Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:57:14 (18843): wrapper (7.7.26015): starting
05:57:14 (18843): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 05:57:14] Arguments: --nthreads 8
[2025-11-30 05:57:14] Threads: 8
[2025-11-30 05:57:14] Checking for CVMFS
[2025-11-30 05:57:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 05:57:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 05:57:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 05:57:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 05:57:16] 2.11.2.0 14339 290699 142944 153468 1 85 19906395 25165825 2554 130560 18 157573456 99.890 82769892 3605 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 05:57:16] CVMFS is ok
[2025-11-30 05:57:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 05:57:16] Checking for apptainer binary...
[2025-11-30 05:57:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 05:57:16] Running /usr/bin/apptainer --version
[2025-11-30 05:57:16] apptainer version 1.3.2-1.el7
[2025-11-30 05:57:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 05:57:24] cg-vwn496.simple-grid.lan
[2025-11-30 05:57:24] apptainer works
[2025-11-30 05:57:24] Set ATHENA_PROC_NUMBER=8
[2025-11-30 05:57:24] Set ATHENA_CORE_NUMBER=8
[2025-11-30 05:57:24] Starting ATLAS job with PandaID=6900275415
[2025-11-30 05:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 04:10:06]  *** The last 200 lines of the pilot log: ***
[2025-12-01 04:10:06] 2025-12-01 03:09:19,982 | INFO     | PID=22667 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:10:06] 2025-12-01 03:09:19,982 | INFO     | .. there are 9 such processes running
[2025-12-01 04:10:06] 2025-12-01 03:09:20,983 | INFO     | time since job start (79677s) is within the limit (172800.0s)
[2025-12-01 04:10:06] 2025-12-01 03:09:22,231 | INFO     | monitor loop #5402: job 0:6900275415 is in state 'finished'
[2025-12-01 04:10:06] 2025-12-01 03:09:22,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:10:06] 2025-12-01 03:09:22,997 | INFO     | time since job start (79679s) is within the limit (172800.0s)
[2025-12-01 04:10:06] 2025-12-01 03:09:24,739 | INFO     | monitor loop #5403: job 0:6900275415 is in state 'finished'
[2025-12-01 04:10:06] 2025-12-01 03:09:24,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:10:06] 2025-12-01 03:09:25,004 | INFO     | time since job start (79682s) is within the limit (172800.0s)
[2025-12-01 04:10:06] 2025-12-01 03:09:27,011 | INFO     | time since job start (79684s) is within the limit (172800.0s)
[2025-12-01 04:10:06] 2025-12-01 03:09:27,245 | INFO     | monitor loop #5404: job 0:6900275415 is in state 'finished'
[2025-12-01 04:10:06] 2025-12-01 03:09:27,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:10:06] 2025-12-01 03:09:29,018 | INFO     | time since job start (79686s) is within the limit (172800.0s)
[2025-12-01 04:10:06] 2025-12-01 03:09:29,749 | INFO     | monitor loop #5405: job 0:6900275415 is in state 'finished'
[2025-12-01 04:10:06] 2025-12-01 03:09:29,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:10:06] 2025-12-01 03:09:29,920 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 04:10:06] 2025-12-01 03:09:29,921 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 04:10:06] 2025-12-01 03:09:29,923 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6900275415/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 04:10:06] 2025-12-01 03:09:29,924 | INFO     | extracted standard info from prmon json
[2025-12-01 04:10:06] 2025-12-01 03:09:29,924 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 04:10:06] 2025-12-01 03:09:29,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 04:10:06] 2025-12-01 03:09:29,946 | INFO     | fitting pss+swap vs Time
