Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
04:23:04 (3311964): wrapper (7.7.26015): starting
04:23:04 (3311964): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 04:23:04] Arguments: --nthreads 4
[2025-11-28 04:23:04] Threads: 4
[2025-11-28 04:23:04] Checking for CVMFS
[2025-11-28 04:23:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:23:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:23:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:23:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:23:04] 2.13.2.0 774864 7002 58692 153408 2 81 3744942 4096001 5100 130560 0 20475750 99.970 679055 1221 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-28 04:23:04] CVMFS is ok
[2025-11-28 04:23:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 04:23:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-28 04:23:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-28 04:23:04] Further information can be found at the LHC@home message board.
[2025-11-28 04:23:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:23:04] Checking for apptainer binary...
[2025-11-28 04:23:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 04:23:04] Running /usr/bin/apptainer --version
[2025-11-28 04:23:04] apptainer version 1.4.3
[2025-11-28 04:23:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:23:04] msi670e
[2025-11-28 04:23:04] apptainer works
[2025-11-28 04:23:04] Set ATHENA_PROC_NUMBER=4
[2025-11-28 04:23:04] Set ATHENA_CORE_NUMBER=4
[2025-11-28 04:23:04] Starting ATLAS job with PandaID=6900295570
[2025-11-28 04:23:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 11:11:08]  *** The last 200 lines of the pilot log: ***
[2025-11-28 11:11:08] 2025-11-28 18:10:35,847 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 11:11:08] 2025-11-28 18:10:35,849 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5023.677218749999
[2025-11-28 11:11:08] 2025-11-28 18:10:35,852 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6900295570/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,852 | INFO     | extracted standard info from prmon json
[2025-11-28 11:11:08] 2025-11-28 18:10:35,852 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 11:11:08] 2025-11-28 18:10:35,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 11:11:08] 2025-11-28 18:10:35,855 | INFO     | fitting pss+swap vs Time
[2025-11-28 11:11:08] 2025-11-28 18:10:35,855 | INFO     | sum of square deviations: 19994421400.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | sum of deviations: -7637320109.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | mean x: 1764341214.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | mean y: 2307128.416458853
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | intersect: 676237039.327493
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | chi2: 3.5244353155248977
[2025-11-28 11:11:08] 2025-11-28 18:10:35,857 | INFO     | sum of square deviations: 19255784295.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | sum of deviations: 61467625237.50001
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | mean x: 1764341061.5
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | mean y: 2321325.4267676766
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | intersect: -5629745044.758698
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | chi2: 1.5937950219529933
[2025-11-28 11:11:08] 2025-11-28 18:10:35,859 | INFO     | current chi2=1.5937950219529933 (change=54.77871263710148 %)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,860 | INFO     | sum of square deviations: 18535566140.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | sum of deviations: 61428053714.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | mean x: 1764340909.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | mean y: 2321317.0153452684
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | intersect: -5844817492.193941
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | chi2: 1.593637944804498
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | current chi2=1.593637944804498 (change=0.009855542672159594 %)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,861 | INFO     | right removable region: 390
[2025-11-28 11:11:08] 2025-11-28 18:10:35,862 | INFO     | sum of square deviations: 19255784295.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,863 | INFO     | sum of deviations: -68192114018.5
[2025-11-28 11:11:08] 2025-11-28 18:10:35,863 | INFO     | mean x: 1764341366.5
[2025-11-28 11:11:08] 2025-11-28 18:10:35,863 | INFO     | mean y: 2319561.643939394
[2025-11-28 11:11:08] 2025-11-28 18:10:35,863 | INFO     | intersect: 6250528712.136196
[2025-11-28 11:11:08] 2025-11-28 18:10:35,864 | INFO     | chi2: 1.9911937965554487
[2025-11-28 11:11:08] 2025-11-28 18:10:35,864 | INFO     | current chi2=1.9911937965554487 (change=43.50318226059149 %)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,864 | INFO     | sum of square deviations: 18535566140.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,865 | INFO     | sum of deviations: -72798278522.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,865 | INFO     | mean x: 1764341519.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | mean y: 2320535.7442455245
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | intersect: 6931756860.37385
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | chi2: 1.9824115954656043
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | current chi2=1.9824115954656043 (change=0.44105205153996885 %)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | left removable region: 20
[2025-11-28 11:11:08] 2025-11-28 18:10:35,866 | INFO     | sum of square deviations: 15706536352.5
[2025-11-28 11:11:08] 2025-11-28 18:10:35,867 | INFO     | sum of deviations: -7938771678.0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,867 | INFO     | mean x: 1764341488.5
[2025-11-28 11:11:08] 2025-11-28 18:10:35,867 | INFO     | mean y: 2336474.6486486485
[2025-11-28 11:11:08] 2025-11-28 18:10:35,867 | INFO     | intersect: 894111970.2049762
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | chi2: 0.02590655078066046
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | current memory leak: -0.51 B/s (using 370 data points, chi2=0.03)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | could have reported an average CPU frequency of 4969 MHz (17 samples)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | ..............................
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . Timing measurements:
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . get job = 0 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . initial setup = 6 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . payload setup = 2 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . stage-in = 0 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . payload execution = 24410 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . stage-out = 6 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | . log creation = 0 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,868 | INFO     | ..............................
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | 
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | job summary report
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | --------------------------------------------------
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | PanDA job id: 6900295570
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | task id: 47556173
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | errors: (none)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | pilot state: finished 
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | transexitcode: 0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | exeerrorcode: 0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | exeerrordiag: 
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | exitcode: 0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | exitmsg: OK
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | cpuconsumptiontime: 96833 s
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | nevents: 1000
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | neventsw: 0
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | pid: 3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | pgrp: 3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | corecount: 4
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | event service: False
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | sizes: {0: 2284323, 2: 2284585, 10: 2284613, 24417: 2321048, 24423: 2330056, 24426: 2330112, 24428: 2330550}
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | --------------------------------------------------
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | 
[2025-11-28 11:11:08] 2025-11-28 18:10:35,909 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 11:11:08] 2025-11-28 18:10:35,921 | INFO     | job 6900295570 has completed (purged errors)
[2025-11-28 11:11:08] 2025-11-28 18:10:35,921 | INFO     | overall cleanup function is called
[2025-11-28 11:11:08] 2025-11-28 18:10:36,404 | INFO     | PID=3315820 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 11:11:08] 2025-11-28 18:10:36,404 | INFO     | .. there are 7 such processes running
[2025-11-28 11:11:08] 2025-11-28 18:10:36,930 | INFO     | --- collectZombieJob: --- 10, [3322487]
[2025-11-28 11:11:08] 2025-11-28 18:10:36,930 | INFO     | zombie collector waiting for pid 3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:36,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 11:11:08] 2025-11-28 18:10:36,930 | INFO     | collected zombie processes
[2025-11-28 11:11:08] 2025-11-28 18:10:36,930 | INFO     | will attempt to kill all subprocesses of pid=3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:37,017 | INFO     | process IDs to be killed: [3322487] (in reverse order)
[2025-11-28 11:11:08] 2025-11-28 18:10:37,055 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 11:11:08] 2025-11-28 18:10:37,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 11:11:08] 2025-11-28 18:10:37,058 | INFO     | did not find any defunct processes belonging to 3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:37,061 | INFO     | did not find any defunct processes belonging to 3322487
[2025-11-28 11:11:08] 2025-11-28 18:10:37,062 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 11:11:08] 2025-11-28 18:10:37,062 | INFO     | ready for new job
[2025-11-28 11:11:08] 2025-11-28 18:10:37,062 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 11:11:08] 2025-11-28 18:10:37,063 | INFO     | ***************************************
[2025-11-28 11:11:08] 2025-11-28 18:10:37,064 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 11:11:08] 2025-11-28 18:10:37,064 | INFO     | ***************************************
[2025-11-28 11:11:08] 2025-11-28 18:10:37,064 | INFO     | 
[2025-11-28 11:11:08] 2025-11-28 18:10:37,065 | INFO     | architecture information:
[2025-11-28 11:11:08] 2025-11-28 18:10:37,065 | INFO     | executing command: cat /etc/os-release
[2025-11-28 11:11:08] 2025-11-28 18:10:37,074 | INFO     | cat /etc/os-release:
[2025-11-28 11:11:08] NAME="CentOS Linux"
[2025-11-28 11:11:08] VERSION="7 (Core)"
[2025-11-28 11:11:08] ID="centos"
[2025-11-28 11:11:08] ID_LIKE="rhel fedora"
[2025-11-28 11:11:08] VERSION_ID="7"
[2025-11-28 11:11:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 11:11:08] ANSI_COLOR="0;31"
[2025-11-28 11:11:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 11:11:08] HOME_URL="https://www.centos.org/"
[2025-11-28 11:11:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 11:11:08] 
[2025-11-28 11:11:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 11:11:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 11:11:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 11:11:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 11:11:08] 
[2025-11-28 11:11:08] 2025-11-28 18:10:37,074 | INFO     | ***************************************
[2025-11-28 11:11:08] 2025-11-28 18:10:37,576 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-28 11:11:08] 2025-11-28 18:10:37,585 | INFO     | sufficient remaining disk space (437398798336 B)
[2025-11-28 11:11:08] 2025-11-28 18:10:37,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 11:11:08] 2025-11-28 18:10:37,585 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | INFO     | update_server=False
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:11:08] 2025-11-28 18:10:37,586 | INFO     | aborting loop
[2025-11-28 11:11:08] 2025-11-28 18:10:37,790 | INFO     | all data control threads have been joined
[2025-11-28 11:11:08] 2025-11-28 18:10:38,590 | INFO     | [job] retrieve thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:38,591 | INFO     | [job] queue monitor thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:38,591 | INFO     | [job] job monitor thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:38,618 | INFO     | all payload control threads have been joined
[2025-11-28 11:11:08] 2025-11-28 18:10:38,795 | INFO     | [data] control thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:38,923 | INFO     | [payload] failed_post thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,106 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,134 | INFO     | all job control threads have been joined
[2025-11-28 11:11:08] 2025-11-28 18:10:39,390 | INFO     | [data] copytool_in thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,591 | INFO     | [data] copytool_out thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,623 | INFO     | [payload] control thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,995 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:39,996 | INFO     | [job] validate thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:40,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 11:11:08] 2025-11-28 18:10:40,048 | INFO     | [payload] validate_post thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:40,065 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:40,139 | INFO     | [job] control thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:44,041 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:48,282 | INFO     | job.realtimelogging is not enabled
[2025-11-28 11:11:08] 2025-11-28 18:10:49,287 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 11:11:08] 2025-11-28 18:10:55,116 | INFO     | [monitor] cgroup control has ended
[2025-11-28 11:11:08] 2025-11-28 18:10:55,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127437807642432)>', '<ExcThread(monitor, started 127437182596864)>']
[2025-11-28 11:11:08] 2025-11-28 18:11:00,905 | INFO     | all workflow threads have been joined
[2025-11-28 11:11:08] 2025-11-28 18:11:00,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 11:11:08] 2025-11-28 18:11:00,905 | INFO     | traces error code: 0
[2025-11-28 11:11:08] 2025-11-28 18:11:00,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | INFO     | PID=3315820 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | INFO     | .. there are 7 such processes running
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 11:11:08] 2025-11-28 18:11:08,555 | INFO     | [monitor] control thread has ended
[2025-11-28 11:11:08] 2025-11-28 18:11:08,610 [wrapper] ==== pilot stdout END ====
[2025-11-28 11:11:08] 2025-11-28 18:11:08,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 11:11:08] 2025-11-28 18:11:08,613 [wrapper] pilotpid: 3315820
[2025-11-28 11:11:08] 2025-11-28 18:11:08,614 [wrapper] Pilot exit status: 0
[2025-11-28 11:11:08] 2025-11-28 18:11:08,619 [wrapper] pandaids: 6900295570
[2025-11-28 11:11:08] 2025-11-28 18:11:08,640 [wrapper] cleanup supervisor_pilot 3700747 3315821
[2025-11-28 11:11:08] 2025-11-28 18:11:08,642 [wrapper] Test setup, not cleaning
[2025-11-28 11:11:08] 2025-11-28 18:11:08,643 [wrapper] apfmon messages muted
[2025-11-28 11:11:08] 2025-11-28 18:11:08,644 [wrapper] ==== wrapper stdout END ====
[2025-11-28 11:11:08] 2025-11-28 18:11:08,646 [wrapper] ==== wrapper stderr END ====
[2025-11-28 11:11:08]  *** Error codes and diagnostics ***
[2025-11-28 11:11:08]     "exeErrorCode": 0,
[2025-11-28 11:11:08]     "exeErrorDiag": "",
[2025-11-28 11:11:08]     "pilotErrorCode": 0,
[2025-11-28 11:11:08]     "pilotErrorDiag": "",
[2025-11-28 11:11:08]  *** Listing of results directory ***
[2025-11-28 11:11:08] total 1323984
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:16 pilot3.tar.gz
[2025-11-28 11:11:08] -rwx------ 1 boinc boinc     36292 Nov 27 09:20 runpilot2-wrapper.sh
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:22 queuedata.json
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc       100 Nov 28 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 11:11:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 04:23 run_atlas
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc       105 Nov 28 04:23 job.xml
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc      9949 Nov 28 04:23 init_data.xml
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc 411801859 Nov 28 04:23 EVNT.47483658._003431.pool.root.1
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:23 start_atlas.sh
[2025-11-28 11:11:08] drwxrwx--x 2 boinc boinc      4096 Nov 28 04:23 shared
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc    590105 Nov 28 04:23 input.tar.gz
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:23 boinc_lockfile
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc      2787 Nov 28 04:23 pandaJob.out
[2025-11-28 11:11:08] -rw------- 1 boinc boinc    991856 Nov 28 04:23 agis_schedconf.cvmfs.json
[2025-11-28 11:11:08] drwx------ 5 boinc boinc      4096 Nov 28 04:23 pilot3
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc       531 Nov 28 11:06 boinc_task_state.xml
[2025-11-28 11:11:08] -rw------- 1 boinc boinc 930455052 Nov 28 11:10 HITS.47556173._003878.pool.root.1
[2025-11-28 11:11:08] -rw------- 1 boinc boinc      1031 Nov 28 11:10 memory_monitor_summary.json
[2025-11-28 11:11:08] -rw------- 1 boinc boinc   1516240 Nov 28 11:10 agis_ddmendpoints.agis.ALL.json
[2025-11-28 11:11:08] -rw------- 1 boinc boinc   1243572 Nov 28 11:10 log.47556173._003878.job.log.tgz.1
[2025-11-28 11:11:08] -rw------- 1 boinc boinc      8541 Nov 28 11:10 heartbeat.json
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc      8192 Nov 28 11:11 boinc_mmap_file
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc        28 Nov 28 11:11 wrapper_checkpoint.txt
[2025-11-28 11:11:08] -rw------- 1 boinc boinc       822 Nov 28 11:11 pilotlog.txt
[2025-11-28 11:11:08] -rw------- 1 boinc boinc        95 Nov 28 11:11 pilot_heartbeat.json
[2025-11-28 11:11:08] -rw------- 1 boinc boinc   3547490 Nov 28 11:11 log.47556173._003878.job.log.1
[2025-11-28 11:11:08] -rw------- 1 boinc boinc       353 Nov 28 11:11 output.list
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc       620 Nov 28 11:11 runtime_log
[2025-11-28 11:11:08] -rw------- 1 boinc boinc   4812800 Nov 28 11:11 result.tar.gz
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc      8920 Nov 28 11:11 runtime_log.err
[2025-11-28 11:11:08] -rw------- 1 boinc boinc       660 Nov 28 11:11 Lm2NDmLuti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYsKKDm1YE5ln.diag
[2025-11-28 11:11:08] -rw-r--r-- 1 boinc boinc     21355 Nov 28 11:11 stderr.txt
[2025-11-28 11:11:08] HITS file was successfully produced:
[2025-11-28 11:11:08] -rw------- 1 boinc boinc 930455052 Nov 28 11:10 shared/HITS.pool.root.1
[2025-11-28 11:11:08]  *** Contents of shared directory: ***
[2025-11-28 11:11:08] total 1316104
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc 411801859 Nov 28 04:23 ATLAS.root_0
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:23 start_atlas.sh
[2025-11-28 11:11:08] -rw-r--r-- 2 boinc boinc    590105 Nov 28 04:23 input.tar.gz
[2025-11-28 11:11:08] -rw------- 1 boinc boinc 930455052 Nov 28 11:10 HITS.pool.root.1
[2025-11-28 11:11:08] -rw------- 1 boinc boinc   4812800 Nov 28 11:11 result.tar.gz
11:11:09 (3311964): run_atlas exited; CPU time 96796.460854
11:11:09 (3311964): called boinc_finish(0)

</stderr_txt>
]]>

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