Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:21:06 (3559658): wrapper (7.7.26015): starting
07:21:06 (3559658): wrapper: running run_atlas (--nthreads 4)
[2025-12-01 07:21:06] Arguments: --nthreads 4
[2025-12-01 07:21:06] Threads: 4
[2025-12-01 07:21:06] Checking for CVMFS
[2025-12-01 07:21:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 07:21:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 07:21:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 07:21:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 07:21:06] 2.9.2.0 844198 18159 102112 153508 3 80 35902700 36864001 0 130560 1 7153833 99.953 825294 1327 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-01 07:21:06] CVMFS is ok
[2025-12-01 07:21:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 07:21:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 07:21:06] Further information can be found at the LHC@home message board.
[2025-12-01 07:21:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 07:21:06] Checking for apptainer binary...
[2025-12-01 07:21:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 07:21:06] Running /usr/bin/apptainer --version
[2025-12-01 07:21:06] apptainer version 1.4.1-1.1
[2025-12-01 07:21:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 07:21:06] thA309
[2025-12-01 07:21:06] apptainer works
[2025-12-01 07:21:06] Set ATHENA_PROC_NUMBER=4
[2025-12-01 07:21:06] Set ATHENA_CORE_NUMBER=4
[2025-12-01 07:21:06] Starting ATLAS job with PandaID=6898988802
[2025-12-01 07:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 14:10:59]  *** The last 200 lines of the pilot log: ***
[2025-12-01 14:10:59] 2025-12-01 13:10:26,893 | INFO     | job 6898988802 has completed (purged errors)
[2025-12-01 14:10:59] 2025-12-01 13:10:26,894 | INFO     | overall cleanup function is called
[2025-12-01 14:10:59] 2025-12-01 13:10:27,903 | INFO     | --- collectZombieJob: --- 10, [3570019]
[2025-12-01 14:10:59] 2025-12-01 13:10:27,903 | INFO     | zombie collector waiting for pid 3570019
[2025-12-01 14:10:59] 2025-12-01 13:10:27,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 14:10:59] 2025-12-01 13:10:27,903 | INFO     | collected zombie processes
[2025-12-01 14:10:59] 2025-12-01 13:10:27,904 | INFO     | will attempt to kill all subprocesses of pid=3570019
[2025-12-01 14:10:59] 2025-12-01 13:10:27,949 | INFO     | process IDs to be killed: [3570019] (in reverse order)
[2025-12-01 14:10:59] 2025-12-01 13:10:27,982 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 14:10:59] 2025-12-01 13:10:27,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 14:10:59] 2025-12-01 13:10:27,984 | INFO     | did not find any defunct processes belonging to 3570019
[2025-12-01 14:10:59] 2025-12-01 13:10:27,986 | INFO     | did not find any defunct processes belonging to 3570019
[2025-12-01 14:10:59] 2025-12-01 13:10:27,986 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 14:10:59] 2025-12-01 13:10:27,986 | INFO     | ready for new job
[2025-12-01 14:10:59] 2025-12-01 13:10:27,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 14:10:59] 2025-12-01 13:10:27,988 | INFO     | ***************************************
[2025-12-01 14:10:59] 2025-12-01 13:10:27,988 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 14:10:59] 2025-12-01 13:10:27,988 | INFO     | ***************************************
[2025-12-01 14:10:59] 2025-12-01 13:10:27,988 | INFO     | 
[2025-12-01 14:10:59] 2025-12-01 13:10:27,988 | INFO     | architecture information:
[2025-12-01 14:10:59] 2025-12-01 13:10:27,989 | INFO     | executing command: cat /etc/os-release
[2025-12-01 14:10:59] 2025-12-01 13:10:28,003 | INFO     | cat /etc/os-release:
[2025-12-01 14:10:59] NAME="CentOS Linux"
[2025-12-01 14:10:59] VERSION="7 (Core)"
[2025-12-01 14:10:59] ID="centos"
[2025-12-01 14:10:59] ID_LIKE="rhel fedora"
[2025-12-01 14:10:59] VERSION_ID="7"
[2025-12-01 14:10:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 14:10:59] ANSI_COLOR="0;31"
[2025-12-01 14:10:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 14:10:59] HOME_URL="https://www.centos.org/"
[2025-12-01 14:10:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 14:10:59] 
[2025-12-01 14:10:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 14:10:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 14:10:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 14:10:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 14:10:59] 
[2025-12-01 14:10:59] 2025-12-01 13:10:28,003 | INFO     | ***************************************
[2025-12-01 14:10:59] 2025-12-01 13:10:28,506 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-01 14:10:59] 2025-12-01 13:10:28,524 | INFO     | sufficient remaining disk space (220204105728 B)
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | INFO     | update_server=False
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 14:10:59] 2025-12-01 13:10:28,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 14:10:59] 2025-12-01 13:10:28,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 14:10:59] 2025-12-01 13:10:28,787 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 14:10:59] 2025-12-01 13:10:28,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 14:10:59] 2025-12-01 13:10:28,787 | INFO     | will abort loop
[2025-12-01 14:10:59] 2025-12-01 13:10:29,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 14:10:59] 2025-12-01 13:10:29,379 | INFO     | all payload control threads have been joined
[2025-12-01 14:10:59] 2025-12-01 13:10:29,531 | INFO     | [job] retrieve thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:29,531 | INFO     | [job] queue monitor thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:29,575 | INFO     | all job control threads have been joined
[2025-12-01 14:10:59] 2025-12-01 13:10:29,602 | INFO     | all data control threads have been joined
[2025-12-01 14:10:59] 2025-12-01 13:10:29,793 | INFO     | [job] job monitor thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:29,890 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:29,998 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,136 | INFO     | [job] validate thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,144 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,385 | INFO     | [payload] control thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,531 | INFO     | [data] copytool_out thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,580 | INFO     | [job] control thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,608 | INFO     | [data] control thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,739 | INFO     | [payload] failed_post thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,784 | INFO     | [payload] validate_post thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,837 | INFO     | [data] copytool_in thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:30,905 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:33,385 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 14:10:59] 2025-12-01 13:10:47,441 | INFO     | [monitor] cgroup control has ended
[2025-12-01 14:10:59] 2025-12-01 13:10:49,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034923947840)>', '<ExcThread(monitor, started 140034405537536)>']
[2025-12-01 14:10:59] 2025-12-01 13:10:54,431 | INFO     | all workflow threads have been joined
[2025-12-01 14:10:59] 2025-12-01 13:10:54,431 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 14:10:59] 2025-12-01 13:10:54,431 | INFO     | traces error code: 0
[2025-12-01 14:10:59] 2025-12-01 13:10:54,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 14:10:59] 2025-12-01 13:10:59,119 | INFO     | PID=3563459 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 14:10:59] 2025-12-01 13:10:59,120 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 14:10:59] 2025-12-01 13:10:59,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 14:10:59] 2025-12-01 13:10:59,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 14:10:59] 2025-12-01 13:10:59,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 14:10:59] 2025-12-01 13:10:59,120 | INFO     | [monitor] control thread has ended
[2025-12-01 14:10:59] 2025-12-01 13:10:59,196 [wrapper] ==== pilot stdout END ====
[2025-12-01 14:10:59] 2025-12-01 13:10:59,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 14:10:59] 2025-12-01 13:10:59,205 [wrapper] pilotpid: 3563459
[2025-12-01 14:10:59] 2025-12-01 13:10:59,209 [wrapper] Pilot exit status: 0
[2025-12-01 14:10:59] 2025-12-01 13:10:59,221 [wrapper] pandaids: 6898988802
[2025-12-01 14:10:59] 2025-12-01 13:10:59,245 [wrapper] cleanup supervisor_pilot 3614519 3563460
[2025-12-01 14:10:59] 2025-12-01 13:10:59,249 [wrapper] Test setup, not cleaning
[2025-12-01 14:10:59] 2025-12-01 13:10:59,253 [wrapper] apfmon messages muted
[2025-12-01 14:10:59] 2025-12-01 13:10:59,257 [wrapper] ==== wrapper stdout END ====
[2025-12-01 14:10:59] 2025-12-01 13:10:59,261 [wrapper] ==== wrapper stderr END ====
[2025-12-01 14:10:59]  *** Error codes and diagnostics ***
[2025-12-01 14:10:59]     "exeErrorCode": 0,
[2025-12-01 14:10:59]     "exeErrorDiag": "",
[2025-12-01 14:10:59]     "pilotErrorCode": 0,
[2025-12-01 14:10:59]     "pilotErrorDiag": "",
[2025-12-01 14:10:59]  *** Listing of results directory ***
[2025-12-01 14:10:59] total 1298540
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-01 14:10:59] -rwx------ 1 boinc boinc     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc      5112 Nov 27 02:30 queuedata.json
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc       100 Dec  1 07:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 14:10:59] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 07:21 run_atlas
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc       105 Dec  1 07:21 job.xml
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc 405808886 Dec  1 07:21 EVNT.47483658._002771.pool.root.1
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc    590111 Dec  1 07:21 input.tar.gz
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc     15847 Dec  1 07:21 start_atlas.sh
[2025-12-01 14:10:59] drwxrwx--x 2 boinc boinc      4096 Dec  1 07:21 shared
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc         0 Dec  1 07:21 boinc_setup_complete
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc      6378 Dec  1 07:21 init_data.xml
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc         0 Dec  1 07:21 boinc_lockfile
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc      2788 Dec  1 07:21 pandaJob.out
[2025-12-01 14:10:59] -rw------- 1 boinc boinc    992513 Dec  1 07:21 agis_schedconf.cvmfs.json
[2025-12-01 14:10:59] drwx------ 5 boinc boinc      4096 Dec  1 07:21 pilot3
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc       532 Dec  1 14:06 boinc_task_state.xml
[2025-12-01 14:10:59] -rw------- 1 boinc boinc 910716806 Dec  1 14:09 HITS.47556161._007536.pool.root.1
[2025-12-01 14:10:59] -rw------- 1 boinc boinc      1028 Dec  1 14:10 memory_monitor_summary.json
[2025-12-01 14:10:59] -rw------- 1 boinc boinc   1516240 Dec  1 14:10 agis_ddmendpoints.agis.ALL.json
[2025-12-01 14:10:59] -rw------- 1 boinc boinc   1251357 Dec  1 14:10 log.47556161._007536.job.log.tgz.1
[2025-12-01 14:10:59] -rw------- 1 boinc boinc      8569 Dec  1 14:10 heartbeat.json
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc      8192 Dec  1 14:10 boinc_mmap_file
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc        28 Dec  1 14:10 wrapper_checkpoint.txt
[2025-12-01 14:10:59] -rw------- 1 boinc boinc       747 Dec  1 14:10 pilotlog.txt
[2025-12-01 14:10:59] -rw------- 1 boinc boinc        95 Dec  1 14:10 pilot_heartbeat.json
[2025-12-01 14:10:59] -rw------- 1 boinc boinc   3391485 Dec  1 14:10 log.47556161._007536.job.log.1
[2025-12-01 14:10:59] -rw------- 1 boinc boinc       353 Dec  1 14:10 output.list
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc       620 Dec  1 14:10 runtime_log
[2025-12-01 14:10:59] -rw------- 1 boinc boinc   4659200 Dec  1 14:10 result.tar.gz
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc      8898 Dec  1 14:10 runtime_log.err
[2025-12-01 14:10:59] -rw------- 1 boinc boinc       665 Dec  1 14:10 QpdNDmQzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBaNKDmP9J8im.diag
[2025-12-01 14:10:59] -rw-r--r-- 1 boinc boinc     11266 Dec  1 14:10 stderr.txt
[2025-12-01 14:10:59] HITS file was successfully produced:
[2025-12-01 14:10:59] -rw------- 1 boinc boinc 910716806 Dec  1 14:09 shared/HITS.pool.root.1
[2025-12-01 14:10:59]  *** Contents of shared directory: ***
[2025-12-01 14:10:59] total 1290824
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc 405808886 Dec  1 07:21 ATLAS.root_0
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc    590111 Dec  1 07:21 input.tar.gz
[2025-12-01 14:10:59] -rw-r--r-- 2 boinc boinc     15847 Dec  1 07:21 start_atlas.sh
[2025-12-01 14:10:59] -rw------- 1 boinc boinc 910716806 Dec  1 14:09 HITS.pool.root.1
[2025-12-01 14:10:59] -rw------- 1 boinc boinc   4659200 Dec  1 14:10 result.tar.gz
14:11:00 (3559658): run_atlas exited; CPU time 96177.819015
14:11:00 (3559658): called boinc_finish(0)

</stderr_txt>
]]>

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