Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:54:13 (2491340): wrapper (7.7.26015): starting
12:54:13 (2491340): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 12:54:13] Arguments: --nthreads 8
[2025-11-28 12:54:13] Threads: 8
[2025-11-28 12:54:13] Checking for CVMFS
[2025-11-28 12:54:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 12:54:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 12:54:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 12:54:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 12:54:14] 2.13.2.0 11666 37610 281664 153414 0 303 29033056 40960001 15709 16776704 0 67589488 99.766 40216034 37296 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 12:54:14] CVMFS is ok
[2025-11-28 12:54:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 12:54:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 12:54:14] Further information can be found at the LHC@home message board.
[2025-11-28 12:54:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 12:54:14] Checking for apptainer binary...
[2025-11-28 12:54:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 12:54:14] Running /usr/bin/apptainer --version
[2025-11-28 12:54:14] apptainer version 1.4.4-1.el9
[2025-11-28 12:54:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 12:54:14] c-211-33-2.aglt2.org
[2025-11-28 12:54:14] apptainer works
[2025-11-28 12:54:14] Set ATHENA_PROC_NUMBER=8
[2025-11-28 12:54:14] Set ATHENA_CORE_NUMBER=8
[2025-11-28 12:54:35] Starting ATLAS job with PandaID=6892540508
[2025-11-28 12:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 04:35:37]  *** The last 200 lines of the pilot log: ***
[2025-11-29 04:35:37] 2025-11-29 09:34:47,593 | INFO     | time since job start (56395s) is within the limit (172800.0s)
[2025-11-29 04:35:37] 2025-11-29 09:34:47,797 | INFO     | monitor loop #3560: job 0:6892540508 is in state 'finished'
[2025-11-29 04:35:37] 2025-11-29 09:34:47,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:35:37] 2025-11-29 09:34:49,601 | INFO     | time since job start (56397s) is within the limit (172800.0s)
[2025-11-29 04:35:37] 2025-11-29 09:34:50,323 | INFO     | monitor loop #3561: job 0:6892540508 is in state 'finished'
[2025-11-29 04:35:37] 2025-11-29 09:34:50,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:35:37] 2025-11-29 09:34:51,633 | INFO     | time since job start (56399s) is within the limit (172800.0s)
[2025-11-29 04:35:37] 2025-11-29 09:34:52,828 | INFO     | monitor loop #3562: job 0:6892540508 is in state 'finished'
[2025-11-29 04:35:37] 2025-11-29 09:34:52,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:35:37] 2025-11-29 09:34:53,644 | INFO     | time since job start (56401s) is within the limit (172800.0s)
[2025-11-29 04:35:37] 2025-11-29 09:34:55,358 | INFO     | monitor loop #3563: job 0:6892540508 is in state 'finished'
[2025-11-29 04:35:37] 2025-11-29 09:34:55,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:35:37] 2025-11-29 09:34:57,219 | INFO     | PID=2501146 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 04:35:37] 2025-11-29 09:34:57,219 | INFO     | .. there are 23 such processes running
[2025-11-29 04:35:37] 2025-11-29 09:34:57,740 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-29 04:35:37] 2025-11-29 09:34:57,864 | INFO     | monitor loop #3564: job 0:6892540508 is in state 'finished'
[2025-11-29 04:35:37] 2025-11-29 09:34:57,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:35:37] 2025-11-29 09:34:57,901 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2590.5781041666664
[2025-11-29 04:35:37] 2025-11-29 09:34:58,103 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6892540508/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,130 | INFO     | extracted standard info from prmon json
[2025-11-29 04:35:37] 2025-11-29 09:34:58,130 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 04:35:37] 2025-11-29 09:34:58,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 04:35:37] 2025-11-29 09:34:58,234 | INFO     | fitting pss+swap vs Time
[2025-11-29 04:35:37] 2025-11-29 09:34:58,236 | INFO     | sum of square deviations: 244656356967.8396
[2025-11-29 04:35:37] 2025-11-29 09:34:58,278 | INFO     | time since job start (56406s) is within the limit (172800.0s)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,316 | INFO     | sum of deviations: 243470527232.20026
[2025-11-29 04:35:37] 2025-11-29 09:34:58,316 | INFO     | mean x: 1764380681.4004328
[2025-11-29 04:35:37] 2025-11-29 09:34:58,316 | INFO     | mean y: 2868789.502164502
[2025-11-29 04:35:37] 2025-11-29 09:34:58,317 | INFO     | intersect: -1752960080.2759476
[2025-11-29 04:35:37] 2025-11-29 09:34:58,350 | INFO     | chi2: 19.075392864989038
[2025-11-29 04:35:37] 2025-11-29 09:34:58,352 | INFO     | sum of square deviations: 240707500270.54828
[2025-11-29 04:35:37] 2025-11-29 09:34:58,509 | INFO     | sum of deviations: 568262463340.9033
[2025-11-29 04:35:37] 2025-11-29 09:34:58,509 | INFO     | mean x: 1764380528.9162133
[2025-11-29 04:35:37] 2025-11-29 09:34:58,510 | INFO     | mean y: 2881326.9597388464
[2025-11-29 04:35:37] 2025-11-29 09:34:58,510 | INFO     | intersect: -4162469667.5282793
[2025-11-29 04:35:37] 2025-11-29 09:34:58,511 | INFO     | chi2: 15.327294782864438
[2025-11-29 04:35:37] 2025-11-29 09:34:58,511 | INFO     | current chi2=15.327294782864438 (change=19.64886442262406 %)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,511 | INFO     | right removable region: 918
[2025-11-29 04:35:37] 2025-11-29 09:34:58,513 | INFO     | sum of square deviations: 240705921595.38007
[2025-11-29 04:35:37] 2025-11-29 09:34:58,649 | INFO     | sum of deviations: -13381538311.8723
[2025-11-29 04:35:37] 2025-11-29 09:34:58,650 | INFO     | mean x: 1764380833.9151251
[2025-11-29 04:35:37] 2025-11-29 09:34:58,650 | INFO     | mean y: 2878692.501632209
[2025-11-29 04:35:37] 2025-11-29 09:34:58,650 | INFO     | intersect: 100965725.71328877
[2025-11-29 04:35:37] 2025-11-29 09:34:58,651 | INFO     | chi2: 16.808288612100867
[2025-11-29 04:35:37] 2025-11-29 09:34:58,651 | INFO     | current chi2=16.808288612100867 (change=11.884967554451851 %)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,651 | INFO     | left removable region: 10
[2025-11-29 04:35:37] 2025-11-29 09:34:58,653 | INFO     | sum of square deviations: 232167438177.78833
[2025-11-29 04:35:37] 2025-11-29 09:34:58,772 | INFO     | sum of deviations: 300531934139.86835
[2025-11-29 04:35:37] 2025-11-29 09:34:58,772 | INFO     | mean x: 1764380803.4405286
[2025-11-29 04:35:37] 2025-11-29 09:34:58,772 | INFO     | mean y: 2896353.2753303964
[2025-11-29 04:35:37] 2025-11-29 09:34:58,772 | INFO     | intersect: -2281027609.443257
[2025-11-29 04:35:37] 2025-11-29 09:34:58,774 | INFO     | chi2: 12.3463141082885
[2025-11-29 04:35:37] 2025-11-29 09:34:58,791 | INFO     | current memory leak: 1.29 B/s (using 908 data points, chi2=12.35)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | could have reported an average CPU frequency of 2614 MHz (34 samples)
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | ..............................
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . Timing measurements:
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . get job = 0 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . initial setup = 2 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . payload setup = 10 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . stage-in = 0 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . payload execution = 56332 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . stage-out = 7 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,793 | INFO     | . log creation = 1 s
[2025-11-29 04:35:37] 2025-11-29 09:34:58,794 | INFO     | ..............................
[2025-11-29 04:35:37] 2025-11-29 09:34:59,347 | INFO     | 
[2025-11-29 04:35:37] 2025-11-29 09:34:59,347 | INFO     | job summary report
[2025-11-29 04:35:37] 2025-11-29 09:34:59,347 | INFO     | --------------------------------------------------
[2025-11-29 04:35:37] 2025-11-29 09:34:59,347 | INFO     | PanDA job id: 6892540508
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | task id: 47493029
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | errors: (none)
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | pilot state: finished 
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | transexitcode: 0
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | exeerrorcode: 0
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | exeerrordiag: 
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | exitcode: 0
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | exitmsg: OK
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | cpuconsumptiontime: 261013 s
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | nevents: 1000
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | neventsw: 0
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | pid: 2508232
[2025-11-29 04:35:37] 2025-11-29 09:34:59,348 | INFO     | pgrp: 2508232
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | corecount: 8
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | event service: False
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | sizes: {0: 2284132, 1: 2284331, 7: 2284593, 11: 2284621, 56346: 2336451, 56347: 2336450, 56355: 2345684, 56389: 2345874}
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | --------------------------------------------------
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | 
[2025-11-29 04:35:37] 2025-11-29 09:34:59,349 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-29 04:35:37] 2025-11-29 09:34:59,415 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 04:35:37] 2025-11-29 09:34:59,417 | INFO     | job 6892540508 has completed (purged errors)
[2025-11-29 04:35:37] 2025-11-29 09:34:59,418 | INFO     | overall cleanup function is called
[2025-11-29 04:35:37] 2025-11-29 09:35:00,440 | INFO     | --- collectZombieJob: --- 10, [2508232]
[2025-11-29 04:35:37] 2025-11-29 09:35:00,440 | INFO     | zombie collector waiting for pid 2508232
[2025-11-29 04:35:37] 2025-11-29 09:35:00,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 04:35:37] 2025-11-29 09:35:00,441 | INFO     | collected zombie processes
[2025-11-29 04:35:37] 2025-11-29 09:35:00,441 | INFO     | will attempt to kill all subprocesses of pid=2508232
[2025-11-29 04:35:37] 2025-11-29 09:35:02,893 | INFO     | process IDs to be killed: [2508232] (in reverse order)
[2025-11-29 04:35:37] 2025-11-29 09:35:03,224 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 04:35:37] 2025-11-29 09:35:03,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 04:35:37] 2025-11-29 09:35:03,267 | INFO     | did not find any defunct processes belonging to 2508232
[2025-11-29 04:35:37] 2025-11-29 09:35:03,298 | INFO     | did not find any defunct processes belonging to 2508232
[2025-11-29 04:35:37] 2025-11-29 09:35:03,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 04:35:37] 2025-11-29 09:35:03,300 | INFO     | ready for new job
[2025-11-29 04:35:37] 2025-11-29 09:35:03,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 04:35:37] 2025-11-29 09:35:03,313 | INFO     | ***************************************
[2025-11-29 04:35:37] 2025-11-29 09:35:03,313 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 04:35:37] 2025-11-29 09:35:03,314 | INFO     | ***************************************
[2025-11-29 04:35:37] 2025-11-29 09:35:03,314 | INFO     | 
[2025-11-29 04:35:37] 2025-11-29 09:35:03,324 | INFO     | architecture information:
[2025-11-29 04:35:37] 2025-11-29 09:35:03,324 | INFO     | executing command: cat /etc/os-release
[2025-11-29 04:35:37] 2025-11-29 09:35:03,381 | INFO     | cat /etc/os-release:
[2025-11-29 04:35:37] NAME="CentOS Linux"
[2025-11-29 04:35:37] VERSION="7 (Core)"
[2025-11-29 04:35:37] ID="centos"
[2025-11-29 04:35:37] ID_LIKE="rhel fedora"
[2025-11-29 04:35:37] VERSION_ID="7"
[2025-11-29 04:35:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 04:35:37] ANSI_COLOR="0;31"
[2025-11-29 04:35:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 04:35:37] HOME_URL="https://www.centos.org/"
[2025-11-29 04:35:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 04:35:37] 
[2025-11-29 04:35:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 04:35:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 04:35:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 04:35:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 04:35:37] 
[2025-11-29 04:35:37] 2025-11-29 09:35:03,382 | INFO     | ***************************************
[2025-11-29 04:35:37] 2025-11-29 09:35:03,886 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-29 04:35:37] 2025-11-29 09:35:03,927 | INFO     | sufficient remaining disk space (113597480960 B)
[2025-11-29 04:35:37] 2025-11-29 09:35:03,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 04:35:37] 2025-11-29 09:35:03,928 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 04:35:37] 2025-11-29 09:35:03,928 | INFO     | update_server=False
[2025-11-29 04:35:37] 2025-11-29 09:35:03,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 04:35:37] 2025-11-29 09:35:03,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 04:35:37] 2025-11-29 09:35:03,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:35:37] 2025-11-29 09:35:03,971 | INFO     | aborting loop
[2025-11-29 04:35:37] 2025-11-29 09:35:04,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:35:37] 2025-11-29 09:35:04,362 | INFO     | all job control threads have been joined
[2025-11-29 04:35:37] 2025-11-29 09:35:04,701 | INFO     | all data control threads have been joined
[2025-11-29 04:35:37] 2025-11-29 09:35:04,730 | INFO     | all payload control threads have been joined
[2025-11-29 04:35:37] 2025-11-29 09:35:04,934 | INFO     | [job] retrieve thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:04,977 | INFO     | [job] job monitor thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,061 | INFO     | [payload] validate_post thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,311 | INFO     | [job] queue monitor thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,368 | INFO     | [job] control thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,707 | INFO     | [data] control thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,736 | INFO     | [payload] control thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,926 | INFO     | [job] validate thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,927 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,928 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,948 | INFO     | [payload] failed_post thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:05,949 | INFO     | [data] copytool_out thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:06,365 | INFO     | [data] copytool_in thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:06,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:07,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 04:35:37] 2025-11-29 09:35:11,321 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 04:35:37] 2025-11-29 09:35:30,173 | INFO     | [monitor] cgroup control has ended
[2025-11-29 04:35:37] 2025-11-29 09:35:31,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140493992920896)>', '<ExcThread(monitor, started 140493136586496)>']
[2025-11-29 04:35:37] 2025-11-29 09:35:32,581 | INFO     | PID=2501146 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 04:35:37] 2025-11-29 09:35:32,581 | INFO     | .. there are 23 such processes running
[2025-11-29 04:35:37] 2025-11-29 09:35:32,582 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 04:35:37] 2025-11-29 09:35:32,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 04:35:37] 2025-11-29 09:35:32,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 04:35:37] 2025-11-29 09:35:32,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 04:35:37] 2025-11-29 09:35:32,583 | INFO     | [monitor] control thread has ended
[2025-11-29 04:35:37] 2025-11-29 09:35:36,208 | INFO     | all workflow threads have been joined
[2025-11-29 04:35:37] 2025-11-29 09:35:36,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 04:35:37] 2025-11-29 09:35:36,209 | INFO     | traces error code: 0
[2025-11-29 04:35:37] 2025-11-29 09:35:36,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 04:35:37] 2025-11-29 09:35:36,626 [wrapper] ==== pilot stdout END ====
[2025-11-29 04:35:37] 2025-11-29 09:35:36,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 04:35:37] 2025-11-29 09:35:36,660 [wrapper] pilotpid: 2501146
[2025-11-29 04:35:37] 2025-11-29 09:35:36,701 [wrapper] Pilot exit status: 0
[2025-11-29 04:35:37] 2025-11-29 09:35:36,797 [wrapper] pandaids: 6892540508
[2025-11-29 04:35:37] 2025-11-29 09:35:37,151 [wrapper] cleanup supervisor_pilot  245159 2501147
[2025-11-29 04:35:37] 2025-11-29 09:35:37,167 [wrapper] Test setup, not cleaning
[2025-11-29 04:35:37] 2025-11-29 09:35:37,191 [wrapper] apfmon messages muted
[2025-11-29 04:35:37] 2025-11-29 09:35:37,207 [wrapper] ==== wrapper stdout END ====
[2025-11-29 04:35:37] 2025-11-29 09:35:37,231 [wrapper] ==== wrapper stderr END ====
[2025-11-29 04:35:37]  *** Error codes and diagnostics ***
[2025-11-29 04:35:37]     "exeErrorCode": 0,
[2025-11-29 04:35:37]     "exeErrorDiag": "",
[2025-11-29 04:35:37]     "pilotErrorCode": 0,
[2025-11-29 04:35:37]     "pilotErrorDiag": "",
[2025-11-29 04:35:37]  *** Listing of results directory ***
[2025-11-29 04:35:37] total 1312676
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:37 pilot3.tar.gz
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:38 queuedata.json
[2025-11-29 04:35:37] -rwx------. 1 boincer umatlas     36292 Nov 19 02:40 runpilot2-wrapper.sh
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas       100 Nov 28 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 04:35:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 12:54 run_atlas
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas       105 Nov 28 12:54 job.xml
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas 408887789 Nov 28 12:54 EVNT.47493027._000240.pool.root.1
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas     15120 Nov 28 12:54 start_atlas.sh
[2025-11-29 04:35:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 12:54 shared
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas    590100 Nov 28 12:54 input.tar.gz
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas         0 Nov 28 12:54 boinc_lockfile
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas      2772 Nov 28 12:54 pandaJob.out
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas    991834 Nov 28 12:54 agis_schedconf.cvmfs.json
[2025-11-29 04:35:37] drwx------. 5 boincer umatlas      4096 Nov 28 12:54 pilot3
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas       532 Nov 29 03:46 boinc_task_state.xml
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas      6882 Nov 29 04:29 init_data.xml
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas 912443629 Nov 29 04:32 HITS.47493029._002358.pool.root.1
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas      1058 Nov 29 04:34 memory_monitor_summary.json
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas   1516240 Nov 29 04:34 agis_ddmendpoints.agis.ALL.json
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas   2099081 Nov 29 04:34 log.47493029._002358.job.log.tgz.1
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas      8621 Nov 29 04:34 heartbeat.json
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas        95 Nov 29 04:35 pilot_heartbeat.json
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas      4825 Nov 29 04:35 pilotlog.txt
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 04:35 boinc_mmap_file
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas        29 Nov 29 04:35 wrapper_checkpoint.txt
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas   7366011 Nov 29 04:35 log.47493029._002358.job.log.1
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas       353 Nov 29 04:35 output.list
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas       620 Nov 29 04:35 runtime_log
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas   9482240 Nov 29 04:35 result.tar.gz
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas      8714 Nov 29 04:35 runtime_log.err
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas       662 Nov 29 04:35 8JgNDm2yrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyvGKDmwUckmm.diag
[2025-11-29 04:35:37] -rw-r--r--. 1 boincer umatlas     21859 Nov 29 04:35 stderr.txt
[2025-11-29 04:35:37] HITS file was successfully produced:
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas 912443629 Nov 29 04:32 shared/HITS.pool.root.1
[2025-11-29 04:35:37]  *** Contents of shared directory: ***
[2025-11-29 04:35:37] total 1300232
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas 408887789 Nov 28 12:54 ATLAS.root_0
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas     15120 Nov 28 12:54 start_atlas.sh
[2025-11-29 04:35:37] -rw-r--r--. 2 boincer umatlas    590100 Nov 28 12:54 input.tar.gz
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas 912443629 Nov 29 04:32 HITS.pool.root.1
[2025-11-29 04:35:37] -rw-------. 1 boincer umatlas   9482240 Nov 29 04:35 result.tar.gz
04:35:39 (2491340): run_atlas exited; CPU time 262800.512948
04:35:39 (2491340): called boinc_finish(0)

</stderr_txt>
]]>

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