Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
08:33:02 (184595): wrapper (7.7.26015): starting
08:33:02 (184595): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 08:33:02] Arguments: --nthreads 10
[2025-12-01 08:33:02] Threads: 10
[2025-12-01 08:33:02] Checking for CVMFS
[2025-12-01 08:33:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 08:33:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 08:33:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 08:33:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 08:33:03] 2.13.3.0 4125 53 56424 153525 2 108 3947970 4096000 8842 130560 0 2996474 99.942 229748 755 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-01 08:33:03] CVMFS is ok
[2025-12-01 08:33:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 08:33:03] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 08:33:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 08:33:03] Further information can be found at the LHC@home message board.
[2025-12-01 08:33:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 08:33:03] Checking for apptainer binary...
[2025-12-01 08:33:03] apptainer is not installed, using version from CVMFS
[2025-12-01 08:33:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 08:33:04] 7950x-linux
[2025-12-01 08:33:04] apptainer works
[2025-12-01 08:33:04] Set ATHENA_PROC_NUMBER=10
[2025-12-01 08:33:04] Set ATHENA_CORE_NUMBER=10
[2025-12-01 08:33:04] Starting ATLAS job with PandaID=6899449069
[2025-12-01 08:33:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc522/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:14:15]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:14:15] 2025-12-02 10:13:09,314 | INFO     | monitor loop #4599: job 0:6899449069 is in state 'finished'
[2025-12-02 02:14:15] 2025-12-02 10:13:09,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,377 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 02:14:15] 2025-12-02 10:13:10,382 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.13334375
[2025-12-02 02:14:15] 2025-12-02 10:13:10,386 | INFO     | using path: /var/lib/multiboinc/boinc522/slots/1/PanDA_Pilot-6899449069/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,387 | INFO     | extracted standard info from prmon json
[2025-12-02 02:14:15] 2025-12-02 10:13:10,387 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:14:15] 2025-12-02 10:13:10,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:14:15] 2025-12-02 10:13:10,394 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:14:15] 2025-12-02 10:13:10,395 | INFO     | sum of square deviations: 350817444680.5
[2025-12-02 02:14:15] 2025-12-02 10:13:10,418 | INFO     | sum of deviations: 2712849727838.0005
[2025-12-02 02:14:15] 2025-12-02 10:13:10,419 | INFO     | mean x: 1764638582.5
[2025-12-02 02:14:15] 2025-12-02 10:13:10,419 | INFO     | mean y: 3146624.289827255
[2025-12-02 02:14:15] 2025-12-02 10:13:10,419 | INFO     | intersect: -13642695025.994713
[2025-12-02 02:14:15] 2025-12-02 10:13:10,419 | INFO     | chi2: 5.040071790229188
[2025-12-02 02:14:15] 2025-12-02 10:13:10,420 | INFO     | sum of square deviations: 345791480678.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,436 | INFO     | sum of deviations: 2982340584494.0005
[2025-12-02 02:14:15] 2025-12-02 10:13:10,436 | INFO     | mean x: 1764638430.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,436 | INFO     | mean y: 3154793.6518804245
[2025-12-02 02:14:15] 2025-12-02 10:13:10,436 | INFO     | intersect: -15216285536.190817
[2025-12-02 02:14:15] 2025-12-02 10:13:10,437 | INFO     | chi2: 3.2024448858712073
[2025-12-02 02:14:15] 2025-12-02 10:13:10,437 | INFO     | current chi2=3.2024448858712073 (change=36.460331932581816 %)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,437 | INFO     | sum of square deviations: 340813750138.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,458 | INFO     | sum of deviations: 2998644764259.501
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | mean x: 1764638277.5
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | mean y: 3155289.4622093025
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | intersect: -15522988621.969389
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | chi2: 3.107962277465793
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | current chi2=3.107962277465793 (change=2.95032738337699 %)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,459 | INFO     | right removable region: 1031
[2025-12-02 02:14:15] 2025-12-02 10:13:10,462 | INFO     | sum of square deviations: 345791480678.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,483 | INFO     | sum of deviations: 2362219079401.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,483 | INFO     | mean x: 1764638735.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,483 | INFO     | mean y: 3157254.224686596
[2025-12-02 02:14:15] 2025-12-02 10:13:10,483 | INFO     | intersect: -12051689440.939287
[2025-12-02 02:14:15] 2025-12-02 10:13:10,484 | INFO     | chi2: 2.410996044523081
[2025-12-02 02:14:15] 2025-12-02 10:13:10,484 | INFO     | current chi2=2.410996044523081 (change=52.16345828253678 %)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,485 | INFO     | sum of square deviations: 340813750138.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,506 | INFO     | sum of deviations: 2250634937462.4995
[2025-12-02 02:14:15] 2025-12-02 10:13:10,506 | INFO     | mean x: 1764638887.5
[2025-12-02 02:14:15] 2025-12-02 10:13:10,506 | INFO     | mean y: 3160672.3536821706
[2025-12-02 02:14:15] 2025-12-02 10:13:10,506 | INFO     | intersect: -11650001591.798868
[2025-12-02 02:14:15] 2025-12-02 10:13:10,507 | INFO     | chi2: 2.2766297309128607
[2025-12-02 02:14:15] 2025-12-02 10:13:10,507 | INFO     | current chi2=2.2766297309128607 (change=5.573062382887461 %)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,507 | INFO     | left removable region: 20
[2025-12-02 02:14:15] 2025-12-02 10:13:10,508 | INFO     | sum of square deviations: 320428742810.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,526 | INFO     | sum of deviations: 2365473128244.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,527 | INFO     | mean x: 1764638857.0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,527 | INFO     | mean y: 3174703.9070227495
[2025-12-02 02:14:15] 2025-12-02 10:13:10,527 | INFO     | intersect: -13023764642.054913
[2025-12-02 02:14:15] 2025-12-02 10:13:10,527 | INFO     | chi2: 0.22514815294793275
[2025-12-02 02:14:15] 2025-12-02 10:13:10,527 | INFO     | current memory leak: 7.38 B/s (using 1011 data points, chi2=0.23)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | could have reported an average CPU frequency of 4000 MHz (39 samples)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | ..............................
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . Timing measurements:
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . get job = 0 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . initial setup = 8 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . payload setup = 6 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . stage-in = 0 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . payload execution = 63548 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . stage-out = 3 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | . log creation = 0 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,528 | INFO     | ..............................
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | 
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | job summary report
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | --------------------------------------------------
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | PanDA job id: 6899449069
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | task id: 47556185
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | errors: (none)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | pilot state: finished 
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | transexitcode: 0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | exeerrorcode: 0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | exeerrordiag: 
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | exitcode: 0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | exitmsg: OK
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | cpuconsumptiontime: 135335 s
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | nevents: 1000
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | neventsw: 0
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | pid: 217684
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | pgrp: 217684
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | corecount: 10
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | event service: False
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | sizes: {0: 2284155, 1: 2284354, 5: 2284616, 12: 2284672, 63558: 2339151, 63559: 2339150, 63564: 2348412, 63570: 2348602}
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | --------------------------------------------------
[2025-12-02 02:14:15] 2025-12-02 10:13:10,612 | INFO     | 
[2025-12-02 02:14:15] 2025-12-02 10:13:10,616 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc522/slots/1
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:14:15] 2025-12-02 10:13:10,639 | INFO     | job 6899449069 has completed (purged errors)
[2025-12-02 02:14:15] 2025-12-02 10:13:10,639 | INFO     | overall cleanup function is called
[2025-12-02 02:14:15] 2025-12-02 10:13:11,670 | INFO     | --- collectZombieJob: --- 10, [217684]
[2025-12-02 02:14:15] 2025-12-02 10:13:11,670 | INFO     | zombie collector waiting for pid 217684
[2025-12-02 02:14:15] 2025-12-02 10:13:11,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:14:15] 2025-12-02 10:13:11,670 | INFO     | collected zombie processes
[2025-12-02 02:14:15] 2025-12-02 10:13:11,670 | INFO     | will attempt to kill all subprocesses of pid=217684
[2025-12-02 02:14:15] 2025-12-02 10:13:12,064 | INFO     | process IDs to be killed: [217684] (in reverse order)
[2025-12-02 02:14:15] 2025-12-02 10:13:12,236 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:14:15] 2025-12-02 10:13:12,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:14:15] 2025-12-02 10:13:12,249 | INFO     | did not find any defunct processes belonging to 217684
[2025-12-02 02:14:15] 2025-12-02 10:13:12,269 | INFO     | did not find any defunct processes belonging to 217684
[2025-12-02 02:14:15] 2025-12-02 10:13:12,272 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:14:15] 2025-12-02 10:13:12,273 | INFO     | ready for new job
[2025-12-02 02:14:15] 2025-12-02 10:13:12,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:14:15] 2025-12-02 10:13:12,287 | INFO     | ***************************************
[2025-12-02 02:14:15] 2025-12-02 10:13:12,287 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:14:15] 2025-12-02 10:13:12,287 | INFO     | ***************************************
[2025-12-02 02:14:15] 2025-12-02 10:13:12,287 | INFO     | 
[2025-12-02 02:14:15] 2025-12-02 10:13:12,289 | INFO     | architecture information:
[2025-12-02 02:14:15] 2025-12-02 10:13:12,293 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:14:15] 2025-12-02 10:13:12,310 | INFO     | cat /etc/os-release:
[2025-12-02 02:14:15] NAME="CentOS Linux"
[2025-12-02 02:14:15] VERSION="7 (Core)"
[2025-12-02 02:14:15] ID="centos"
[2025-12-02 02:14:15] ID_LIKE="rhel fedora"
[2025-12-02 02:14:15] VERSION_ID="7"
[2025-12-02 02:14:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:14:15] ANSI_COLOR="0;31"
[2025-12-02 02:14:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:14:15] HOME_URL="https://www.centos.org/"
[2025-12-02 02:14:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:14:15] 
[2025-12-02 02:14:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:14:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:14:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:14:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:14:15] 
[2025-12-02 02:14:15] 2025-12-02 10:13:12,311 | INFO     | ***************************************
[2025-12-02 02:14:15] 2025-12-02 10:13:12,813 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc522/slots/1
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | INFO     | sufficient remaining disk space (174521843712 B)
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | INFO     | update_server=False
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:14:15] 2025-12-02 10:13:12,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:14:15] 2025-12-02 10:13:12,832 | INFO     | aborting loop
[2025-12-02 02:14:15] 2025-12-02 10:13:12,915 | INFO     | all job control threads have been joined
[2025-12-02 02:14:15] 2025-12-02 10:13:13,318 | INFO     | all data control threads have been joined
[2025-12-02 02:14:15] 2025-12-02 10:13:13,836 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:13,837 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:13,923 | INFO     | [job] control thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,170 | INFO     | all payload control threads have been joined
[2025-12-02 02:14:15] 2025-12-02 10:13:14,284 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,323 | INFO     | [data] control thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,590 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,667 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,732 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,812 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,838 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:14,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:14:15] 2025-12-02 10:13:14,986 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:15,175 | INFO     | [payload] control thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:15,339 | INFO     | [job] validate thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:15,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:14:15] 2025-12-02 10:13:16,627 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:18,919 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:23,510 | INFO     | job.realtimelogging is not enabled
[2025-12-02 02:14:15] 2025-12-02 10:13:24,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:14:15] 2025-12-02 10:13:42,082 | INFO     | PID=196071 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 02:14:15] 2025-12-02 10:13:42,083 | INFO     | .. there are 14 such processes running
[2025-12-02 02:14:15] 2025-12-02 10:13:42,083 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:14:15] 2025-12-02 10:13:42,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:14:15] 2025-12-02 10:13:42,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:14:15] 2025-12-02 10:14:08,900 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:14:15] 2025-12-02 10:14:10,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134368317019968)>', '<ExcThread(monitor, started 134367816955648)>']
[2025-12-02 02:14:15] 2025-12-02 10:14:11,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:14:15] 2025-12-02 10:14:11,230 | INFO     | [monitor] control thread has ended
[2025-12-02 02:14:15] 2025-12-02 10:14:15,520 | INFO     | all workflow threads have been joined
[2025-12-02 02:14:15] 2025-12-02 10:14:15,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:14:15] 2025-12-02 10:14:15,520 | INFO     | traces error code: 0
[2025-12-02 02:14:15] 2025-12-02 10:14:15,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:14:15] 2025-12-02 10:14:15,607 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:14:15] 2025-12-02 10:14:15,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:14:15] 2025-12-02 10:14:15,611 [wrapper] pilotpid: 196071
[2025-12-02 02:14:15] 2025-12-02 10:14:15,612 [wrapper] Pilot exit status: 0