[2025-12-01 04:10:06] 2025-12-01 03:09:29,948 | INFO     | sum of square deviations: 676546096566.3313
[2025-12-01 04:10:06] 2025-12-01 03:09:29,996 | INFO     | sum of deviations: 2488023517399.625
[2025-12-01 04:10:06] 2025-12-01 03:09:29,997 | INFO     | mean x: 1764518884.071704
[2025-12-01 04:10:06] 2025-12-01 03:09:29,997 | INFO     | mean y: 2847832.8427139553
[2025-12-01 04:10:06] 2025-12-01 03:09:29,997 | INFO     | intersect: -6486236211.463367
[2025-12-01 04:10:06] 2025-12-01 03:09:29,998 | INFO     | chi2: 21.036517990218677
[2025-12-01 04:10:06] 2025-12-01 03:09:30,000 | INFO     | sum of square deviations: 668752272045.5803
[2025-12-01 04:10:06] 2025-12-01 03:09:30,064 | INFO     | sum of deviations: 2935085085489.4727
[2025-12-01 04:10:06] 2025-12-01 03:09:30,065 | INFO     | mean x: 1764518731.5758514
[2025-12-01 04:10:06] 2025-12-01 03:09:30,065 | INFO     | mean y: 2856579.5665634675
[2025-12-01 04:10:06] 2025-12-01 03:09:30,065 | INFO     | intersect: -7741435034.237622
[2025-12-01 04:10:06] 2025-12-01 03:09:30,066 | INFO     | chi2: 17.6092242554372
[2025-12-01 04:10:06] 2025-12-01 03:09:30,066 | INFO     | current chi2=17.6092242554372 (change=16.29211515125773 %)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,066 | INFO     | right removable region: 1291
[2025-12-01 04:10:06] 2025-12-01 03:09:30,068 | INFO     | sum of square deviations: 668751424145.581
[2025-12-01 04:10:06] 2025-12-01 03:09:30,140 | INFO     | sum of deviations: 1950622243210.5637
[2025-12-01 04:10:06] 2025-12-01 03:09:30,140 | INFO     | mean x: 1764519036.5758514
[2025-12-01 04:10:06] 2025-12-01 03:09:30,140 | INFO     | mean y: 2858346.101393189
[2025-12-01 04:10:06] 2025-12-01 03:09:30,140 | INFO     | intersect: -5143912123.525388
[2025-12-01 04:10:06] 2025-12-01 03:09:30,142 | INFO     | chi2: 16.468255902828247
[2025-12-01 04:10:06] 2025-12-01 03:09:30,142 | INFO     | current chi2=16.468255902828247 (change=21.715866140558663 %)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,142 | INFO     | left removable region: 10
[2025-12-01 04:10:06] 2025-12-01 03:09:30,144 | INFO     | sum of square deviations: 651815366259.7249
[2025-12-01 04:10:06] 2025-12-01 03:09:30,204 | INFO     | sum of deviations: 2029178560246.1165
[2025-12-01 04:10:06] 2025-12-01 03:09:30,204 | INFO     | mean x: 1764519006.0850897
[2025-12-01 04:10:06] 2025-12-01 03:09:30,204 | INFO     | mean y: 2878562.576893052
[2025-12-01 04:10:06] 2025-12-01 03:09:30,205 | INFO     | intersect: -5490278428.858534
[2025-12-01 04:10:06] 2025-12-01 03:09:30,206 | INFO     | chi2: 8.699896991460022
[2025-12-01 04:10:06] 2025-12-01 03:09:30,206 | INFO     | current memory leak: 3.11 B/s (using 1281 data points, chi2=8.70)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,207 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | ..............................
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . Timing measurements:
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . get job = 0 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . initial setup = 4 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . payload setup = 126 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . stage-in = 0 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . payload execution = 79268 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . stage-out = 5 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | . log creation = 2 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,208 | INFO     | ..............................
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | 
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | job summary report
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | --------------------------------------------------
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | PanDA job id: 6900275415
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | task id: 47556173
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | errors: (none)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 04:10:06] 2025-12-01 03:09:30,769 | INFO     | pilot state: finished 
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | transexitcode: 0
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | exeerrorcode: 0
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | exeerrordiag: 
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | exitcode: 0
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | exitmsg: OK
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | cpuconsumptiontime: 297014 s
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | nevents: 1000
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | neventsw: 0
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | pid: 29259
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | pgrp: 29259
[2025-12-01 04:10:06] 2025-12-01 03:09:30,770 | INFO     | corecount: 8
[2025-12-01 04:10:06] 2025-12-01 03:09:30,771 | INFO     | event service: False
[2025-12-01 04:10:06] 2025-12-01 03:09:30,771 | INFO     | sizes: {0: 2283488, 1: 2284174, 2: 2284373, 3: 2284373, 13: 2284401, 24: 2284457, 35: 2284613, 46: 2284641, 56: 2284669, 67: 2284697, 78: 2284725, 88: 2285061, 92:
[2025-12-01 04:10:06] 2025-12-01 03:09:30,771 | INFO     | --------------------------------------------------
[2025-12-01 04:10:06] 2025-12-01 03:09:30,771 | INFO     | 
[2025-12-01 04:10:06] 2025-12-01 03:09:30,771 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-01 04:10:06] 2025-12-01 03:09:30,986 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | job 6900275415 has completed (purged errors)
[2025-12-01 04:10:06] 2025-12-01 03:09:30,988 | INFO     | overall cleanup function is called
[2025-12-01 04:10:06] 2025-12-01 03:09:32,004 | INFO     | --- collectZombieJob: --- 10, [29259]
[2025-12-01 04:10:06] 2025-12-01 03:09:32,004 | INFO     | zombie collector waiting for pid 29259
[2025-12-01 04:10:06] 2025-12-01 03:09:32,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 04:10:06] 2025-12-01 03:09:32,004 | INFO     | collected zombie processes
[2025-12-01 04:10:06] 2025-12-01 03:09:32,004 | INFO     | will attempt to kill all subprocesses of pid=29259
[2025-12-01 04:10:06] 2025-12-01 03:09:32,112 | INFO     | process IDs to be killed: [29259] (in reverse order)
[2025-12-01 04:10:06] 2025-12-01 03:09:32,184 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 04:10:06] 2025-12-01 03:09:32,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 04:10:06] 2025-12-01 03:09:32,188 | INFO     | did not find any defunct processes belonging to 29259
[2025-12-01 04:10:06] 2025-12-01 03:09:32,191 | INFO     | did not find any defunct processes belonging to 29259
[2025-12-01 04:10:06] 2025-12-01 03:09:32,193 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:10:06] 2025-12-01 03:09:32,193 | INFO     | ready for new job
[2025-12-01 04:10:06] 2025-12-01 03:09:32,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 04:10:06] 2025-12-01 03:09:32,198 | INFO     | ***************************************
[2025-12-01 04:10:06] 2025-12-01 03:09:32,198 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 04:10:06] 2025-12-01 03:09:32,198 | INFO     | ***************************************
[2025-12-01 04:10:06] 2025-12-01 03:09:32,198 | INFO     | 
[2025-12-01 04:10:06] 2025-12-01 03:09:32,199 | INFO     | pilot is running in a VM
[2025-12-01 04:10:06] 2025-12-01 03:09:32,199 | INFO     | architecture information:
[2025-12-01 04:10:06] 2025-12-01 03:09:32,199 | INFO     | executing command: cat /etc/os-release
[2025-12-01 04:10:06] 2025-12-01 03:09:32,216 | INFO     | cat /etc/os-release:
[2025-12-01 04:10:06] NAME="CentOS Linux"
[2025-12-01 04:10:06] VERSION="7 (Core)"
[2025-12-01 04:10:06] ID="centos"
[2025-12-01 04:10:06] ID_LIKE="rhel fedora"
[2025-12-01 04:10:06] VERSION_ID="7"
[2025-12-01 04:10:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 04:10:06] ANSI_COLOR="0;31"
[2025-12-01 04:10:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 04:10:06] HOME_URL="https://www.centos.org/"
[2025-12-01 04:10:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 04:10:06] 
[2025-12-01 04:10:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 04:10:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 04:10:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 04:10:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 04:10:06] 
[2025-12-01 04:10:06] 2025-12-01 03:09:32,217 | INFO     | ***************************************
[2025-12-01 04:10:06] 2025-12-01 03:09:32,720 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-01 04:10:06] 2025-12-01 03:09:32,959 | INFO     | sufficient remaining disk space (488939454464 B)
[2025-12-01 04:10:06] 2025-12-01 03:09:32,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 04:10:06] 2025-12-01 03:09:32,959 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 04:10:06] 2025-12-01 03:09:32,960 | INFO     | update_server=False
[2025-12-01 04:10:06] 2025-12-01 03:09:32,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 04:10:06] 2025-12-01 03:09:33,132 | INFO     | all payload control threads have been joined
[2025-12-01 04:10:06] 2025-12-01 03:09:33,211 | INFO     | all data control threads have been joined
[2025-12-01 04:10:06] 2025-12-01 03:09:33,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:10:06] 2025-12-01 03:09:33,259 | INFO     | aborting loop
[2025-12-01 04:10:06] 2025-12-01 03:09:33,485 | INFO     | all job control threads have been joined
[2025-12-01 04:10:06] 2025-12-01 03:09:33,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 04:10:06] 2025-12-01 03:09:33,966 | INFO     | [job] retrieve thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:33,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 04:10:06] 2025-12-01 03:09:33,973 | INFO     | [payload] validate_post thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,007 | INFO     | [payload] failed_post thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,138 | INFO     | [payload] control thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,179 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,217 | INFO     | [data] control thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,265 | INFO     | [job] job monitor thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,367 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,491 | INFO     | [job] control thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,510 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:34,993 | INFO     | [data] copytool_in thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:35,099 | INFO     | [job] validate thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:35,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:35,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:10:06] 2025-12-01 03:09:35,566 | INFO     | [data] copytool_out thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:36,337 | INFO     | [job] queue monitor thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:37,979 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 04:10:06] 2025-12-01 03:09:41,222 | INFO     | [monitor] cgroup control has ended
[2025-12-01 04:10:06] 2025-12-01 03:09:41,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170564708160)>', '<ExcThread(monitor, started 140170133231360)>']
[2025-12-01 04:10:06] 2025-12-01 03:09:46,488 | INFO     | all workflow threads have been joined
[2025-12-01 04:10:06] 2025-12-01 03:09:46,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 04:10:06] 2025-12-01 03:09:46,488 | INFO     | traces error code: 0
[2025-12-01 04:10:06] 2025-12-01 03:09:46,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 04:10:06] 2025-12-01 03:10:02,200 | INFO     | PID=22667 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:10:06] 2025-12-01 03:10:02,200 | INFO     | .. there are 9 such processes running
[2025-12-01 04:10:06] 2025-12-01 03:10:02,201 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 04:10:06] 2025-12-01 03:10:02,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 04:10:06] 2025-12-01 03:10:02,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 04:10:06] 2025-12-01 03:10:02,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 04:10:06] 2025-12-01 03:10:02,202 | CRITICAL | thread 'MainThread' is not alive
[2025-12-01 04:10:06] 2025-12-01 03:10:02,202 | INFO     | [monitor] control thread has ended
[2025-12-01 04:10:06] 2025-12-01 03:10:02,529 [wrapper] ==== pilot stdout END ====
[2025-12-01 04:10:06] 2025-12-01 03:10:02,621 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 04:10:06] 2025-12-01 03:10:02,706 [wrapper] pilotpid: 22667
[2025-12-01 04:10:06] 2025-12-01 03:10:02,772 [wrapper] Pilot exit status: 0
[2025-12-01 04:10:06] 2025-12-01 03:10:03,152 [wrapper] pandaids: 6900275415
