Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:09:19 (2456948): wrapper (7.7.26015): starting
05:09:19 (2456948): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 05:09:19] Arguments: --nthreads 3
[2025-12-02 05:09:19] Threads: 3
[2025-12-02 05:09:19] Checking for CVMFS
[2025-12-02 05:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:09:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:09:19] 2.9.2.0 2389932 487 53120 153542 1 81 35109074 36864001 0 130560 0 182270 99.986 14499 12991 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 05:09:19] CVMFS is ok
[2025-12-02 05:09:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 05:09:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 05:09:19] Further information can be found at the LHC@home message board.
[2025-12-02 05:09:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:09:19] Checking for apptainer binary...
[2025-12-02 05:09:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:09:19] Running /usr/bin/apptainer --version
[2025-12-02 05:09:19] apptainer version 1.4.1-1.1
[2025-12-02 05:09:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:09:19] thA385
[2025-12-02 05:09:19] apptainer works
[2025-12-02 05:09:19] Set ATHENA_PROC_NUMBER=3
[2025-12-02 05:09:19] Set ATHENA_CORE_NUMBER=3
[2025-12-02 05:09:19] Starting ATLAS job with PandaID=6898378637
[2025-12-02 05:09:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:59:40 (2501842): wrapper (7.7.26015): starting
09:59:40 (2501842): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 09:59:40] Arguments: --nthreads 3
[2025-12-02 09:59:40] Threads: 3
[2025-12-02 09:59:40] This job has been restarted, cleaning up previous attempt
[2025-12-02 09:59:40] Checking for CVMFS
[2025-12-02 09:59:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:59:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:59:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:59:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:59:42] 2.9.2.0 2501968 0 30020 153549 4 1 35170275 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 09:59:42] CVMFS is ok
[2025-12-02 09:59:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:59:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:59:42] Further information can be found at the LHC@home message board.
[2025-12-02 09:59:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:59:42] Checking for apptainer binary...
[2025-12-02 09:59:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:59:42] Running /usr/bin/apptainer --version
[2025-12-02 09:59:42] apptainer version 1.4.1-1.1
[2025-12-02 09:59:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:59:42] thA385
[2025-12-02 09:59:42] apptainer works
[2025-12-02 09:59:42] Set ATHENA_PROC_NUMBER=3
[2025-12-02 09:59:42] Set ATHENA_CORE_NUMBER=3
[2025-12-02 09:59:42] Starting ATLAS job with PandaID=6898378637
[2025-12-02 09:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:08:34]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:08:34] 2025-12-02 17:08:04,337 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:08:34] 2025-12-02 17:08:04,346 | INFO     | cat /etc/os-release:
[2025-12-02 18:08:34] NAME="CentOS Linux"
[2025-12-02 18:08:34] VERSION="7 (Core)"
[2025-12-02 18:08:34] ID="centos"
[2025-12-02 18:08:34] ID_LIKE="rhel fedora"
[2025-12-02 18:08:34] VERSION_ID="7"
[2025-12-02 18:08:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:08:34] ANSI_COLOR="0;31"
[2025-12-02 18:08:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:08:34] HOME_URL="https://www.centos.org/"
[2025-12-02 18:08:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:08:34] 
[2025-12-02 18:08:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:08:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:08:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:08:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:08:34] 
[2025-12-02 18:08:34] 2025-12-02 17:08:04,346 | INFO     | ***************************************
[2025-12-02 18:08:34] 2025-12-02 17:08:04,849 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-02 18:08:34] 2025-12-02 17:08:04,861 | INFO     | sufficient remaining disk space (366404960256 B)
