Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:35 (3359806): wrapper (7.7.26015): starting
01:27:36 (3359806): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 01:27:36] Arguments: --nthreads 12
[2025-11-28 01:27:36] Threads: 12
[2025-11-28 01:27:36] Checking for CVMFS
[2025-11-28 01:27:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:27:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:27:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:27:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:27:37] 2.11.5.0 2639569 31046 226864 153404 3 414 36780893 45568000 18323 130560 0 290973181 99.801 166169996 30108 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-28 01:27:37] CVMFS is ok
[2025-11-28 01:27:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:27:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 01:27:37] Further information can be found at the LHC@home message board.
[2025-11-28 01:27:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:27:37] Checking for apptainer binary...
[2025-11-28 01:27:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:27:37] Running /usr/bin/apptainer --version
[2025-11-28 01:27:37] apptainer version 1.4.1-1.el9
[2025-11-28 01:27:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:27:38] wns0026.triumf.lcg
[2025-11-28 01:27:38] apptainer works
[2025-11-28 01:27:38] Set ATHENA_PROC_NUMBER=12
[2025-11-28 01:27:38] Set ATHENA_CORE_NUMBER=12
[2025-11-28 01:27:39] Starting ATLAS job with PandaID=6900219937
[2025-11-28 01:27:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:33:29]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | WARNING  | wrong length of table data, x=[1764322161.0, 1764322222.0], y=[1901.0, 709229.0] (must be same and length>=4)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | could have reported an average CPU frequency of 2585 MHz (4 samples)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | . Timing measurements:
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . get job = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . initial setup = 3 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload setup = 18 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-in = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload execution = 85 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-out = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | . log creation = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900219937/pilotlog.txt
[2025-11-28 01:33:29] 2025-11-28 09:32:55,561 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-28 01:33:29] - Log from pilotlog.txt -
[2025-11-28 01:33:29] 2025-11-28 09:32:55,467 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6900219937/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | INFO     | extracted standard info from prmon json
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | WARNING  | wrong length of table data, x=[1764322161.0, 1764322222.0], y=[1901.0, 709229.0] (must be same and length>=4)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | could have reported an average CPU frequency of 2585 MHz (4 samples)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | . Timing measurements:
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . get job = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . initial setup = 3 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload setup = 18 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-in = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload execution = 85 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-out = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | . log creation = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900219937/pilotlog.txt
[2025-11-28 01:33:29] 2025-11-28 09:32:55,562 | WARNING  | 
[2025-11-28 01:33:29] [begin log extracts]
[2025-11-28 01:33:29] - Log from pilotlog.txt -
[2025-11-28 01:33:29] 2025-11-28 09:32:55,467 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6900219937/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | INFO     | extracted standard info from prmon json
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-28 01:33:29] 2025-11-28 09:32:55,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | WARNING  | wrong length of table data, x=[1764322161.0, 1764322222.0], y=[1901.0, 709229.0] (must be same and length>=4)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | could have reported an average CPU frequency of 2585 MHz (4 samples)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,469 | INFO     | . Timing measurements:
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . get job = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . initial setup = 3 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload setup = 18 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-in = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . payload execution = 85 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,470 | INFO     | . stage-out = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | . log creation = 0 s
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | ..............................
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 01:33:29] 2025-11-28 09:32:55,481 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900219937/pilotlog.txt
[2025-11-28 01:33:29] [end log extracts]
[2025-11-28 01:33:29] 2025-11-28 09:32:55,562 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-28 01:33:29] 2025-11-28 09:32:55,563 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | 
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | job summary report
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | --------------------------------------------------
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | PanDA job id: 6900219937
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | task id: 47556185
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-28 01:30:26,915 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | pilot state: failed 
[2025-11-28 01:33:29] 2025-11-28 09:32:56,108 | INFO     | transexitcode: 65
