Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:02:17 (27278): wrapper (7.7.26015): starting
09:02:17 (27278): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 09:02:17] Arguments: --nthreads 8
[2025-11-30 09:02:17] Threads: 8
[2025-11-30 09:02:17] Checking for CVMFS
[2025-11-30 09:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 09:02:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 09:02:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 09:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 09:02:20] 2.11.2.0 4058 290836 139160 153473 2 85 18839457 25165825 2504 130560 8 148292465 99.880 86917729 3007 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 09:02:20] CVMFS is ok
[2025-11-30 09:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 09:02:20] Checking for apptainer binary...
[2025-11-30 09:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 09:02:20] Running /usr/bin/apptainer --version
[2025-11-30 09:02:20] apptainer version 1.3.2-1.el7
[2025-11-30 09:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 09:02:33] cg-vwn233.simple-grid.lan
[2025-11-30 09:02:33] apptainer works
[2025-11-30 09:02:33] Set ATHENA_PROC_NUMBER=8
[2025-11-30 09:02:33] Set ATHENA_CORE_NUMBER=8
[2025-11-30 09:02:33] Starting ATLAS job with PandaID=6894261705
[2025-11-30 09:02:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 09:23:44]  *** The last 200 lines of the pilot log: ***
[2025-12-01 09:23:44] 2025-12-01 08:22:51,106 | INFO     | time since job start (87409s) is within the limit (172800.0s)
[2025-12-01 09:23:44] 2025-12-01 08:22:52,343 | INFO     | PID=31111 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 09:23:44] 2025-12-01 08:22:52,343 | INFO     | .. there are 9 such processes running
[2025-12-01 09:23:44] 2025-12-01 08:22:52,639 | INFO     | monitor loop #5872: job 0:6894261705 is in state 'finished'
[2025-12-01 09:23:44] 2025-12-01 08:22:52,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 09:23:44] 2025-12-01 08:22:53,345 | INFO     | time since job start (87411s) is within the limit (172800.0s)
[2025-12-01 09:23:44] 2025-12-01 08:22:55,149 | INFO     | monitor loop #5873: job 0:6894261705 is in state 'finished'
[2025-12-01 09:23:44] 2025-12-01 08:22:55,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 09:23:44] 2025-12-01 08:22:55,352 | INFO     | time since job start (87413s) is within the limit (172800.0s)
[2025-12-01 09:23:44] 2025-12-01 08:22:57,361 | INFO     | time since job start (87415s) is within the limit (172800.0s)
[2025-12-01 09:23:44] 2025-12-01 08:22:57,658 | INFO     | monitor loop #5874: job 0:6894261705 is in state 'finished'
[2025-12-01 09:23:44] 2025-12-01 08:22:57,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 09:23:44] 2025-12-01 08:22:59,369 | INFO     | time since job start (87417s) is within the limit (172800.0s)
[2025-12-01 09:23:44] 2025-12-01 08:22:59,369 | INFO     | 87421s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-01 09:23:44] 2025-12-01 08:22:59,874 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 09:23:44] 2025-12-01 08:22:59,875 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 09:23:44] 2025-12-01 08:22:59,877 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6894261705/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 09:23:44] 2025-12-01 08:22:59,877 | INFO     | extracted standard info from prmon json
[2025-12-01 09:23:44] 2025-12-01 08:22:59,877 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 09:23:44] 2025-12-01 08:22:59,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 09:23:44] 2025-12-01 08:22:59,904 | INFO     | fitting pss+swap vs Time
[2025-12-01 09:23:44] 2025-12-01 08:22:59,906 | INFO     | sum of square deviations: 902948387518.1735