[2025-12-02 18:08:34] 2025-12-02 17:08:04,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:08:34] 2025-12-02 17:08:04,861 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:08:34] 2025-12-02 17:08:04,861 | INFO     | update_server=False
[2025-12-02 18:08:34] 2025-12-02 17:08:04,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:08:34] 2025-12-02 17:08:04,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:08:34] 2025-12-02 17:08:04,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:08:34] 2025-12-02 17:08:04,862 | INFO     | aborting loop
[2025-12-02 18:08:34] 2025-12-02 17:08:04,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:08:34] 2025-12-02 17:08:05,047 | INFO     | all job control threads have been joined
[2025-12-02 18:08:34] 2025-12-02 17:08:05,363 | INFO     | all data control threads have been joined
[2025-12-02 18:08:34] 2025-12-02 17:08:05,867 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:05,867 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:05,868 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,001 | INFO     | all payload control threads have been joined
[2025-12-02 18:08:34] 2025-12-02 17:08:06,053 | INFO     | [job] control thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,192 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:08:34] 2025-12-02 17:08:06,369 | INFO     | [data] control thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,515 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,536 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,732 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,876 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,913 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:06,946 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:07,007 | INFO     | [payload] control thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:07,049 | INFO     | [job] validate thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:10,349 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:15,334 | INFO     | job.realtimelogging is not enabled
[2025-12-02 18:08:34] 2025-12-02 17:08:16,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:08:34] 2025-12-02 17:08:26,445 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:08:34] 2025-12-02 17:08:27,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854486718272)>', '<ExcThread(monitor, started 139853689759488)>']
[2025-12-02 18:08:34] 2025-12-02 17:08:32,188 | INFO     | all workflow threads have been joined
[2025-12-02 18:08:34] 2025-12-02 17:08:32,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:08:34] 2025-12-02 17:08:32,188 | INFO     | traces error code: 0
[2025-12-02 18:08:34] 2025-12-02 17:08:32,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:08:34] 2025-12-02 17:08:34,763 | INFO     | PID=2506053 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 18:08:34] 2025-12-02 17:08:34,764 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:08:34] 2025-12-02 17:08:34,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:08:34] 2025-12-02 17:08:34,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:08:34] 2025-12-02 17:08:34,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:08:34] 2025-12-02 17:08:34,764 | INFO     | [monitor] control thread has ended
[2025-12-02 18:08:34] 2025-12-02 17:08:34,810 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:08:34] 2025-12-02 17:08:34,813 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:08:34] 2025-12-02 17:08:34,816 [wrapper] pilotpid: 2506053
[2025-12-02 18:08:34] 2025-12-02 17:08:34,818 [wrapper] Pilot exit status: 0
[2025-12-02 18:08:34] 2025-12-02 17:08:34,826 [wrapper] pandaids: 6898378637 6898378637
[2025-12-02 18:08:34] 2025-12-02 17:08:34,843 [wrapper] cleanup supervisor_pilot 2563433 2506054
[2025-12-02 18:08:34] 2025-12-02 17:08:34,846 [wrapper] Test setup, not cleaning
[2025-12-02 18:08:34] 2025-12-02 17:08:34,848 [wrapper] apfmon messages muted
[2025-12-02 18:08:34] 2025-12-02 17:08:34,851 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:08:34] 2025-12-02 17:08:34,853 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:08:34]  *** Error codes and diagnostics ***
