Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:52:03 (26590): wrapper (7.7.26015): starting
10:52:03 (26590): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 10:52:03] Arguments: --nthreads 12
[2025-11-28 10:52:03] Threads: 12
[2025-11-28 10:52:03] Checking for CVMFS
[2025-11-28 10:52:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 10:52:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 10:52:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 10:52:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 10:52:04] 2.11.2.0 2981 290719 94380 153408 1 82 11619885 20275200 1 130560 1 132148431 99.969 16927393 14264 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 10:52:04] CVMFS is ok
[2025-11-28 10:52:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 10:52:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 10:52:04] Further information can be found at the LHC@home message board.
[2025-11-28 10:52:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 10:52:04] Checking for apptainer binary...
[2025-11-28 10:52:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 10:52:04] Running /usr/bin/apptainer --version
[2025-11-28 10:52:04] apptainer version 1.3.2-1.el7
[2025-11-28 10:52:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 10:52:05] c-205-30.aglt2.org
[2025-11-28 10:52:05] apptainer works
[2025-11-28 10:52:05] Set ATHENA_PROC_NUMBER=12
[2025-11-28 10:52:05] Set ATHENA_CORE_NUMBER=12
[2025-11-28 10:52:05] Starting ATLAS job with PandaID=6899448742
[2025-11-28 10:52:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 18:06:08]  *** The last 200 lines of the pilot log: ***
[2025-11-28 18:06:08] 2025-11-28 23:05:21,559 | INFO     | monitor loop #1945: job 0:6899448742 is in state 'finished'
[2025-11-28 18:06:08] 2025-11-28 23:05:21,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 18:06:08] 2025-11-28 23:05:21,686 | INFO     | PID=30271 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 18:06:08] 2025-11-28 23:05:22,686 | INFO     | time since job start (25982s) is within the limit (172800.0s)
[2025-11-28 18:06:08] 2025-11-28 23:05:23,993 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 18:06:08] 2025-11-28 23:05:23,998 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-28 18:06:08] 2025-11-28 23:05:24,001 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6899448742/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,002 | INFO     | extracted standard info from prmon json
[2025-11-28 18:06:08] 2025-11-28 23:05:24,002 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 18:06:08] 2025-11-28 23:05:24,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 18:06:08] 2025-11-28 23:05:24,010 | INFO     | fitting pss+swap vs Time
[2025-11-28 18:06:08] 2025-11-28 23:05:24,011 | INFO     | sum of square deviations: 23971825608.631374
[2025-11-28 18:06:08] 2025-11-28 23:05:24,015 | INFO     | sum of deviations: 333716323013.2465
[2025-11-28 18:06:08] 2025-11-28 23:05:24,015 | INFO     | mean x: 1764358131.7159624
[2025-11-28 18:06:08] 2025-11-28 23:05:24,015 | INFO     | mean y: 3424456.6549295774
[2025-11-28 18:06:08] 2025-11-28 23:05:24,015 | INFO     | intersect: -24558539150.437588
[2025-11-28 18:06:08] 2025-11-28 23:05:24,016 | INFO     | chi2: 6.254140476420536
[2025-11-28 18:06:08] 2025-11-28 23:05:24,016 | INFO     | sum of square deviations: 23137633375.89537
[2025-11-28 18:06:08] 2025-11-28 23:05:24,020 | INFO     | sum of deviations: 507507430159.4629
[2025-11-28 18:06:08] 2025-11-28 23:05:24,020 | INFO     | mean x: 1764357979.2185273
[2025-11-28 18:06:08] 2025-11-28 23:05:24,020 | INFO     | mean y: 3456199.940617577
[2025-11-28 18:06:08] 2025-11-28 23:05:24,021 | INFO     | intersect: -38696473450.05484
[2025-11-28 18:06:08] 2025-11-28 23:05:24,021 | INFO     | chi2: 2.8688827285942833