[2025-12-01 09:23:44] 2025-12-01 08:22:59,969 | INFO     | sum of deviations: 2260032868382.1025
[2025-12-01 09:23:44] 2025-12-01 08:22:59,969 | INFO     | mean x: 1764533639.6085434
[2025-12-01 09:23:44] 2025-12-01 08:22:59,969 | INFO     | mean y: 2861440.531512605
[2025-12-01 09:23:44] 2025-12-01 08:22:59,970 | INFO     | intersect: -4413674518.785369
[2025-12-01 09:23:44] 2025-12-01 08:22:59,971 | INFO     | chi2: 16.09737014230292
[2025-12-01 09:23:44] 2025-12-01 08:22:59,973 | INFO     | sum of square deviations: 893497288462.0103
[2025-12-01 09:23:44] 2025-12-01 08:23:00,038 | INFO     | sum of deviations: 2748991246010.1606
[2025-12-01 09:23:44] 2025-12-01 08:23:00,038 | INFO     | mean x: 1764533487.1124384
[2025-12-01 09:23:44] 2025-12-01 08:23:00,039 | INFO     | mean y: 2869328.5614898102
[2025-12-01 09:23:44] 2025-12-01 08:23:00,039 | INFO     | intersect: -5426007929.380091
[2025-12-01 09:23:44] 2025-12-01 08:23:00,041 | INFO     | chi2: 12.684916932006717
[2025-12-01 09:23:44] 2025-12-01 08:23:00,041 | INFO     | current chi2=12.684916932006717 (change=21.198824280796543 %)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,041 | INFO     | right removable region: 1422
[2025-12-01 09:23:44] 2025-12-01 08:23:00,043 | INFO     | sum of square deviations: 893496322832.0096
[2025-12-01 09:23:44] 2025-12-01 08:23:00,120 | INFO     | sum of deviations: 1814024407469.9243
[2025-12-01 09:23:44] 2025-12-01 08:23:00,120 | INFO     | mean x: 1764533792.1124384
[2025-12-01 09:23:44] 2025-12-01 08:23:00,120 | INFO     | mean y: 2868632.7442023894
[2025-12-01 09:23:44] 2025-12-01 08:23:00,121 | INFO     | intersect: -3579583006.846084
[2025-12-01 09:23:44] 2025-12-01 08:23:00,122 | INFO     | chi2: 13.488059252124467
[2025-12-01 09:23:44] 2025-12-01 08:23:00,123 | INFO     | current chi2=13.488059252124467 (change=16.209547690782994 %)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,123 | INFO     | left removable region: 10
[2025-12-01 09:23:44] 2025-12-01 08:23:00,125 | INFO     | sum of square deviations: 872936023273.4849
[2025-12-01 09:23:44] 2025-12-01 08:23:00,178 | INFO     | monitor loop #5875: job 0:6894261705 is in state 'finished'
[2025-12-01 09:23:44] 2025-12-01 08:23:00,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,191 | INFO     | sum of deviations: 2292949051110.907
[2025-12-01 09:23:44] 2025-12-01 08:23:00,191 | INFO     | mean x: 1764533761.6175637
[2025-12-01 09:23:44] 2025-12-01 08:23:00,191 | INFO     | mean y: 2880050.5276203966
[2025-12-01 09:23:44] 2025-12-01 08:23:00,191 | INFO     | intersect: -4632036949.668822
[2025-12-01 09:23:44] 2025-12-01 08:23:00,193 | INFO     | chi2: 9.249533740476993
[2025-12-01 09:23:44] 2025-12-01 08:23:00,193 | INFO     | current memory leak: 2.63 B/s (using 1412 data points, chi2=9.25)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | ..............................
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | . Timing measurements:
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | . get job = 0 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | . initial setup = 4 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,195 | INFO     | . payload setup = 21 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,196 | INFO     | . stage-in = 0 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,196 | INFO     | . payload execution = 87089 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,196 | INFO     | . stage-out = 5 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,196 | INFO     | . log creation = 2 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,196 | INFO     | ..............................
