379
[2025-12-01 06:33:14] 2025-12-01 05:32:21,990 | INFO     | sum of square deviations: 814918349080.5927
[2025-12-01 06:33:14] 2025-12-01 05:32:22,053 | INFO     | sum of deviations: 3060413071599.05
[2025-12-01 06:33:14] 2025-12-01 05:32:22,053 | INFO     | mean x: 1764524990.6021738
[2025-12-01 06:33:14] 2025-12-01 05:32:22,053 | INFO     | mean y: 2854969.45
[2025-12-01 06:33:14] 2025-12-01 05:32:22,054 | INFO     | intersect: -6623790942.370086
[2025-12-01 06:33:14] 2025-12-01 05:32:22,055 | INFO     | chi2: 12.614353530237574
[2025-12-01 06:33:14] 2025-12-01 05:32:22,056 | INFO     | current chi2=12.614353530237574 (change=26.733671267860583 %)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,058 | INFO     | sum of square deviations: 806092101084.4977
[2025-12-01 06:33:14] 2025-12-01 05:32:22,119 | INFO     | sum of deviations: 2580921376052.0806
[2025-12-01 06:33:14] 2025-12-01 05:32:22,119 | INFO     | mean x: 1764525143.1061819
[2025-12-01 06:33:14] 2025-12-01 05:32:22,119 | INFO     | mean y: 2863253.684363636
[2025-12-01 06:33:14] 2025-12-01 05:32:22,119 | INFO     | intersect: -5646740128.233311
[2025-12-01 06:33:14] 2025-12-01 05:32:22,121 | INFO     | chi2: 9.540433670917144
[2025-12-01 06:33:14] 2025-12-01 05:32:22,121 | INFO     | current chi2=9.540433670917144 (change=24.3684295984888 %)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,122 | INFO     | left removable region: 20
[2025-12-01 06:33:14] 2025-12-01 05:32:22,124 | INFO     | sum of square deviations: 778278517038.549
[2025-12-01 06:33:14] 2025-12-01 05:32:22,179 | INFO     | sum of deviations: 2783093213184.3643
[2025-12-01 06:33:14] 2025-12-01 05:32:22,179 | INFO     | mean x: 1764525265.1133187
[2025-12-01 06:33:14] 2025-12-01 05:32:22,179 | INFO     | mean y: 2879420.322295806
[2025-12-01 06:33:14] 2025-12-01 05:32:22,179 | INFO     | intersect: -6306993179.676477
[2025-12-01 06:33:14] 2025-12-01 05:32:22,181 | INFO     | chi2: 4.609351393993317
[2025-12-01 06:33:14] 2025-12-01 05:32:22,181 | INFO     | current memory leak: 3.58 B/s (using 1359 data points, chi2=4.61)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,182 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | ..............................
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . Timing measurements:
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . get job = 0 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . initial setup = 14 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . payload setup = 139 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . stage-in = 0 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . payload execution = 84597 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,183 | INFO     | . stage-out = 5 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,184 | INFO     | . log creation = 2 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,184 | INFO     | ..............................
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | 
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | job summary report
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | --------------------------------------------------
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | PanDA job id: 6898413024
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | task id: 47556161
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | errors: (none)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,322 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | pilot state: finished 
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | transexitcode: 0
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | exeerrorcode: 0
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | exeerrordiag: 
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | exitcode: 0
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | exitmsg: OK
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | cpuconsumptiontime: 319971 s
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | nevents: 1000
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | neventsw: 0
[2025-12-01 06:33:14] 2025-12-01 05:32:22,323 | INFO     | pid: 14488
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | pgrp: 14488
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | corecount: 8
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | event service: False
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | sizes: {0: 2283488, 1: 2284174, 2: 2284373, 13: 2284373, 24: 2284429, 35: 2284457, 45: 2284613, 56: 2284641, 67: 2284669, 77: 2284697, 88: 2284753, 89: 2285323, 99
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | --------------------------------------------------
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | 
[2025-12-01 06:33:14] 2025-12-01 05:32:22,324 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-12-01 06:33:14] 2025-12-01 05:32:22,508 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,509 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,510 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 06:33:14] 2025-12-01 05:32:22,511 | INFO     | job 6898413024 has completed (purged errors)
[2025-12-01 06:33:14] 2025-12-01 05:32:22,511 | INFO     | overall cleanup function is called
[2025-12-01 06:33:14] 2025-12-01 05:32:23,527 | INFO     | --- collectZombieJob: --- 10, [14488]
[2025-12-01 06:33:14] 2025-12-01 05:32:23,527 | INFO     | zombie collector waiting for pid 14488
[2025-12-01 06:33:14] 2025-12-01 05:32:23,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 06:33:14] 2025-12-01 05:32:23,528 | INFO     | collected zombie processes
[2025-12-01 06:33:14] 2025-12-01 05:32:23,528 | INFO     | will attempt to kill all subprocesses of pid=14488
[2025-12-01 06:33:14] 2025-12-01 05:32:23,630 | INFO     | process IDs to be killed: [14488] (in reverse order)
[2025-12-01 06:33:14] 2025-12-01 05:32:23,826 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 06:33:14] 2025-12-01 05:32:23,826 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 06:33:14] 2025-12-01 05:32:23,829 | INFO     | did not find any defunct processes belonging to 14488
[2025-12-01 06:33:14] 2025-12-01 05:32:23,832 | INFO     | did not find any defunct processes belonging to 14488
[2025-12-01 06:33:14] 2025-12-01 05:32:23,855 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 06:33:14] 2025-12-01 05:32:23,855 | INFO     | ready for new job
[2025-12-01 06:33:14] 2025-12-01 05:32:23,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 06:33:14] 2025-12-01 05:32:23,860 | INFO     | ***************************************
[2025-12-01 06:33:14] 2025-12-01 05:32:23,861 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 06:33:14] 2025-12-01 05:32:23,861 | INFO     | ***************************************
[2025-12-01 06:33:14] 2025-12-01 05:32:23,861 | INFO     | 
[2025-12-01 06:33:14] 2025-12-01 05:32:23,861 | INFO     | pilot is running in a VM
[2025-12-01 06:33:14] 2025-12-01 05:32:23,862 | INFO     | architecture information:
[2025-12-01 06:33:14] 2025-12-01 05:32:23,862 | INFO     | executing command: cat /etc/os-release
[2025-12-01 06:33:14] 2025-12-01 05:32:23,969 | INFO     | cat /etc/os-release:
[2025-12-01 06:33:14] NAME="CentOS Linux"
[2025-12-01 06:33:14] VERSION="7 (Core)"
[2025-12-01 06:33:14] ID="centos"
[2025-12-01 06:33:14] ID_LIKE="rhel fedora"
[2025-12-01 06:33:14] VERSION_ID="7"
[2025-12-01 06:33:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 06:33:14] ANSI_COLOR="0;31"
[2025-12-01 06:33:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 06:33:14] HOME_URL="https://www.centos.org/"
[2025-12-01 06:33:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 06:33:14] 
[2025-12-01 06:33:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 06:33:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 06:33:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 06:33:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 06:33:14] 
[2025-12-01 06:33:14] 2025-12-01 05:32:23,969 | INFO     | ***************************************
[2025-12-01 06:33:14] 2025-12-01 05:32:24,473 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-12-01 06:33:14] 2025-12-01 05:32:24,627 | INFO     | sufficient remaining disk space (488382660608 B)
[2025-12-01 06:33:14] 2025-12-01 05:32:24,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 06:33:14] 2025-12-01 05:32:24,627 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 06:33:14] 2025-12-01 05:32:24,627 | INFO     | update_server=False
[2025-12-01 06:33:14] 2025-12-01 05:32:24,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 06:33:14] 2025-12-01 05:32:24,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:33:14] 2025-12-01 05:32:24,628 | INFO     | aborting loop
[2025-12-01 06:33:14] 2025-12-01 05:32:24,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 06:33:14] 2025-12-01 05:32:24,862 | INFO     | all payload control threads have been joined
[2025-12-01 06:33:14] 2025-12-01 05:32:25,327 | INFO     | all data control threads have been joined
[2025-12-01 06:33:14] 2025-12-01 05:32:25,633 | INFO     | [job] retrieve thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:25,634 | INFO     | [job] job monitor thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:25,838 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:25,867 | INFO     | [payload] control thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,237 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,272 | INFO     | all job control threads have been joined
[2025-12-01 06:33:14] 2025-12-01 05:32:26,333 | INFO     | [data] control thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,638 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,643 | INFO     | [data] copytool_out thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,792 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 06:33:14] 2025-12-01 05:32:26,799 | INFO     | [payload] failed_post thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,882 | INFO     | [data] copytool_in thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:26,916 | INFO     | [job] validate thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:27,088 | INFO     | [payload] validate_post thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:27,278 | INFO     | [job] control thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:27,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:33:14] 2025-12-01 05:32:28,340 | INFO     | [job] queue monitor thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:30,805 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 06:33:14] 2025-12-01 05:32:54,041 | INFO     | PID=7939 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 06:33:14] 2025-12-01 05:32:54,041 | INFO     | .. there are 9 such processes running
[2025-12-01 06:33:14] 2025-12-01 05:32:54,042 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 06:33:14] 2025-12-01 05:32:54,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 06:33:14] 2025-12-01 05:32:54,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 06:33:14] 2025-12-01 05:33:08,149 | INFO     | [monitor] cgroup control has ended
[2025-12-01 06:33:14] 2025-12-01 05:33:08,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603707311936)>', '<ExcThread(monitor, started 140603488716544)>']