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | exeerrorcode: 65
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | exitcode: 65
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | cpuconsumptiontime: 41 s
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | nevents: 0
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | neventsw: 0
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | pid: 3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | pgrp: 3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | corecount: 12
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | event service: False
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | sizes: {0: 2284086, 1: 2284170, 2: 2284369, 3: 2284369, 14: 2284397, 15: 2284687, 24: 2284843, 107: 2310240, 109: 2314530, 110: 2314586, 249: 2314752}
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | --------------------------------------------------
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | 
[2025-11-28 01:33:29] 2025-11-28 09:32:56,109 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-28 01:33:29] 2025-11-28 09:32:56,226 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:33:29] 2025-11-28 09:32:56,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:33:29] 2025-11-28 09:32:56,228 | INFO     | job 6900219937 has completed (purged errors)
[2025-11-28 01:33:29] 2025-11-28 09:32:56,228 | INFO     | overall cleanup function is called
[2025-11-28 01:33:29] 2025-11-28 09:32:57,253 | INFO     | --- collectZombieJob: --- 10, [3370310]
[2025-11-28 01:33:29] 2025-11-28 09:32:57,253 | INFO     | zombie collector waiting for pid 3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:57,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:33:29] 2025-11-28 09:32:57,253 | INFO     | collected zombie processes
[2025-11-28 01:33:29] 2025-11-28 09:32:57,253 | INFO     | will attempt to kill all subprocesses of pid=3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:57,671 | INFO     | process IDs to be killed: [3370310] (in reverse order)
[2025-11-28 01:33:29] 2025-11-28 09:32:57,883 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:33:29] 2025-11-28 09:32:57,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:33:29] 2025-11-28 09:32:57,911 | INFO     | did not find any defunct processes belonging to 3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:57,946 | INFO     | did not find any defunct processes belonging to 3370310
[2025-11-28 01:33:29] 2025-11-28 09:32:57,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:33:29] 2025-11-28 09:32:57,947 | INFO     | ready for new job
[2025-11-28 01:33:29] 2025-11-28 09:32:57,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:33:29] 2025-11-28 09:32:57,949 | INFO     | ***************************************
[2025-11-28 01:33:29] 2025-11-28 09:32:57,949 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:33:29] 2025-11-28 09:32:57,949 | INFO     | ***************************************
[2025-11-28 01:33:29] 2025-11-28 09:32:57,949 | INFO     | 
[2025-11-28 01:33:29] 2025-11-28 09:32:57,951 | INFO     | architecture information:
[2025-11-28 01:33:29] 2025-11-28 09:32:57,951 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:33:29] 2025-11-28 09:32:57,989 | INFO     | cat /etc/os-release:
[2025-11-28 01:33:29] NAME="CentOS Linux"
[2025-11-28 01:33:29] VERSION="7 (Core)"
[2025-11-28 01:33:29] ID="centos"
[2025-11-28 01:33:29] ID_LIKE="rhel fedora"
[2025-11-28 01:33:29] VERSION_ID="7"
[2025-11-28 01:33:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:33:29] ANSI_COLOR="0;31"
[2025-11-28 01:33:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:33:29] HOME_URL="https://www.centos.org/"
[2025-11-28 01:33:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:33:29] 
[2025-11-28 01:33:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:33:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:33:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:33:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:33:29] 
[2025-11-28 01:33:29] 2025-11-28 09:32:57,989 | INFO     | ***************************************
[2025-11-28 01:33:29] 2025-11-28 09:32:58,493 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-28 01:33:29] 2025-11-28 09:32:58,628 | INFO     | sufficient remaining disk space (2083221667840 B)
[2025-11-28 01:33:29] 2025-11-28 09:32:58,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:33:29] 2025-11-28 09:32:58,629 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:33:29] 2025-11-28 09:32:58,629 | INFO     | update_server=False
[2025-11-28 01:33:29] 2025-11-28 09:32:58,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:33:29] 2025-11-28 09:32:58,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:33:29] 2025-11-28 09:32:58,630 | INFO     | aborting loop
[2025-11-28 01:33:29] 2025-11-28 09:32:58,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:33:29] 2025-11-28 09:32:58,928 | INFO     | all data control threads have been joined
[2025-11-28 01:33:29] 2025-11-28 09:32:59,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:33:29] 2025-11-28 09:32:59,511 | INFO     | all job control threads have been joined
[2025-11-28 01:33:29] 2025-11-28 09:32:59,635 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:32:59,636 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:32:59,676 | INFO     | all payload control threads have been joined
[2025-11-28 01:33:29] 2025-11-28 09:32:59,774 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:32:59,908 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:32:59,934 | INFO     | [data] control thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,380 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,386 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,519 | INFO     | [job] control thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,532 | INFO     | [job] validate thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,582 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:33:29] 2025-11-28 09:33:00,682 | INFO     | [payload] control thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:00,922 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:01,090 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:01,357 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:01,655 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:02,647 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:33:29] 2025-11-28 09:33:10,316 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:33:29] 2025-11-28 09:33:11,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924412696384)>', '<ExcThread(monitor, started 139923642373888)>']