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | 
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | job summary report
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | --------------------------------------------------
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | PanDA job id: 6894261705
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | task id: 47533962
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | errors: (none)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | pilot state: finished 
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | transexitcode: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | exeerrorcode: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | exeerrordiag: 
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | exitcode: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | exitmsg: OK
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | cpuconsumptiontime: 328716 s
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | nevents: 1000
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | neventsw: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | pid: 5253
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | pgrp: 5253
[2025-12-01 09:23:44] 2025-12-01 08:23:00,314 | INFO     | corecount: 8
[2025-12-01 09:23:44] 2025-12-01 08:23:00,315 | INFO     | event service: False
[2025-12-01 09:23:44] 2025-12-01 08:23:00,315 | INFO     | sizes: {0: 2284308, 1: 2284308, 12: 2284336, 22: 2284364, 33: 2284392, 44: 2284448, 54: 2284604, 65: 2284632, 73: 2284922, 76: 2284950, 87115: 2348037, 87121: 2357
[2025-12-01 09:23:44] 2025-12-01 08:23:00,315 | INFO     | --------------------------------------------------
[2025-12-01 09:23:44] 2025-12-01 08:23:00,315 | INFO     | 
[2025-12-01 09:23:44] 2025-12-01 08:23:00,315 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-12-01 09:23:44] 2025-12-01 08:23:00,899 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,899 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,899 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 09:23:44] 2025-12-01 08:23:00,901 | INFO     | job 6894261705 has completed (purged errors)
[2025-12-01 09:23:44] 2025-12-01 08:23:00,901 | INFO     | overall cleanup function is called
[2025-12-01 09:23:44] 2025-12-01 08:23:01,919 | INFO     | --- collectZombieJob: --- 10, [5253]
[2025-12-01 09:23:44] 2025-12-01 08:23:01,920 | INFO     | zombie collector waiting for pid 5253
[2025-12-01 09:23:44] 2025-12-01 08:23:01,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 09:23:44] 2025-12-01 08:23:01,920 | INFO     | collected zombie processes
[2025-12-01 09:23:44] 2025-12-01 08:23:01,920 | INFO     | will attempt to kill all subprocesses of pid=5253
[2025-12-01 09:23:44] 2025-12-01 08:23:02,076 | INFO     | process IDs to be killed: [5253] (in reverse order)
[2025-12-01 09:23:44] 2025-12-01 08:23:02,574 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 09:23:44] 2025-12-01 08:23:02,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 09:23:44] 2025-12-01 08:23:02,578 | INFO     | did not find any defunct processes belonging to 5253
[2025-12-01 09:23:44] 2025-12-01 08:23:02,580 | INFO     | did not find any defunct processes belonging to 5253
[2025-12-01 09:23:44] 2025-12-01 08:23:02,642 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 09:23:44] 2025-12-01 08:23:02,642 | INFO     | ready for new job
[2025-12-01 09:23:44] 2025-12-01 08:23:02,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 09:23:44] 2025-12-01 08:23:02,648 | INFO     | ***************************************
[2025-12-01 09:23:44] 2025-12-01 08:23:02,648 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 09:23:44] 2025-12-01 08:23:02,648 | INFO     | ***************************************
[2025-12-01 09:23:44] 2025-12-01 08:23:02,648 | INFO     | 
[2025-12-01 09:23:44] 2025-12-01 08:23:02,648 | INFO     | pilot is running in a VM
[2025-12-01 09:23:44] 2025-12-01 08:23:02,649 | INFO     | architecture information:
[2025-12-01 09:23:44] 2025-12-01 08:23:02,664 | INFO     | executing command: cat /etc/os-release
[2025-12-01 09:23:44] 2025-12-01 08:23:02,910 | INFO     | cat /etc/os-release:
[2025-12-01 09:23:44] NAME="CentOS Linux"
[2025-12-01 09:23:44] VERSION="7 (Core)"
[2025-12-01 09:23:44] ID="centos"
[2025-12-01 09:23:44] ID_LIKE="rhel fedora"
[2025-12-01 09:23:44] VERSION_ID="7"
[2025-12-01 09:23:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 09:23:44] ANSI_COLOR="0;31"
[2025-12-01 09:23:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 09:23:44] HOME_URL="https://www.centos.org/"
[2025-12-01 09:23:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 09:23:44] 
[2025-12-01 09:23:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 09:23:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 09:23:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 09:23:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 09:23:44] 
[2025-12-01 09:23:44] 2025-12-01 08:23:02,910 | INFO     | ***************************************
[2025-12-01 09:23:44] 2025-12-01 08:23:03,414 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-12-01 09:23:44] 2025-12-01 08:23:03,540 | INFO     | sufficient remaining disk space (488305065984 B)
[2025-12-01 09:23:44] 2025-12-01 08:23:03,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 09:23:44] 2025-12-01 08:23:03,541 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 09:23:44] 2025-12-01 08:23:03,541 | INFO     | update_server=False
[2025-12-01 09:23:44] 2025-12-01 08:23:03,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 09:23:44] 2025-12-01 08:23:03,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 09:23:44] 2025-12-01 08:23:03,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 09:23:44] 2025-12-01 08:23:03,698 | INFO     | aborting loop
[2025-12-01 09:23:44] 2025-12-01 08:23:04,130 | INFO     | all payload control threads have been joined
[2025-12-01 09:23:44] 2025-12-01 08:23:04,502 | INFO     | all data control threads have been joined
[2025-12-01 09:23:44] 2025-12-01 08:23:04,547 | INFO     | [job] retrieve thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:04,704 | INFO     | [job] job monitor thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:04,725 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:04,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:04,874 | INFO     | all job control threads have been joined
[2025-12-01 09:23:44] 2025-12-01 08:23:04,999 | INFO     | [job] validate thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,074 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,137 | INFO     | [payload] control thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,181 | INFO     | [payload] failed_post thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 09:23:44] 2025-12-01 08:23:05,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 09:23:44] 2025-12-01 08:23:05,465 | INFO     | [data] copytool_in thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,508 | INFO     | [data] control thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,535 | INFO     | [payload] validate_post thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,549 | INFO     | [data] copytool_out thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,880 | INFO     | [job] control thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:05,986 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:06,333 | INFO     | [job] queue monitor thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:09,245 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 09:23:44] 2025-12-01 08:23:32,568 | INFO     | PID=31111 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 09:23:44] 2025-12-01 08:23:32,568 | INFO     | .. there are 9 such processes running
[2025-12-01 09:23:44] 2025-12-01 08:23:32,569 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 09:23:44] 2025-12-01 08:23:32,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 09:23:44] 2025-12-01 08:23:32,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 09:23:44] 2025-12-01 08:23:34,708 | INFO     | [monitor] cgroup control has ended
[2025-12-01 09:23:44] 2025-12-01 08:23:36,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694016530240)>', '<ExcThread(monitor, started 139693207320320)>']
[2025-12-01 09:23:44] 2025-12-01 08:23:36,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 09:23:44] 2025-12-01 08:23:36,594 | INFO     | [monitor] control thread has ended
[2025-12-01 09:23:44] 2025-12-01 08:23:41,428 | INFO     | all workflow threads have been joined
[2025-12-01 09:23:44] 2025-12-01 08:23:41,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 09:23:44] 2025-12-01 08:23:41,429 | INFO     | traces error code: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:41,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 09:23:44] 2025-12-01 08:23:41,608 [wrapper] ==== pilot stdout END ====
[2025-12-01 09:23:44] 2025-12-01 08:23:41,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 09:23:44] 2025-12-01 08:23:41,629 [wrapper] pilotpid: 31111
[2025-12-01 09:23:44] 2025-12-01 08:23:41,644 [wrapper] Pilot exit status: 0
[2025-12-01 09:23:44] 2025-12-01 08:23:41,836 [wrapper] pandaids: 6894261705
[2025-12-01 09:23:44] 2025-12-01 08:23:41,909 [wrapper] cleanup supervisor_pilot 12354 31112
[2025-12-01 09:23:44] 2025-12-01 08:23:41,962 [wrapper] Test setup, not cleaning
[2025-12-01 09:23:44] 2025-12-01 08:23:42,034 [wrapper] apfmon messages muted
[2025-12-01 09:23:44] 2025-12-01 08:23:42,116 [wrapper] ==== wrapper stdout END ====
[2025-12-01 09:23:44] 2025-12-01 08:23:42,235 [wrapper] ==== wrapper stderr END ====
[2025-12-01 09:23:44]  *** Error codes and diagnostics ***
[2025-12-01 09:23:44]     "exeErrorCode": 0,
[2025-12-01 09:23:44]     "exeErrorDiag": "",
[2025-12-01 09:23:44]     "pilotErrorCode": 0,
[2025-12-01 09:23:44]     "pilotErrorDiag": "",
[2025-12-01 09:23:44]  *** Listing of results directory ***
[2025-12-01 09:23:44] total 1346524
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:16 queuedata.json
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-01 09:23:44] -rwx------. 1 boinc boinc     36292 Nov 27 17:16 runpilot2-wrapper.sh
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc       100 Nov 30 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 09:23:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 09:02 run_atlas
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc       105 Nov 30 09:02 job.xml
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc 412636560 Nov 30 09:02 EVNT.47493127._001077.pool.root.1
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc    590108 Nov 30 09:02 input.tar.gz
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc      6392 Nov 30 09:02 init_data.xml
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc     15847 Nov 30 09:02 start_atlas.sh
[2025-12-01 09:23:44] drwxrwx--x. 2 boinc boinc        68 Nov 30 09:02 shared
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc         0 Nov 30 09:02 boinc_lockfile
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc      2783 Nov 30 09:02 pandaJob.out
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc    991772 Nov 30 09:05 agis_schedconf.cvmfs.json
[2025-12-01 09:23:44] drwx------. 5 boinc boinc      4096 Nov 30 09:06 pilot3
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc       533 Dec  1 08:54 boinc_task_state.xml
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc 934006211 Dec  1 09:18 HITS.47533962._000761.pool.root.1
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc      1032 Dec  1 09:19 memory_monitor_summary.json
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc   1516240 Dec  1 09:19 agis_ddmendpoints.agis.ALL.json
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc   2497037 Dec  1 09:19 log.47533962._000761.job.log.tgz.1
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc        95 Dec  1 09:22 pilot_heartbeat.json
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc      8622 Dec  1 09:23 heartbeat.json
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc        29 Dec  1 09:23 wrapper_checkpoint.txt
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc      8192 Dec  1 09:23 boinc_mmap_file
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc      4884 Dec  1 09:23 pilotlog.txt
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc  11649601 Dec  1 09:23 log.47533962._000761.job.log.1
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc       353 Dec  1 09:23 output.list
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc       620 Dec  1 09:23 runtime_log
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc  14161920 Dec  1 09:23 result.tar.gz
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc      8817 Dec  1 09:23 runtime_log.err
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc       662 Dec  1 09:23 Nw7MDmOqti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAvNKDmVd9Mrn.diag
[2025-12-01 09:23:44] -rw-r--r--. 1 boinc boinc     21513 Dec  1 09:23 stderr.txt
[2025-12-01 09:23:44] HITS file was successfully produced:
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc 934006211 Dec  1 09:18 shared/HITS.pool.root.1
[2025-12-01 09:23:44]  *** Contents of shared directory: ***
[2025-12-01 09:23:44] total 1329512
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc 412636560 Nov 30 09:02 ATLAS.root_0
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc    590108 Nov 30 09:02 input.tar.gz
[2025-12-01 09:23:44] -rw-r--r--. 2 boinc boinc     15847 Nov 30 09:02 start_atlas.sh
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc 934006211 Dec  1 09:18 HITS.pool.root.1
[2025-12-01 09:23:44] -rw-------. 1 boinc boinc  14161920 Dec  1 09:23 result.tar.gz
09:23:46 (27278): run_atlas exited; CPU time 329374.385497
09:23:46 (27278): called boinc_finish(0)

</stderr_txt>
]]>

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