[2025-12-02 18:08:34]     "exeErrorCode": 0,
[2025-12-02 18:08:34]     "exeErrorDiag": "",
[2025-12-02 18:08:34]     "pilotErrorCode": 0,
[2025-12-02 18:08:34]     "pilotErrorDiag": "",
[2025-12-02 18:08:34]  *** Listing of results directory ***
[2025-12-02 18:08:34] total 1731012
[2025-12-02 18:08:34] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 18:08:34] -rwx------ 1 boinc boinc     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:37 queuedata.json
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc       100 Dec  2 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:08:34] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 05:09 run_atlas
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc       105 Dec  2 05:09 job.xml
[2025-12-02 18:08:34] -rw-r--r-- 3 boinc boinc 410475572 Dec  2 05:09 EVNT.47483658._003211.pool.root.1
[2025-12-02 18:08:34] -rw-r--r-- 3 boinc boinc 410475572 Dec  2 05:09 ATLAS.root_0
[2025-12-02 18:08:34] -rw-r--r-- 2 boinc boinc    590100 Dec  2 05:09 input.tar.gz
[2025-12-02 18:08:34] -rw-r--r-- 2 boinc boinc     15847 Dec  2 05:09 start_atlas.sh
[2025-12-02 18:08:34] drwxrwx--x 2 boinc boinc      4096 Dec  2 05:09 shared
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc         0 Dec  2 05:09 boinc_setup_complete
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc         0 Dec  2 05:09 boinc_lockfile
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc      6455 Dec  2 09:59 init_data.xml
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc      2787 Dec  2 09:59 pandaJob.out
[2025-12-02 18:08:34] -rw------- 1 boinc boinc    990249 Dec  2 09:59 agis_schedconf.cvmfs.json
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc       532 Dec  2 18:04 boinc_task_state.xml
[2025-12-02 18:08:34] -rw------- 1 boinc boinc 937103736 Dec  2 18:07 HITS.47556173._001673.pool.root.1
[2025-12-02 18:08:34] -rw------- 1 boinc boinc      1023 Dec  2 18:07 memory_monitor_summary.json
[2025-12-02 18:08:34] -rw------- 1 boinc boinc   1516240 Dec  2 18:07 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:08:34] -rw------- 1 boinc boinc   1176927 Dec  2 18:07 log.47556173._001673.job.log.tgz.1
[2025-12-02 18:08:34] -rw------- 1 boinc boinc      8560 Dec  2 18:08 heartbeat.json
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc        29 Dec  2 18:08 wrapper_checkpoint.txt
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc      8192 Dec  2 18:08 boinc_mmap_file
[2025-12-02 18:08:34] -rw------- 1 boinc boinc       747 Dec  2 18:08 pilotlog.txt
[2025-12-02 18:08:34] -rw------- 1 boinc boinc        96 Dec  2 18:08 pilot_heartbeat.json
[2025-12-02 18:08:34] -rw------- 1 boinc boinc   4122303 Dec  2 18:08 log.47556173._001673.job.log.1
[2025-12-02 18:08:34] -rw------- 1 boinc boinc       353 Dec  2 18:08 output.list
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc       620 Dec  2 18:08 runtime_log
[2025-12-02 18:08:34] -rw------- 1 boinc boinc   5314560 Dec  2 18:08 result.tar.gz
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc      8983 Dec  2 18:08 runtime_log.err
[2025-12-02 18:08:34] -rw------- 1 boinc boinc       790 Dec  2 18:08 gfrKDmNgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK8JKDmdjsNDn.diag
[2025-12-02 18:08:34] -rw-r--r-- 1 boinc boinc     11094 Dec  2 18:08 stderr.txt
[2025-12-02 18:08:34] HITS file was successfully produced:
[2025-12-02 18:08:34] -rw------- 1 boinc boinc 937103736 Dec  2 18:07 shared/HITS.pool.root.1
[2025-12-02 18:08:34]  *** Contents of shared directory: ***
[2025-12-02 18:08:34] total 1321796
[2025-12-02 18:08:34] -rw-r--r-- 3 boinc boinc 410475572 Dec  2 05:09 ATLAS.root_0
[2025-12-02 18:08:34] -rw-r--r-- 2 boinc boinc    590100 Dec  2 05:09 input.tar.gz
[2025-12-02 18:08:34] -rw-r--r-- 2 boinc boinc     15847 Dec  2 05:09 start_atlas.sh
[2025-12-02 18:08:34] -rw------- 1 boinc boinc 937103736 Dec  2 18:07 HITS.pool.root.1
[2025-12-02 18:08:34] -rw------- 1 boinc boinc   5314560 Dec  2 18:08 result.tar.gz
18:08:36 (2501842): run_atlas exited; CPU time 86474.661594
18:08:36 (2501842): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN