Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:40 (589437): wrapper (7.7.26015): starting
03:57:40 (589437): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 03:57:40] Arguments: --nthreads 8
[2025-11-29 03:57:40] Threads: 8
[2025-11-29 03:57:40] Checking for CVMFS
[2025-11-29 03:57:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 03:57:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 03:57:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 03:57:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 03:57:42] 2.13.2.0 5795 37955 183456 153436 0 89 32177967 39288833 6986 16776704 0 28653713 99.556 31103924 37175 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 03:57:42] CVMFS is ok
[2025-11-29 03:57:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 03:57:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 03:57:42] Further information can be found at the LHC@home message board.
[2025-11-29 03:57:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 03:57:42] Checking for apptainer binary...
[2025-11-29 03:57:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 03:57:42] Running /usr/bin/apptainer --version
[2025-11-29 03:57:42] apptainer version 1.4.4-1.el9
[2025-11-29 03:57:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 03:57:43] c-210-27.aglt2.org
[2025-11-29 03:57:43] apptainer works
[2025-11-29 03:57:43] Set ATHENA_PROC_NUMBER=8
[2025-11-29 03:57:43] Set ATHENA_CORE_NUMBER=8
[2025-11-29 03:57:43] Starting ATLAS job with PandaID=6898487634
[2025-11-29 03:57:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 12:56:31]  *** The last 200 lines of the pilot log: ***
[2025-11-30 12:56:31] 2025-11-30 17:55:29,176 | INFO     | monitor loop #7367: job 0:6898487634 is in state 'finished'
[2025-11-30 12:56:31] 2025-11-30 17:55:29,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 12:56:31] 2025-11-30 17:55:29,550 | INFO     | time since job start (118607s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:31,557 | INFO     | time since job start (118609s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:31,700 | INFO     | monitor loop #7368: job 0:6898487634 is in state 'finished'
[2025-11-30 12:56:31] 2025-11-30 17:55:31,700 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 12:56:31] 2025-11-30 17:55:33,568 | INFO     | time since job start (118611s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:34,205 | INFO     | monitor loop #7369: job 0:6898487634 is in state 'finished'
[2025-11-30 12:56:31] 2025-11-30 17:55:34,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 12:56:31] 2025-11-30 17:55:35,575 | INFO     | time since job start (118613s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:36,710 | INFO     | monitor loop #7370: job 0:6898487634 is in state 'finished'
[2025-11-30 12:56:31] 2025-11-30 17:55:36,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 12:56:31] 2025-11-30 17:55:37,582 | INFO     | time since job start (118615s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:39,261 | INFO     | monitor loop #7371: job 0:6898487634 is in state 'finished'
[2025-11-30 12:56:31] 2025-11-30 17:55:39,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 12:56:31] 2025-11-30 17:55:39,589 | INFO     | time since job start (118617s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:40,556 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 12:56:31] 2025-11-30 17:55:40,573 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1605500000005
[2025-11-30 12:56:31] 2025-11-30 17:55:40,589 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898487634/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 12:56:31] 2025-11-30 17:55:40,590 | INFO     | extracted standard info from prmon json
[2025-11-30 12:56:31] 2025-11-30 17:55:40,590 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 12:56:31] 2025-11-30 17:55:40,590 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 12:56:31] 2025-11-30 17:55:40,665 | INFO     | fitting pss+swap vs Time
[2025-11-30 12:56:31] 2025-11-30 17:55:40,668 | INFO     | sum of square deviations: 2271805185901.4526
[2025-11-30 12:56:31] 2025-11-30 17:55:40,882 | INFO     | sum of deviations: 5124631741057.349
[2025-11-30 12:56:31] 2025-11-30 17:55:40,883 | INFO     | mean x: 1764466039.9572606
[2025-11-30 12:56:31] 2025-11-30 17:55:40,883 | INFO     | mean y: 2990757.365602472
[2025-11-30 12:56:31] 2025-11-30 17:55:40,883 | INFO     | intersect: -3977209098.8975043
[2025-11-30 12:56:31] 2025-11-30 17:55:40,890 | INFO     | chi2: 15.246828700606484
[2025-11-30 12:56:31] 2025-11-30 17:55:40,892 | INFO     | sum of square deviations: 2254313764485.4014
[2025-11-30 12:56:31] 2025-11-30 17:55:41,053 | INFO     | sum of deviations: 5780535891680.321
[2025-11-30 12:56:31] 2025-11-30 17:55:41,053 | INFO     | mean x: 1764465887.4790914
[2025-11-30 12:56:31] 2025-11-30 17:55:41,053 | INFO     | mean y: 2996474.3908105316
[2025-11-30 12:56:31] 2025-11-30 17:55:41,053 | INFO     | intersect: -4521466159.384013
[2025-11-30 12:56:31] 2025-11-30 17:55:41,060 | INFO     | chi2: 12.26087542999012
[2025-11-30 12:56:31] 2025-11-30 17:55:41,060 | INFO     | current chi2=12.26087542999012 (change=19.584094038503817 %)
[2025-11-30 12:56:31] 2025-11-30 17:55:41,060 | INFO     | right removable region: 1936
[2025-11-30 12:56:31] 2025-11-30 17:55:41,063 | INFO     | sum of square deviations: 2254303745845.4043
[2025-11-30 12:56:31] 2025-11-30 17:55:41,249 | INFO     | sum of deviations: 4416680744053.464
[2025-11-30 12:56:31] 2025-11-30 17:55:41,250 | INFO     | mean x: 1764466192.4790914
[2025-11-30 12:56:31] 2025-11-30 17:55:41,250 | INFO     | mean y: 2996925.579246257
[2025-11-30 12:56:31] 2025-11-30 17:55:41,250 | INFO     | intersect: -3453983470.3492494
[2025-11-30 12:56:31] 2025-11-30 17:55:41,257 | INFO     | chi2: 12.054297710473488
[2025-11-30 12:56:31] 2025-11-30 17:55:41,257 | INFO     | current chi2=12.054297710473488 (change=20.938983790156993 %)
[2025-11-30 12:56:31] 2025-11-30 17:55:41,257 | INFO     | left removable region: 10
[2025-11-30 12:56:31] 2025-11-30 17:55:41,264 | INFO     | sum of square deviations: 2216129994566.803
[2025-11-30 12:56:31] 2025-11-30 17:55:41,657 | INFO     | sum of deviations: 4913183326015.54
[2025-11-30 12:56:31] 2025-11-30 17:55:41,658 | INFO     | mean x: 1764466162.0249221
[2025-11-30 12:56:31] 2025-11-30 17:55:41,658 | INFO     | mean y: 3006256.9262720663
[2025-11-30 12:56:31] 2025-11-30 17:55:41,658 | INFO     | intersect: -3908833638.6724873
[2025-11-30 12:56:31] 2025-11-30 17:55:41,664 | INFO     | chi2: 7.990766416412513
[2025-11-30 12:56:31] 2025-11-30 17:55:41,665 | INFO     | current memory leak: 2.22 B/s (using 1926 data points, chi2=7.99)
[2025-11-30 12:56:31] 2025-11-30 17:55:41,666 | INFO     | could have reported an average CPU frequency of 2599 MHz (68 samples)
[2025-11-30 12:56:31] 2025-11-30 17:55:41,669 | INFO     | ..............................
[2025-11-30 12:56:31] 2025-11-30 17:55:41,669 | INFO     | . Timing measurements:
[2025-11-30 12:56:31] 2025-11-30 17:55:41,669 | INFO     | . get job = 0 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,669 | INFO     | . initial setup = 4 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,669 | INFO     | . payload setup = 34 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,670 | INFO     | . stage-in = 0 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,670 | INFO     | . payload execution = 118477 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,670 | INFO     | . stage-out = 8 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,670 | INFO     | . log creation = 2 s
[2025-11-30 12:56:31] 2025-11-30 17:55:41,670 | INFO     | ..............................
[2025-11-30 12:56:31] 2025-11-30 17:55:41,690 | INFO     | time since job start (118619s) is within the limit (172800.0s)
[2025-11-30 12:56:31] 2025-11-30 17:55:42,781 | INFO     | 
[2025-11-30 12:56:31] 2025-11-30 17:55:42,781 | INFO     | job summary report
[2025-11-30 12:56:31] 2025-11-30 17:55:42,781 | INFO     | --------------------------------------------------
[2025-11-30 12:56:31] 2025-11-30 17:55:42,781 | INFO     | PanDA job id: 6898487634
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | task id: 47556161
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | errors: (none)
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | pilot state: finished 
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | transexitcode: 0
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | exeerrorcode: 0
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | exeerrordiag: 
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | exitcode: 0
[2025-11-30 12:56:31] 2025-11-30 17:55:42,782 | INFO     | exitmsg: OK
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | cpuconsumptiontime: 318050 s
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | nevents: 1000
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | neventsw: 0
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | pid: 602682
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | pgrp: 602682
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | corecount: 8
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | event service: False
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | sizes: {0: 2284089, 1: 2284173, 2: 2284372, 13: 2284372, 22: 2284690, 24: 2284718, 118515: 2364652, 118516: 2364651, 118526: 2373757, 118566: 2373947}
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | --------------------------------------------------
[2025-11-30 12:56:31] 2025-11-30 17:55:42,783 | INFO     | 
[2025-11-30 12:56:31] 2025-11-30 17:55:42,784 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 12:56:31] 2025-11-30 17:55:42,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,966 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,966 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 12:56:31] 2025-11-30 17:55:42,981 | INFO     | job 6898487634 has completed (purged errors)
[2025-11-30 12:56:31] 2025-11-30 17:55:42,981 | INFO     | overall cleanup function is called
[2025-11-30 12:56:31] 2025-11-30 17:55:44,090 | INFO     | --- collectZombieJob: --- 10, [602682]
[2025-11-30 12:56:31] 2025-11-30 17:55:44,090 | INFO     | zombie collector waiting for pid 602682
[2025-11-30 12:56:31] 2025-11-30 17:55:44,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 12:56:31] 2025-11-30 17:55:44,090 | INFO     | collected zombie processes
[2025-11-30 12:56:31] 2025-11-30 17:55:44,090 | INFO     | will attempt to kill all subprocesses of pid=602682
[2025-11-30 12:56:31] 2025-11-30 17:55:45,107 | INFO     | process IDs to be killed: [602682] (in reverse order)
[2025-11-30 12:56:31] 2025-11-30 17:55:45,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 12:56:31] 2025-11-30 17:55:45,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 12:56:31] 2025-11-30 17:55:45,311 | INFO     | did not find any defunct processes belonging to 602682
[2025-11-30 12:56:31] 2025-11-30 17:55:45,327 | INFO     | did not find any defunct processes belonging to 602682
[2025-11-30 12:56:31] 2025-11-30 17:55:45,329 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 12:56:31] 2025-11-30 17:55:45,329 | INFO     | ready for new job
[2025-11-30 12:56:31] 2025-11-30 17:55:45,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 12:56:31] 2025-11-30 17:55:45,391 | INFO     | ***************************************
[2025-11-30 12:56:31] 2025-11-30 17:55:45,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 12:56:31] 2025-11-30 17:55:45,391 | INFO     | ***************************************
[2025-11-30 12:56:31] 2025-11-30 17:55:45,391 | INFO     | 
[2025-11-30 12:56:31] 2025-11-30 17:55:45,393 | INFO     | architecture information:
[2025-11-30 12:56:31] 2025-11-30 17:55:45,440 | INFO     | executing command: cat /etc/os-release
[2025-11-30 12:56:31] 2025-11-30 17:55:45,520 | INFO     | cat /etc/os-release:
[2025-11-30 12:56:31] NAME="CentOS Linux"
[2025-11-30 12:56:31] VERSION="7 (Core)"
[2025-11-30 12:56:31] ID="centos"
[2025-11-30 12:56:31] ID_LIKE="rhel fedora"
[2025-11-30 12:56:31] VERSION_ID="7"
[2025-11-30 12:56:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 12:56:31] ANSI_COLOR="0;31"
[2025-11-30 12:56:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 12:56:31] HOME_URL="https://www.centos.org/"
[2025-11-30 12:56:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 12:56:31] 
[2025-11-30 12:56:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 12:56:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 12:56:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 12:56:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 12:56:31] 
[2025-11-30 12:56:31] 2025-11-30 17:55:45,520 | INFO     | ***************************************
[2025-11-30 12:56:31] 2025-11-30 17:55:46,025 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 12:56:31] 2025-11-30 17:55:46,117 | INFO     | sufficient remaining disk space (49871323136 B)
[2025-11-30 12:56:31] 2025-11-30 17:55:46,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 12:56:31] 2025-11-30 17:55:46,117 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 12:56:31] 2025-11-30 17:55:46,118 | INFO     | update_server=False
[2025-11-30 12:56:31] 2025-11-30 17:55:46,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 12:56:31] 2025-11-30 17:55:46,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 12:56:31] 2025-11-30 17:55:46,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 12:56:31] 2025-11-30 17:55:46,119 | INFO     | aborting loop
[2025-11-30 12:56:31] 2025-11-30 17:55:46,119 | INFO     | all payload control threads have been joined
[2025-11-30 12:56:31] 2025-11-30 17:55:46,243 | INFO     | all data control threads have been joined
[2025-11-30 12:56:31] 2025-11-30 17:55:46,686 | INFO     | all job control threads have been joined
[2025-11-30 12:56:31] 2025-11-30 17:55:47,126 | INFO     | [job] retrieve thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,127 | INFO     | [job] job monitor thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,130 | INFO     | [payload] control thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,152 | INFO     | [job] validate thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,249 | INFO     | [data] control thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 12:56:31] 2025-11-30 17:55:47,508 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,692 | INFO     | [job] control thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:47,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,012 | INFO     | [payload] validate_post thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,021 | INFO     | [data] copytool_in thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,085 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,126 | INFO     | [data] copytool_out thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,338 | INFO     | [job] queue monitor thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,501 | INFO     | [payload] failed_post thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,530 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:55:48,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 12:56:31] 2025-11-30 17:55:52,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 12:56:31] 2025-11-30 17:56:15,714 | INFO     | PID=594393 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 12:56:31] 2025-11-30 17:56:15,715 | INFO     | .. there are 8 such processes running
[2025-11-30 12:56:31] 2025-11-30 17:56:15,723 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 12:56:31] 2025-11-30 17:56:15,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 12:56:31] 2025-11-30 17:56:15,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 12:56:31] 2025-11-30 17:56:20,748 | INFO     | [monitor] cgroup control has ended
[2025-11-30 12:56:31] 2025-11-30 17:56:22,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399206606656)>', '<ExcThread(monitor, started 140398555019008)>']
[2025-11-30 12:56:31] 2025-11-30 17:56:23,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 12:56:31] 2025-11-30 17:56:23,776 | INFO     | [monitor] control thread has ended
[2025-11-30 12:56:31] 2025-11-30 17:56:27,837 | INFO     | all workflow threads have been joined
[2025-11-30 12:56:31] 2025-11-30 17:56:27,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 12:56:31] 2025-11-30 17:56:27,837 | INFO     | traces error code: 0
[2025-11-30 12:56:31] 2025-11-30 17:56:27,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 12:56:31] 2025-11-30 17:56:29,306 [wrapper] ==== pilot stdout END ====
[2025-11-30 12:56:31] 2025-11-30 17:56:29,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 12:56:31] 2025-11-30 17:56:29,477 [wrapper] pilotpid: 594393
[2025-11-30 12:56:31] 2025-11-30 17:56:29,532 [wrapper] Pilot exit status: 0
[2025-11-30 12:56:31] 2025-11-30 17:56:29,757 [wrapper] pandaids: 6898487634
[2025-11-30 12:56:31] 2025-11-30 17:56:30,487 [wrapper] cleanup supervisor_pilot 3393187 594394
[2025-11-30 12:56:31] 2025-11-30 17:56:30,537 [wrapper] Test setup, not cleaning
[2025-11-30 12:56:31] 2025-11-30 17:56:30,579 [wrapper] apfmon messages muted
[2025-11-30 12:56:31] 2025-11-30 17:56:30,642 [wrapper] ==== wrapper stdout END ====
[2025-11-30 12:56:31] 2025-11-30 17:56:30,711 [wrapper] ==== wrapper stderr END ====
[2025-11-30 12:56:31]  *** Error codes and diagnostics ***
[2025-11-30 12:56:31]     "exeErrorCode": 0,
[2025-11-30 12:56:31]     "exeErrorDiag": "",
[2025-11-30 12:56:31]     "pilotErrorCode": 0,
[2025-11-30 12:56:31]     "pilotErrorDiag": "",
[2025-11-30 12:56:31]  *** Listing of results directory ***
[2025-11-30 12:56:31] total 1339236
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-30 12:56:31] -rwx------. 1 boincer umatlas     36292 Nov 26 11:39 runpilot2-wrapper.sh
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:41 queuedata.json
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas       100 Nov 29 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 12:56:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 03:57 run_atlas
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas       105 Nov 29 03:57 job.xml
[2025-11-30 12:56:31] -rw-r--r--. 2 boincer umatlas 409213190 Nov 29 03:57 EVNT.47483658._002636.pool.root.1
[2025-11-30 12:56:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 03:57 start_atlas.sh
[2025-11-30 12:56:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 03:57 shared
[2025-11-30 12:56:31] -rw-r--r--. 2 boincer umatlas    590109 Nov 29 03:57 input.tar.gz
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas         0 Nov 29 03:57 boinc_lockfile
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas      2787 Nov 29 03:57 pandaJob.out
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas        57 Nov 29 03:57 setup.sh.local
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas    991818 Nov 29 03:58 agis_schedconf.cvmfs.json
[2025-11-30 12:56:31] drwx------. 5 boincer umatlas      4096 Nov 29 03:58 pilot3
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas       534 Nov 30 12:24 boinc_task_state.xml
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas 922298561 Nov 30 12:53 HITS.47556161._006186.pool.root.1
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas      1060 Nov 30 12:54 memory_monitor_summary.json
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas   1516240 Nov 30 12:54 agis_ddmendpoints.agis.ALL.json
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas   2829228 Nov 30 12:55 log.47556161._006186.job.log.tgz.1
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas      6663 Nov 30 12:55 init_data.xml
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas      8617 Nov 30 12:55 heartbeat.json
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas        95 Nov 30 12:56 pilot_heartbeat.json
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 12:56 boinc_mmap_file
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas      4822 Nov 30 12:56 pilotlog.txt
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas        30 Nov 30 12:56 wrapper_checkpoint.txt
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas  15140812 Nov 30 12:56 log.47556161._006186.job.log.1
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas       353 Nov 30 12:56 output.list
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas       620 Nov 30 12:56 runtime_log
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas  17991680 Nov 30 12:56 result.tar.gz
[2025-11-30 12:56:31] -rw-------. 1 boincer umatlas       663 Nov 30 12:56 tCoMDmviXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkINKDmHO1EQo.diag
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas      9344 Nov 30 12:56 runtime_log.err
[2025-11-30 12:56:31] -rw-r--r--. 1 boincer umatlas     21493 Nov 30 12:56 stderr.txt
[2025-11-30 12:56:32] HITS file was successfully produced:
[2025-11-30 12:56:32] -rw-------. 1 boincer umatlas 922298561 Nov 30 12:53 shared/HITS.pool.root.1
[2025-11-30 12:56:32]  *** Contents of shared directory: ***
[2025-11-30 12:56:32] total 1318484
[2025-11-30 12:56:32] -rw-r--r--. 2 boincer umatlas 409213190 Nov 29 03:57 ATLAS.root_0
[2025-11-30 12:56:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 03:57 start_atlas.sh
[2025-11-30 12:56:32] -rw-r--r--. 2 boincer umatlas    590109 Nov 29 03:57 input.tar.gz
[2025-11-30 12:56:32] -rw-------. 1 boincer umatlas 922298561 Nov 30 12:53 HITS.pool.root.1
[2025-11-30 12:56:32] -rw-------. 1 boincer umatlas  17991680 Nov 30 12:56 result.tar.gz
12:56:33 (589437): run_atlas exited; CPU time 319476.328608
12:56:33 (589437): called boinc_finish(0)

</stderr_txt>
]]>

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