[2025-12-01 04:10:06] 2025-12-01 03:10:04,295 [wrapper] cleanup supervisor_pilot 21955 22668
[2025-12-01 04:10:06] 2025-12-01 03:10:04,406 [wrapper] Test setup, not cleaning
[2025-12-01 04:10:06] 2025-12-01 03:10:04,503 [wrapper] apfmon messages muted
[2025-12-01 04:10:06] 2025-12-01 03:10:04,618 [wrapper] ==== wrapper stdout END ====
[2025-12-01 04:10:06] 2025-12-01 03:10:04,719 [wrapper] ==== wrapper stderr END ====
[2025-12-01 04:10:06]  *** Error codes and diagnostics ***
[2025-12-01 04:10:06]     "exeErrorCode": 0,
[2025-12-01 04:10:06]     "exeErrorDiag": "",
[2025-12-01 04:10:06]     "pilotErrorCode": 0,
[2025-12-01 04:10:06]     "pilotErrorDiag": "",
[2025-12-01 04:10:06]  *** Listing of results directory ***
[2025-12-01 04:10:06] total 1337276
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-01 04:10:06] -rwx------. 1 boinc boinc     36292 Nov 27 17:17 runpilot2-wrapper.sh
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:18 queuedata.json
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc       100 Nov 30 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 04:10:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 05:57 run_atlas
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc       105 Nov 30 05:57 job.xml
[2025-12-01 04:10:06] -rw-r--r--. 2 boinc boinc 409924655 Nov 30 05:57 EVNT.47483658._003428.pool.root.1
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc      6393 Nov 30 05:57 init_data.xml
[2025-12-01 04:10:06] -rw-r--r--. 2 boinc boinc     15847 Nov 30 05:57 start_atlas.sh
[2025-12-01 04:10:06] drwxrwx--x. 2 boinc boinc        68 Nov 30 05:57 shared
[2025-12-01 04:10:06] -rw-r--r--. 2 boinc boinc    590106 Nov 30 05:57 input.tar.gz
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc         0 Nov 30 05:57 boinc_lockfile
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc      2787 Nov 30 05:57 pandaJob.out
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc    991196 Nov 30 06:01 agis_schedconf.cvmfs.json
[2025-12-01 04:10:06] drwx------. 5 boinc boinc      4096 Nov 30 06:01 pilot3
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc       533 Dec  1 03:44 boinc_task_state.xml
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc 929386934 Dec  1 04:06 HITS.47556173._003845.pool.root.1
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc      1032 Dec  1 04:07 memory_monitor_summary.json
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc   1516240 Dec  1 04:07 agis_ddmendpoints.agis.ALL.json
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc   2400907 Dec  1 04:07 log.47556173._003845.job.log.tgz.1
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc      8622 Dec  1 04:09 heartbeat.json
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc        29 Dec  1 04:09 wrapper_checkpoint.txt
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc      8192 Dec  1 04:09 boinc_mmap_file
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc        95 Dec  1 04:10 pilot_heartbeat.json
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc       890 Dec  1 04:10 pilotlog.txt
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc  10674703 Dec  1 04:10 log.47556173._003845.job.log.1
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc       353 Dec  1 04:10 output.list
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc       620 Dec  1 04:10 runtime_log
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc  13096960 Dec  1 04:10 result.tar.gz
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc      8833 Dec  1 04:10 runtime_log.err
[2025-12-01 04:10:06] -rw-------. 1 boinc boinc       662 Dec  1 04:10 QkMLDmQrti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkvNKDmOKZt2n.diag
[2025-12-01 04:10:06] -rw-r--r--. 1 boinc boinc     21475 Dec  1 04:10 stderr.txt
[2025-12-01 04:10:06] HITS file was successfully produced:
[2025-12-01 04:10:07] -rw-------. 1 boinc boinc 929386934 Dec  1 04:06 shared/HITS.pool.root.1
[2025-12-01 04:10:07]  *** Contents of shared directory: ***
[2025-12-01 04:10:07] total 1321316
[2025-12-01 04:10:07] -rw-r--r--. 2 boinc boinc 409924655 Nov 30 05:57 ATLAS.root_0
[2025-12-01 04:10:07] -rw-r--r--. 2 boinc boinc     15847 Nov 30 05:57 start_atlas.sh
[2025-12-01 04:10:07] -rw-r--r--. 2 boinc boinc    590106 Nov 30 05:57 input.tar.gz
[2025-12-01 04:10:07] -rw-------. 1 boinc boinc 929386934 Dec  1 04:06 HITS.pool.root.1
[2025-12-01 04:10:07] -rw-------. 1 boinc boinc  13096960 Dec  1 04:10 result.tar.gz
04:10:08 (18843): run_atlas exited; CPU time 297525.036565
04:10:08 (18843): called boinc_finish(0)

</stderr_txt>
]]>

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