[2025-11-28 18:06:08] 2025-11-28 23:05:24,021 | INFO     | current chi2=2.8688827285942833 (change=54.12826527625031 %)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,022 | INFO     | sum of square deviations: 22323022905.6539
[2025-11-28 18:06:08] 2025-11-28 23:05:24,025 | INFO     | sum of deviations: 560952576508.9613
[2025-11-28 18:06:08] 2025-11-28 23:05:24,025 | INFO     | mean x: 1764357826.7211537
[2025-11-28 18:06:08] 2025-11-28 23:05:24,026 | INFO     | mean y: 3466159.4134615385
[2025-11-28 18:06:08] 2025-11-28 23:05:24,026 | INFO     | intersect: -44332870947.16673
[2025-11-28 18:06:08] 2025-11-28 23:05:24,026 | INFO     | chi2: 2.3112351232867865
[2025-11-28 18:06:08] 2025-11-28 23:05:24,026 | INFO     | current chi2=2.3112351232867865 (change=19.437797151810983 %)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,026 | INFO     | right removable region: 415
[2025-11-28 18:06:08] 2025-11-28 23:05:24,027 | INFO     | sum of square deviations: 23137577255.89536
[2025-11-28 18:06:08] 2025-11-28 23:05:24,031 | INFO     | sum of deviations: 203346123480.32056
[2025-11-28 18:06:08] 2025-11-28 23:05:24,031 | INFO     | mean x: 1764358284.2185273
[2025-11-28 18:06:08] 2025-11-28 23:05:24,031 | INFO     | mean y: 3448202.4204275534
[2025-11-28 18:06:08] 2025-11-28 23:05:24,031 | INFO     | intersect: -15502730925.94154
[2025-11-28 18:06:08] 2025-11-28 23:05:24,032 | INFO     | chi2: 4.095526773359182
[2025-11-28 18:06:08] 2025-11-28 23:05:24,032 | INFO     | current chi2=4.095526773359182 (change=34.51495391252876 %)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,032 | INFO     | sum of square deviations: 22322910665.653904
[2025-11-28 18:06:08] 2025-11-28 23:05:24,036 | INFO     | sum of deviations: 170783603740.3658
[2025-11-28 18:06:08] 2025-11-28 23:05:24,036 | INFO     | mean x: 1764358436.7211537
[2025-11-28 18:06:08] 2025-11-28 23:05:24,036 | INFO     | mean y: 3454291.8221153845
[2025-11-28 18:06:08] 2025-11-28 23:05:24,036 | INFO     | intersect: -13494941890.740852
[2025-11-28 18:06:08] 2025-11-28 23:05:24,037 | INFO     | chi2: 4.040755975678274
[2025-11-28 18:06:08] 2025-11-28 23:05:24,037 | INFO     | current chi2=4.040755975678274 (change=1.3373321848897137 %)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,037 | INFO     | left removable region: 20
[2025-11-28 18:06:08] 2025-11-28 23:05:24,037 | INFO     | sum of square deviations: 19110093000.946823
[2025-11-28 18:06:08] 2025-11-28 23:05:24,041 | INFO     | sum of deviations: 355360174433.08325
[2025-11-28 18:06:08] 2025-11-28 23:05:24,041 | INFO     | mean x: 1764358406.2253165
[2025-11-28 18:06:08] 2025-11-28 23:05:24,041 | INFO     | mean y: 3505274.9316455694
[2025-11-28 18:06:08] 2025-11-28 23:05:24,041 | INFO     | intersect: -32805477442.61143
[2025-11-28 18:06:08] 2025-11-28 23:05:24,042 | INFO     | chi2: 0.04034777709545161
[2025-11-28 18:06:08] 2025-11-28 23:05:24,042 | INFO     | current memory leak: 18.60 B/s (using 395 data points, chi2=0.04)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,042 | INFO     | could have reported an average CPU frequency of 2376 MHz (18 samples)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,042 | INFO     | ..............................
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . Timing measurements:
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . get job = 0 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . initial setup = 2 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . payload setup = 7 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . stage-in = 0 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . payload execution = 25946 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . stage-out = 3 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | . log creation = 0 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,043 | INFO     | ..............................
[2025-11-28 18:06:08] 2025-11-28 23:05:24,126 | INFO     | 
[2025-11-28 18:06:08] 2025-11-28 23:05:24,126 | INFO     | job summary report
[2025-11-28 18:06:08] 2025-11-28 23:05:24,126 | INFO     | --------------------------------------------------
[2025-11-28 18:06:08] 2025-11-28 23:05:24,126 | INFO     | PanDA job id: 6899448742
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | task id: 47556173
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | errors: (none)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | pilot state: finished 
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | transexitcode: 0
[2025-11-28 18:06:08] 2025-11-28 23:05:24,127 | INFO     | exeerrorcode: 0
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | exeerrordiag: 
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | exitcode: 0
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | exitmsg: OK
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | cpuconsumptiontime: 297598 s
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | nevents: 1000
[2025-11-28 18:06:08] 2025-11-28 23:05:24,128 | INFO     | neventsw: 0
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | pid: 4449
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | pgrp: 4449
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | corecount: 12
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | event service: False
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | sizes: {0: 2284316, 5: 2284578, 11: 2284634, 25957: 2321954, 25960: 2330948, 25961: 2331004, 25967: 2331378}
[2025-11-28 18:06:08] 2025-11-28 23:05:24,129 | INFO     | --------------------------------------------------
[2025-11-28 18:06:08] 2025-11-28 23:05:24,130 | INFO     | 
[2025-11-28 18:06:08] 2025-11-28 23:05:24,130 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 18:06:08] 2025-11-28 23:05:24,152 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,153 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,153 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,153 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,153 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,153 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 18:06:08] 2025-11-28 23:05:24,156 | INFO     | job 6899448742 has completed (purged errors)
[2025-11-28 18:06:08] 2025-11-28 23:05:24,156 | INFO     | overall cleanup function is called
[2025-11-28 18:06:08] 2025-11-28 23:05:25,171 | INFO     | --- collectZombieJob: --- 10, [4449]
[2025-11-28 18:06:08] 2025-11-28 23:05:25,171 | INFO     | zombie collector waiting for pid 4449
[2025-11-28 18:06:08] 2025-11-28 23:05:25,171 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 18:06:08] 2025-11-28 23:05:25,172 | INFO     | collected zombie processes
[2025-11-28 18:06:08] 2025-11-28 23:05:25,172 | INFO     | will attempt to kill all subprocesses of pid=4449
[2025-11-28 18:06:08] 2025-11-28 23:05:25,266 | INFO     | process IDs to be killed: [4449] (in reverse order)
[2025-11-28 18:06:08] 2025-11-28 23:05:25,316 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 18:06:08] 2025-11-28 23:05:25,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 18:06:08] 2025-11-28 23:05:25,320 | INFO     | did not find any defunct processes belonging to 4449
[2025-11-28 18:06:08] 2025-11-28 23:05:25,322 | INFO     | did not find any defunct processes belonging to 4449
[2025-11-28 18:06:08] 2025-11-28 23:05:25,324 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 18:06:08] 2025-11-28 23:05:25,325 | INFO     | ready for new job
[2025-11-28 18:06:08] 2025-11-28 23:05:25,325 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 18:06:08] 2025-11-28 23:05:25,327 | INFO     | ***************************************
[2025-11-28 18:06:08] 2025-11-28 23:05:25,327 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 18:06:08] 2025-11-28 23:05:25,327 | INFO     | ***************************************
[2025-11-28 18:06:08] 2025-11-28 23:05:25,327 | INFO     | 
[2025-11-28 18:06:08] 2025-11-28 23:05:25,328 | INFO     | architecture information:
[2025-11-28 18:06:08] 2025-11-28 23:05:25,328 | INFO     | executing command: cat /etc/os-release
[2025-11-28 18:06:08] 2025-11-28 23:05:25,343 | INFO     | cat /etc/os-release:
[2025-11-28 18:06:08] NAME="CentOS Linux"
[2025-11-28 18:06:08] VERSION="7 (Core)"
[2025-11-28 18:06:08] ID="centos"
[2025-11-28 18:06:08] ID_LIKE="rhel fedora"
[2025-11-28 18:06:08] VERSION_ID="7"
[2025-11-28 18:06:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 18:06:08] ANSI_COLOR="0;31"
[2025-11-28 18:06:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 18:06:08] HOME_URL="https://www.centos.org/"
[2025-11-28 18:06:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 18:06:08] 
[2025-11-28 18:06:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 18:06:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 18:06:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 18:06:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 18:06:08] 
[2025-11-28 18:06:08] 2025-11-28 23:05:25,344 | INFO     | ***************************************
[2025-11-28 18:06:08] 2025-11-28 23:05:25,847 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 18:06:08] 2025-11-28 23:05:25,864 | INFO     | sufficient remaining disk space (28237103104 B)
[2025-11-28 18:06:08] 2025-11-28 23:05:25,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 18:06:08] 2025-11-28 23:05:25,865 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 18:06:08] 2025-11-28 23:05:25,865 | INFO     | update_server=False
[2025-11-28 18:06:08] 2025-11-28 23:05:25,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 18:06:08] 2025-11-28 23:05:25,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 18:06:08] 2025-11-28 23:05:25,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:06:08] 2025-11-28 23:05:25,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:06:08] 2025-11-28 23:05:25,867 | INFO     | aborting loop
[2025-11-28 18:06:08] 2025-11-28 23:05:25,951 | INFO     | all data control threads have been joined
[2025-11-28 18:06:08] 2025-11-28 23:05:26,100 | INFO     | all payload control threads have been joined
[2025-11-28 18:06:08] 2025-11-28 23:05:26,870 | INFO     | [job] retrieve thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:26,871 | INFO     | [job] queue monitor thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:26,872 | INFO     | [job] job monitor thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:26,914 | INFO     | all job control threads have been joined
[2025-11-28 18:06:08] 2025-11-28 23:05:26,921 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:26,956 | INFO     | [data] control thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:26,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,105 | INFO     | [payload] control thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,192 | INFO     | [payload] failed_post thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,265 | INFO     | [job] validate thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,382 | INFO     | [payload] validate_post thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,656 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,871 | INFO     | [data] copytool_out thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:27,919 | INFO     | [job] control thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:28,000 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:28,245 | INFO     | [data] copytool_in thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:28,816 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 18:06:08] 2025-11-28 23:05:32,822 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 18:06:08] 2025-11-28 23:05:55,890 | INFO     | PID=30271 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 18:06:08] 2025-11-28 23:05:55,891 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 18:06:08] 2025-11-28 23:05:55,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 18:06:08] 2025-11-28 23:05:55,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 18:06:08] 2025-11-28 23:06:02,546 | INFO     | [monitor] cgroup control has ended
[2025-11-28 18:06:08] 2025-11-28 23:06:03,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510262970176)>', '<ExcThread(monitor, started 140509276251904)>']
[2025-11-28 18:06:08] 2025-11-28 23:06:03,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 18:06:08] 2025-11-28 23:06:03,930 | INFO     | [monitor] control thread has ended
[2025-11-28 18:06:08] 2025-11-28 23:06:08,004 | INFO     | all workflow threads have been joined
[2025-11-28 18:06:08] 2025-11-28 23:06:08,004 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 18:06:08] 2025-11-28 23:06:08,004 | INFO     | traces error code: 0
[2025-11-28 18:06:08] 2025-11-28 23:06:08,005 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 18:06:08] 2025-11-28 23:06:08,094 [wrapper] ==== pilot stdout END ====
[2025-11-28 18:06:08] 2025-11-28 23:06:08,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 18:06:08] 2025-11-28 23:06:08,101 [wrapper] pilotpid: 30271
[2025-11-28 18:06:08] 2025-11-28 23:06:08,106 [wrapper] Pilot exit status: 0
[2025-11-28 18:06:08] 2025-11-28 23:06:08,120 [wrapper] pandaids: 6899448742
[2025-11-28 18:06:08] 2025-11-28 23:06:08,165 [wrapper] cleanup supervisor_pilot 25697 30272
[2025-11-28 18:06:08] 2025-11-28 23:06:08,168 [wrapper] Test setup, not cleaning
[2025-11-28 18:06:08] 2025-11-28 23:06:08,172 [wrapper] apfmon messages muted
[2025-11-28 18:06:08] 2025-11-28 23:06:08,176 [wrapper] ==== wrapper stdout END ====
[2025-11-28 18:06:08] 2025-11-28 23:06:08,179 [wrapper] ==== wrapper stderr END ====
[2025-11-28 18:06:08]  *** Error codes and diagnostics ***
[2025-11-28 18:06:08]     "exeErrorCode": 0,
[2025-11-28 18:06:08]     "exeErrorDiag": "",
[2025-11-28 18:06:08]     "pilotErrorCode": 0,
[2025-11-28 18:06:08]     "pilotErrorDiag": "",
[2025-11-28 18:06:08]  *** Listing of results directory ***
[2025-11-28 18:06:08] total 1318664
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-28 18:06:08] -rwx------ 1 boincer umatlas     36292 Nov 26 20:29 runpilot2-wrapper.sh
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 20:31 queuedata.json
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas       100 Nov 28 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 18:06:08] -rwxr-xr-x 1 boincer umatlas      7986 Nov 28 10:52 run_atlas
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas       105 Nov 28 10:52 job.xml
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas 412625694 Nov 28 10:52 EVNT.47483658._003301.pool.root.1
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 10:52 start_atlas.sh
[2025-11-28 18:06:08] drwxrwx--x 2 boincer umatlas      4096 Nov 28 10:52 shared
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas    590112 Nov 28 10:52 input.tar.gz
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas         0 Nov 28 10:52 boinc_lockfile
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas      2787 Nov 28 10:52 pandaJob.out
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas        57 Nov 28 10:52 setup.sh.local
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas    991856 Nov 28 10:52 agis_schedconf.cvmfs.json
[2025-11-28 18:06:08] drwx------ 5 boincer umatlas      4096 Nov 28 10:52 pilot3
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas       532 Nov 28 17:55 boinc_task_state.xml
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas      5955 Nov 28 18:03 init_data.xml
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas 922146518 Nov 28 18:04 HITS.47556173._002577.pool.root.1
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas      1064 Nov 28 18:05 memory_monitor_summary.json
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas   1516240 Nov 28 18:05 agis_ddmendpoints.agis.ALL.json
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas   2175415 Nov 28 18:05 log.47556173._002577.job.log.tgz.1
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas      8664 Nov 28 18:05 heartbeat.json
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas        29 Nov 28 18:05 wrapper_checkpoint.txt
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 18:05 boinc_mmap_file
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas        95 Nov 28 18:05 pilot_heartbeat.json
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas      4746 Nov 28 18:06 pilotlog.txt
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas   3632875 Nov 28 18:06 log.47556173._002577.job.log.1
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas       353 Nov 28 18:06 output.list
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas       620 Nov 28 18:06 runtime_log
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas   5826560 Nov 28 18:06 result.tar.gz
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas      9345 Nov 28 18:06 runtime_log.err
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas       670 Nov 28 18:06 IpsNDmE0fi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTVKKDmsB6Olm.diag
[2025-11-28 18:06:08] -rw-r--r-- 1 boincer umatlas     21420 Nov 28 18:06 stderr.txt
[2025-11-28 18:06:08] HITS file was successfully produced:
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas 922146518 Nov 28 18:04 shared/HITS.pool.root.1
[2025-11-28 18:06:08]  *** Contents of shared directory: ***
[2025-11-28 18:06:08] total 1309788
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas 412625694 Nov 28 10:52 ATLAS.root_0
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 10:52 start_atlas.sh
[2025-11-28 18:06:08] -rw-r--r-- 2 boincer umatlas    590112 Nov 28 10:52 input.tar.gz
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas 922146518 Nov 28 18:04 HITS.pool.root.1
[2025-11-28 18:06:08] -rw------- 1 boincer umatlas   5826560 Nov 28 18:06 result.tar.gz
18:06:10 (26590): run_atlas exited; CPU time 290640.169285
18:06:10 (26590): called boinc_finish(0)

</stderr_txt>
]]>

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