[2025-12-02 02:14:15] 2025-12-02 10:14:15,620 [wrapper] pandaids: 6899449069
[2025-12-02 02:14:15] 2025-12-02 10:14:15,666 [wrapper] cleanup supervisor_pilot 1656887 196072
[2025-12-02 02:14:15] 2025-12-02 10:14:15,669 [wrapper] Test setup, not cleaning
[2025-12-02 02:14:15] 2025-12-02 10:14:15,671 [wrapper] apfmon messages muted
[2025-12-02 02:14:15] 2025-12-02 10:14:15,672 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:14:15] 2025-12-02 10:14:15,675 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:14:15]  *** Error codes and diagnostics ***
[2025-12-02 02:14:15]     "exeErrorCode": 0,
[2025-12-02 02:14:15]     "exeErrorDiag": "",
[2025-12-02 02:14:15]     "pilotErrorCode": 0,
[2025-12-02 02:14:15]     "pilotErrorDiag": "",
[2025-12-02 02:14:15]  *** Listing of results directory ***
[2025-12-02 02:14:15] total 1320048
[2025-12-02 02:14:15] -rw-r--r-- 1 root root    576529 Nov 26 18:19 pilot3.tar.gz
[2025-12-02 02:14:15] -rwx------ 1 4871 1028     36292 Nov 26 18:43 runpilot2-wrapper.sh
[2025-12-02 02:14:15] -rw-r--r-- 1 root root      5112 Nov 26 18:43 queuedata.json
[2025-12-02 02:14:15] -rw-r--r-- 1 root root       100 Dec  1 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:14:15] -rwxr-xr-x 1 root root      7986 Dec  1 08:33 run_atlas
[2025-12-02 02:14:15] -rw-r--r-- 1 root root       105 Dec  1 08:33 job.xml
[2025-12-02 02:14:15] -rw-r--r-- 1 root root      7071 Dec  1 08:33 init_data.xml
[2025-12-02 02:14:15] -rw-r--r-- 2 root root 411317576 Dec  1 08:33 EVNT.47483658._004316.pool.root.1
[2025-12-02 02:14:15] -rw-r--r-- 2 root root     15847 Dec  1 08:33 start_atlas.sh
[2025-12-02 02:14:15] drwxrwx--x 2 root root      4096 Dec  1 08:33 shared
[2025-12-02 02:14:15] -rw-r--r-- 2 root root    590098 Dec  1 08:33 input.tar.gz
[2025-12-02 02:14:15] -rw-r--r-- 1 root root         0 Dec  1 08:33 boinc_lockfile
[2025-12-02 02:14:15] -rw-r--r-- 1 root root      2784 Dec  1 08:33 pandaJob.out
[2025-12-02 02:14:15] -rw------- 1 root root    992142 Dec  1 08:33 agis_schedconf.cvmfs.json
[2025-12-02 02:14:15] drwxr-xr-x 5  320  320      4096 Dec  1 08:33 pilot3
[2025-12-02 02:14:15] -rw-r--r-- 1 root root       533 Dec  2 02:05 boinc_task_state.xml
[2025-12-02 02:14:15] -rw------- 1 root root 913639714 Dec  2 02:12 HITS.47556185._000800.pool.root.1
[2025-12-02 02:14:15] -rw------- 1 root root      1054 Dec  2 02:12 memory_monitor_summary.json
[2025-12-02 02:14:15] -rw------- 1 root root        95 Dec  2 02:12 pilot_heartbeat.json
[2025-12-02 02:14:15] -rw------- 1 root root   1516240 Dec  2 02:13 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:14:15] -rw------- 1 root root   2403041 Dec  2 02:13 log.47556185._000800.job.log.tgz.1
[2025-12-02 02:14:15] -rw------- 1 root root      8597 Dec  2 02:13 heartbeat.json
[2025-12-02 02:14:15] -rw-r--r-- 1 root root      8192 Dec  2 02:14 boinc_mmap_file
[2025-12-02 02:14:15] -rw-r--r-- 1 root root        29 Dec  2 02:14 wrapper_checkpoint.txt
[2025-12-02 02:14:15] -rw------- 1 root root      4910 Dec  2 02:14 pilotlog.txt
[2025-12-02 02:14:15] -rw------- 1 root root   9020964 Dec  2 02:14 log.47556185._000800.job.log.1
[2025-12-02 02:14:15] -rw------- 1 root root       353 Dec  2 02:14 output.list
[2025-12-02 02:14:15] -rw-r--r-- 1 root root       620 Dec  2 02:14 runtime_log
[2025-12-02 02:14:15] -rw------- 1 root root  11448320 Dec  2 02:14 result.tar.gz
[2025-12-02 02:14:15] -rw-r--r-- 1 root root      9021 Dec  2 02:14 runtime_log.err
[2025-12-02 02:14:15] -rw------- 1 root root       663 Dec  2 02:14 6GFNDmt9gi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8VKKDmeMaxUn.diag
[2025-12-02 02:14:15] -rw-r--r-- 1 root root     21376 Dec  2 02:14 stderr.txt
[2025-12-02 02:14:15] HITS file was successfully produced:
[2025-12-02 02:14:15] -rw------- 1 root root 913639714 Dec  2 02:12 shared/HITS.pool.root.1
[2025-12-02 02:14:15]  *** Contents of shared directory: ***
[2025-12-02 02:14:15] total 1305692
[2025-12-02 02:14:15] -rw-r--r-- 2 root root 411317576 Dec  1 08:33 ATLAS.root_0
[2025-12-02 02:14:15] -rw-r--r-- 2 root root     15847 Dec  1 08:33 start_atlas.sh
[2025-12-02 02:14:15] -rw-r--r-- 2 root root    590098 Dec  1 08:33 input.tar.gz
[2025-12-02 02:14:15] -rw------- 1 root root 913639714 Dec  2 02:12 HITS.pool.root.1
[2025-12-02 02:14:15] -rw------- 1 root root  11448320 Dec  2 02:14 result.tar.gz
02:14:17 (184595): run_atlas exited; CPU time 135859.376652
02:14:17 (184595): called boinc_finish(0)

</stderr_txt>
]]>

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