[2025-12-01 06:33:14] 2025-12-01 05:33:09,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 06:33:14] 2025-12-01 05:33:09,131 | INFO     | [monitor] control thread has ended
[2025-12-01 06:33:14] 2025-12-01 05:33:13,469 | INFO     | all workflow threads have been joined
[2025-12-01 06:33:14] 2025-12-01 05:33:13,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 06:33:14] 2025-12-01 05:33:13,470 | INFO     | traces error code: 0
[2025-12-01 06:33:14] 2025-12-01 05:33:13,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 06:33:14] 2025-12-01 05:33:13,605 [wrapper] ==== pilot stdout END ====
[2025-12-01 06:33:14] 2025-12-01 05:33:13,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 06:33:14] 2025-12-01 05:33:13,616 [wrapper] pilotpid: 7939
[2025-12-01 06:33:14] 2025-12-01 05:33:13,624 [wrapper] Pilot exit status: 0
[2025-12-01 06:33:14] 2025-12-01 05:33:13,674 [wrapper] pandaids: 6898413024
[2025-12-01 06:33:14] 2025-12-01 05:33:13,725 [wrapper] cleanup supervisor_pilot 20846 7940
[2025-12-01 06:33:14] 2025-12-01 05:33:13,754 [wrapper] Test setup, not cleaning
[2025-12-01 06:33:14] 2025-12-01 05:33:13,772 [wrapper] apfmon messages muted
[2025-12-01 06:33:14] 2025-12-01 05:33:13,818 [wrapper] ==== wrapper stdout END ====
[2025-12-01 06:33:14] 2025-12-01 05:33:13,888 [wrapper] ==== wrapper stderr END ====
[2025-12-01 06:33:14]  *** Error codes and diagnostics ***
[2025-12-01 06:33:14]     "exeErrorCode": 0,
[2025-12-01 06:33:14]     "exeErrorDiag": "",
[2025-12-01 06:33:14]     "pilotErrorCode": 0,
[2025-12-01 06:33:14]     "pilotErrorDiag": "",
[2025-12-01 06:33:14]  *** Listing of results directory ***
[2025-12-01 06:33:14] total 1320764
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-01 06:33:14] -rwx------. 1 boinc boinc     36292 Nov 26 17:38 runpilot2-wrapper.sh
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:41 queuedata.json
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc       100 Nov 30 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 06:33:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 06:51 run_atlas
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc       105 Nov 30 06:51 job.xml
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc 406046546 Nov 30 06:51 EVNT.47483658._002625.pool.root.1
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc     15847 Nov 30 06:51 start_atlas.sh
[2025-12-01 06:33:14] drwxrwx--x. 2 boinc boinc        68 Nov 30 06:51 shared
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc    590113 Nov 30 06:51 input.tar.gz
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      6392 Nov 30 06:51 init_data.xml
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc         0 Nov 30 06:51 boinc_lockfile
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      2787 Nov 30 06:51 pandaJob.out
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc    991116 Nov 30 06:55 agis_schedconf.cvmfs.json
[2025-12-01 06:33:14] drwx------. 5 boinc boinc      4096 Nov 30 06:55 pilot3
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc       533 Dec  1 06:14 boinc_task_state.xml
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc 914878835 Dec  1 06:30 HITS.47556161._006080.pool.root.1
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc      1031 Dec  1 06:30 memory_monitor_summary.json
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc   1516240 Dec  1 06:31 agis_ddmendpoints.agis.ALL.json
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc   2479608 Dec  1 06:31 log.47556161._006080.job.log.tgz.1
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc      8630 Dec  1 06:32 heartbeat.json
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc        95 Dec  1 06:32 pilot_heartbeat.json
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      8192 Dec  1 06:32 boinc_mmap_file
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc        29 Dec  1 06:32 wrapper_checkpoint.txt
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc      4884 Dec  1 06:33 pilotlog.txt
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc  11348066 Dec  1 06:33 log.47556161._006080.job.log.1
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc       353 Dec  1 06:33 output.list
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc       620 Dec  1 06:33 runtime_log
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc  13844480 Dec  1 06:33 result.tar.gz
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc       662 Dec  1 06:33 scLNDmliXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTBKKDmojcjUo.diag
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      8833 Dec  1 06:33 runtime_log.err
[2025-12-01 06:33:14] -rw-r--r--. 1 boinc boinc      1838 Dec  1 06:33 stderr.txt
[2025-12-01 06:33:14] HITS file was successfully produced:
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc 914878835 Dec  1 06:30 shared/HITS.pool.root.1
[2025-12-01 06:33:14]  *** Contents of shared directory: ***
[2025-12-01 06:33:14] total 1304088
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc 406046546 Nov 30 06:51 ATLAS.root_0
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc     15847 Nov 30 06:51 start_atlas.sh
[2025-12-01 06:33:14] -rw-r--r--. 2 boinc boinc    590113 Nov 30 06:51 input.tar.gz
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc 914878835 Dec  1 06:30 HITS.pool.root.1
[2025-12-01 06:33:14] -rw-------. 1 boinc boinc  13844480 Dec  1 06:33 result.tar.gz
06:33:15 (4138): run_atlas exited; CPU time 320591.274183
06:33:15 (4138): called boinc_finish(0)

</stderr_txt>
]]>

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