[2025-11-28 01:33:29] 2025-11-28 09:33:16,680 | INFO     | all workflow threads have been joined
[2025-11-28 01:33:29] 2025-11-28 09:33:16,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:33:29] 2025-11-28 09:33:16,680 | INFO     | traces error code: 0
[2025-11-28 01:33:29] 2025-11-28 09:33:16,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:33:29] 2025-11-28 09:33:28,255 | INFO     | PID=3363575 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 01:33:29] 2025-11-28 09:33:28,255 | INFO     | .. there are 35 such processes running
[2025-11-28 01:33:29] 2025-11-28 09:33:28,256 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:33:29] 2025-11-28 09:33:28,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:33:29] 2025-11-28 09:33:28,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:33:29] 2025-11-28 09:33:28,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:33:29] 2025-11-28 09:33:28,256 | INFO     | [monitor] control thread has ended
[2025-11-28 01:33:29] 2025-11-28 09:33:28,377 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:33:29] 2025-11-28 09:33:28,379 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:33:29] 2025-11-28 09:33:28,381 [wrapper] pilotpid: 3363575
[2025-11-28 01:33:29] 2025-11-28 09:33:28,383 [wrapper] Pilot exit status: 0
[2025-11-28 01:33:29] 2025-11-28 09:33:28,409 [wrapper] pandaids: 6900219937
[2025-11-28 01:33:29] 2025-11-28 09:33:28,539 [wrapper] cleanup supervisor_pilot 3363581 3363576
[2025-11-28 01:33:29] 2025-11-28 09:33:28,542 [wrapper] Test setup, not cleaning
[2025-11-28 01:33:29] 2025-11-28 09:33:28,555 [wrapper] apfmon messages muted
[2025-11-28 01:33:29] 2025-11-28 09:33:28,564 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:33:29] 2025-11-28 09:33:28,571 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:33:29]  *** Error codes and diagnostics ***
[2025-11-28 01:33:29]     "exeErrorCode": 65,
[2025-11-28 01:33:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-28 01:33:29]     "pilotErrorCode": 1305,
[2025-11-28 01:33:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-28 01:33:29]  *** Listing of results directory ***
[2025-11-28 01:33:29] total 404108
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc    576529 Nov 27 08:16 pilot3.tar.gz
[2025-11-28 01:33:29] -rwx------. 1 boinc boinc     36292 Nov 27 08:17 runpilot2-wrapper.sh
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc      5112 Nov 27 08:17 queuedata.json
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc       100 Nov 28 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:33:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 01:27 run_atlas
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc       105 Nov 28 01:27 job.xml
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc      6595 Nov 28 01:27 init_data.xml
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc 409593936 Nov 28 01:27 EVNT.47483658._004363.pool.root.1
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:27 start_atlas.sh
[2025-11-28 01:33:29] drwxrwx--x. 2 boinc boinc      4096 Nov 28 01:27 shared
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc    590105 Nov 28 01:27 input.tar.gz
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc         0 Nov 28 01:27 boinc_lockfile
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc      2787 Nov 28 01:27 pandaJob.out
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc    991864 Nov 28 01:28 agis_schedconf.cvmfs.json
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc   1516240 Nov 28 01:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:33:29] drwx------. 5 boinc boinc      4096 Nov 28 01:28 pilot3
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc       525 Nov 28 01:30 boinc_task_state.xml
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc       990 Nov 28 01:30 memory_monitor_summary.json
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc     48778 Nov 28 01:30 log.47556185._001263.job.log.tgz.1
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc     10335 Nov 28 01:32 heartbeat.json
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:33 boinc_mmap_file
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc        23 Nov 28 01:33 wrapper_checkpoint.txt
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc       823 Nov 28 01:33 pilotlog.txt
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc        95 Nov 28 01:33 pilot_heartbeat.json
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc    102130 Nov 28 01:33 log.47556185._001263.job.log.1
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc       186 Nov 28 01:33 output.list
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:33 runtime_log
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc    174080 Nov 28 01:33 result.tar.gz
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc       645 Nov 28 01:33 YzsKDmQrti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKjKKDmLHK14m.diag
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc      8636 Nov 28 01:33 runtime_log.err
[2025-11-28 01:33:29] -rw-r--r--. 1 boinc boinc     22522 Nov 28 01:33 stderr.txt
[2025-11-28 01:33:29] No HITS result produced
[2025-11-28 01:33:29]  *** Contents of shared directory: ***
[2025-11-28 01:33:29] total 400768
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc 409593936 Nov 28 01:27 ATLAS.root_0
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:27 start_atlas.sh
[2025-11-28 01:33:29] -rw-r--r--. 2 boinc boinc    590105 Nov 28 01:27 input.tar.gz
[2025-11-28 01:33:29] -rw-------. 1 boinc boinc    174080 Nov 28 01:33 result.tar.gz
01:33:30 (3359806): run_atlas exited; CPU time 45.384632
01:33:30 (3359806): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN