Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:12:03 (3618291): wrapper (7.7.26015): starting
02:12:03 (3618291): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 02:12:03] Arguments: --nthreads 12
[2025-11-29 02:12:03] Threads: 12
[2025-11-29 02:12:03] Checking for CVMFS
[2025-11-29 02:12:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:12:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:12:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:12:04] 2.13.3.0 14095 10700 98180 153424 2 81 3680408 4097024 1043 130560 0 8340972 99.932 894976 13378 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-29 02:12:04] CVMFS is ok
[2025-11-29 02:12:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:12:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:12:04] Further information can be found at the LHC@home message board.
[2025-11-29 02:12:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:12:04] Checking for apptainer binary...
[2025-11-29 02:12:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 02:12:04] Running /usr/bin/apptainer --version
[2025-11-29 02:12:04] apptainer version 1.4.4-1.el9
[2025-11-29 02:12:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:12:04] pckelar7.cern.ch
[2025-11-29 02:12:04] apptainer works
[2025-11-29 02:12:04] Set ATHENA_PROC_NUMBER=12
[2025-11-29 02:12:04] Set ATHENA_CORE_NUMBER=12
[2025-11-29 02:12:04] Starting ATLAS job with PandaID=6893840282
[2025-11-29 02:12:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 14:13:32]  *** The last 200 lines of the pilot log: ***
[2025-11-29 14:13:32] 2025-11-29 13:12:31,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 14:13:32] 2025-11-29 13:12:31,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 14:13:32] 2025-11-29 13:12:31,721 | INFO     | fitting pss+swap vs Time
[2025-11-29 14:13:32] 2025-11-29 13:12:31,722 | INFO     | sum of square deviations: 110046423424.59175
[2025-11-29 14:13:32] 2025-11-29 13:12:31,738 | INFO     | sum of deviations: 1538988530409.7915
[2025-11-29 14:13:32] 2025-11-29 13:12:31,738 | INFO     | mean x: 1764400329.4759886
[2025-11-29 14:13:32] 2025-11-29 13:12:31,738 | INFO     | mean y: 3568383.8700564974
[2025-11-29 14:13:32] 2025-11-29 13:12:31,739 | INFO     | intersect: -24671398649.252106
[2025-11-29 14:13:32] 2025-11-29 13:12:31,740 | INFO     | chi2: 7.008498592879538
[2025-11-29 14:13:32] 2025-11-29 13:12:31,741 | INFO     | sum of square deviations: 107731558209.79483
[2025-11-29 14:13:32] 2025-11-29 13:12:31,757 | INFO     | sum of deviations: 1835139509382.162
[2025-11-29 14:13:32] 2025-11-29 13:12:31,757 | INFO     | mean x: 1764400176.9829302
[2025-11-29 14:13:32] 2025-11-29 13:12:31,757 | INFO     | mean y: 3587889.347083926
[2025-11-29 14:13:32] 2025-11-29 13:12:31,758 | INFO     | intersect: -30051862240.1013
[2025-11-29 14:13:32] 2025-11-29 13:12:31,759 | INFO     | chi2: 3.6903306108893665
[2025-11-29 14:13:32] 2025-11-29 13:12:31,759 | INFO     | current chi2=3.6903306108893665 (change=47.34491900107319 %)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,760 | INFO     | sum of square deviations: 105449391282.42981
[2025-11-29 14:13:32] 2025-11-29 13:12:31,776 | INFO     | sum of deviations: 1976369623202.0962
[2025-11-29 14:13:32] 2025-11-29 13:12:31,776 | INFO     | mean x: 1764400024.4899714
[2025-11-29 14:13:32] 2025-11-29 13:12:31,776 | INFO     | mean y: 3597317.7277936963
[2025-11-29 14:13:32] 2025-11-29 13:12:31,777 | INFO     | intersect: -33065409237.64758
[2025-11-29 14:13:32] 2025-11-29 13:12:31,778 | INFO     | chi2: 2.7362709574618624
[2025-11-29 14:13:32] 2025-11-29 13:12:31,778 | INFO     | current chi2=2.7362709574618624 (change=25.85295882738204 %)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,779 | INFO     | sum of square deviations: 103199562714.96385
[2025-11-29 14:13:32] 2025-11-29 13:12:31,794 | INFO     | sum of deviations: 1985087521465.533
[2025-11-29 14:13:32] 2025-11-29 13:12:31,795 | INFO     | mean x: 1764399871.992785
[2025-11-29 14:13:32] 2025-11-29 13:12:31,795 | INFO     | mean y: 3597896.1067821067
[2025-11-29 14:13:32] 2025-11-29 13:12:31,795 | INFO     | intersect: -33935384756.776142
[2025-11-29 14:13:32] 2025-11-29 13:12:31,796 | INFO     | chi2: 2.589726506330092
[2025-11-29 14:13:32] 2025-11-29 13:12:31,796 | INFO     | current chi2=2.589726506330092 (change=5.355626449644584 %)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,796 | INFO     | right removable region: 692
[2025-11-29 14:13:32] 2025-11-29 13:12:31,797 | INFO     | sum of square deviations: 107731179644.75955
[2025-11-29 14:13:32] 2025-11-29 13:12:31,814 | INFO     | sum of deviations: 1285841951681.6792
[2025-11-29 14:13:32] 2025-11-29 13:12:31,814 | INFO     | mean x: 1764400481.9815078
[2025-11-29 14:13:32] 2025-11-29 13:12:31,814 | INFO     | mean y: 3585033.283072546
[2025-11-29 14:13:32] 2025-11-29 13:12:31,814 | INFO     | intersect: -21055686449.497517
[2025-11-29 14:13:32] 2025-11-29 13:12:31,815 | INFO     | chi2: 4.705286741490806
[2025-11-29 14:13:32] 2025-11-29 13:12:31,815 | INFO     | current chi2=4.705286741490806 (change=32.863127827816626 %)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,817 | INFO     | sum of square deviations: 105448805932.25775
[2025-11-29 14:13:32] 2025-11-29 13:12:31,832 | INFO     | sum of deviations: 1201738625862.2786
[2025-11-29 14:13:32] 2025-11-29 13:12:31,833 | INFO     | mean x: 1764400634.4813755
[2025-11-29 14:13:32] 2025-11-29 13:12:31,833 | INFO     | mean y: 3590651.2908309456
[2025-11-29 14:13:32] 2025-11-29 13:12:31,833 | INFO     | intersect: -20104255760.11691
[2025-11-29 14:13:32] 2025-11-29 13:12:31,834 | INFO     | chi2: 4.595279504896358
[2025-11-29 14:13:32] 2025-11-29 13:12:31,834 | INFO     | current chi2=4.595279504896358 (change=2.3379496859227173 %)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,834 | INFO     | left removable region: 20
[2025-11-29 14:13:32] 2025-11-29 13:12:31,835 | INFO     | sum of square deviations: 94099042799.9983
[2025-11-29 14:13:32] 2025-11-29 13:12:31,852 | INFO     | sum of deviations: 1524571521271.8857
[2025-11-29 14:13:32] 2025-11-29 13:12:31,852 | INFO     | mean x: 1764400451.4985118
[2025-11-29 14:13:32] 2025-11-29 13:12:31,852 | INFO     | mean y: 3629183.886904762
[2025-11-29 14:13:32] 2025-11-29 13:12:31,852 | INFO     | intersect: -28582789980.771557
[2025-11-29 14:13:32] 2025-11-29 13:12:31,853 | INFO     | chi2: 0.0964554795433785
[2025-11-29 14:13:32] 2025-11-29 13:12:31,854 | INFO     | current memory leak: 16.20 B/s (using 672 data points, chi2=0.10)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,855 | INFO     | could have reported an average CPU frequency of 2802 MHz (27 samples)
[2025-11-29 14:13:32] 2025-11-29 13:12:31,855 | INFO     | ..............................
[2025-11-29 14:13:32] 2025-11-29 13:12:31,855 | INFO     | . Timing measurements:
[2025-11-29 14:13:32] 2025-11-29 13:12:31,855 | INFO     | . get job = 0 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . initial setup = 1 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . payload setup = 9 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . stage-in = 0 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . payload execution = 43177 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . stage-out = 2 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | . log creation = 0 s
[2025-11-29 14:13:32] 2025-11-29 13:12:31,856 | INFO     | ..............................
[2025-11-29 14:13:32] 2025-11-29 13:12:32,022 | INFO     | 
[2025-11-29 14:13:32] 2025-11-29 13:12:32,023 | INFO     | job summary report
[2025-11-29 14:13:32] 2025-11-29 13:12:32,023 | INFO     | --------------------------------------------------
[2025-11-29 14:13:32] 2025-11-29 13:12:32,023 | INFO     | PanDA job id: 6893840282
[2025-11-29 14:13:32] 2025-11-29 13:12:32,023 | INFO     | task id: 47523449
[2025-11-29 14:13:32] 2025-11-29 13:12:32,023 | INFO     | errors: (none)
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | pilot state: finished 
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | transexitcode: 0
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | exeerrorcode: 0
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | exeerrordiag: 
[2025-11-29 14:13:32] 2025-11-29 13:12:32,024 | INFO     | exitcode: 0
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | exitmsg: OK
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | cpuconsumptiontime: 503068 s
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | nevents: 1000
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | neventsw: 0
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | pid: 3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:32,025 | INFO     | pgrp: 3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:32,026 | INFO     | corecount: 12
[2025-11-29 14:13:32] 2025-11-29 13:12:32,026 | INFO     | event service: False
[2025-11-29 14:13:32] 2025-11-29 13:12:32,026 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 6: 2284633, 12: 2284661, 43191: 2328791, 43194: 2337785, 43197: 2337841, 43202: 2338087}
[2025-11-29 14:13:32] 2025-11-29 13:12:32,026 | INFO     | --------------------------------------------------
[2025-11-29 14:13:32] 2025-11-29 13:12:32,026 | INFO     | 
[2025-11-29 14:13:32] 2025-11-29 13:12:32,027 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-29 14:13:32] 2025-11-29 13:12:32,046 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,046 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,046 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,046 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,047 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 14:13:32] 2025-11-29 13:12:32,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 14:13:32] 2025-11-29 13:12:32,049 | INFO     | job 6893840282 has completed (purged errors)
[2025-11-29 14:13:32] 2025-11-29 13:12:32,050 | INFO     | overall cleanup function is called
[2025-11-29 14:13:32] 2025-11-29 13:12:33,072 | INFO     | --- collectZombieJob: --- 10, [3629619]
[2025-11-29 14:13:32] 2025-11-29 13:12:33,072 | INFO     | zombie collector waiting for pid 3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:33,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 14:13:32] 2025-11-29 13:12:33,072 | INFO     | collected zombie processes
[2025-11-29 14:13:32] 2025-11-29 13:12:33,073 | INFO     | will attempt to kill all subprocesses of pid=3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:33,254 | INFO     | process IDs to be killed: [3629619] (in reverse order)
[2025-11-29 14:13:32] 2025-11-29 13:12:33,311 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 14:13:32] 2025-11-29 13:12:33,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 14:13:32] 2025-11-29 13:12:33,319 | INFO     | did not find any defunct processes belonging to 3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:33,325 | INFO     | did not find any defunct processes belonging to 3629619
[2025-11-29 14:13:32] 2025-11-29 13:12:33,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 14:13:32] 2025-11-29 13:12:33,327 | INFO     | ready for new job
[2025-11-29 14:13:32] 2025-11-29 13:12:33,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 14:13:32] 2025-11-29 13:12:33,332 | INFO     | ***************************************
[2025-11-29 14:13:32] 2025-11-29 13:12:33,333 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 14:13:32] 2025-11-29 13:12:33,333 | INFO     | ***************************************
[2025-11-29 14:13:32] 2025-11-29 13:12:33,333 | INFO     | 
[2025-11-29 14:13:32] 2025-11-29 13:12:33,334 | INFO     | architecture information:
[2025-11-29 14:13:32] 2025-11-29 13:12:33,335 | INFO     | executing command: cat /etc/os-release
[2025-11-29 14:13:32] 2025-11-29 13:12:33,348 | INFO     | cat /etc/os-release:
[2025-11-29 14:13:32] NAME="CentOS Linux"
[2025-11-29 14:13:32] VERSION="7 (Core)"
[2025-11-29 14:13:32] ID="centos"
[2025-11-29 14:13:32] ID_LIKE="rhel fedora"
[2025-11-29 14:13:32] VERSION_ID="7"
[2025-11-29 14:13:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 14:13:32] ANSI_COLOR="0;31"
[2025-11-29 14:13:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 14:13:32] HOME_URL="https://www.centos.org/"
[2025-11-29 14:13:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 14:13:32] 
[2025-11-29 14:13:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 14:13:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 14:13:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 14:13:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 14:13:32] 
[2025-11-29 14:13:32] 2025-11-29 13:12:33,349 | INFO     | ***************************************
[2025-11-29 14:13:32] 2025-11-29 13:12:33,852 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-29 14:13:32] 2025-11-29 13:12:33,868 | INFO     | sufficient remaining disk space (1782843441152 B)
[2025-11-29 14:13:32] 2025-11-29 13:12:33,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 14:13:32] 2025-11-29 13:12:33,869 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 14:13:32] 2025-11-29 13:12:33,869 | INFO     | update_server=False
[2025-11-29 14:13:32] 2025-11-29 13:12:33,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 14:13:32] 2025-11-29 13:12:33,870 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 14:13:32] 2025-11-29 13:12:33,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 14:13:32] 2025-11-29 13:12:33,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 14:13:32] 2025-11-29 13:12:33,871 | INFO     | aborting loop
[2025-11-29 14:13:32] 2025-11-29 13:12:34,244 | INFO     | all data control threads have been joined
[2025-11-29 14:13:32] 2025-11-29 13:12:34,619 | INFO     | all payload control threads have been joined
[2025-11-29 14:13:32] 2025-11-29 13:12:34,875 | INFO     | [job] retrieve thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:34,876 | INFO     | [job] queue monitor thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:34,877 | INFO     | [job] job monitor thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:34,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 14:13:32] 2025-11-29 13:12:35,047 | INFO     | all job control threads have been joined
[2025-11-29 14:13:32] 2025-11-29 13:12:35,180 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,250 | INFO     | [data] control thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,319 | INFO     | [payload] validate_post thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,388 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,446 | INFO     | [payload] failed_post thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,448 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,566 | INFO     | [data] copytool_in thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:35,625 | INFO     | [payload] control thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:36,011 | INFO     | [job] validate thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:36,053 | INFO     | [job] control thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:36,227 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:36,978 | INFO     | [data] copytool_out thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:12:37,876 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 14:13:32] 2025-11-29 13:13:03,377 | INFO     | PID=3622121 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 14:13:32] 2025-11-29 13:13:03,378 | INFO     | .. there are 2 such processes running
[2025-11-29 14:13:32] 2025-11-29 13:13:03,379 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 14:13:32] 2025-11-29 13:13:03,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 14:13:32] 2025-11-29 13:13:03,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 14:13:32] 2025-11-29 13:13:26,355 | INFO     | [monitor] cgroup control has ended
[2025-11-29 14:13:32] 2025-11-29 13:13:26,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139959837058880)>', '<ExcThread(monitor, started 139959201679104)>']
[2025-11-29 14:13:32] 2025-11-29 13:13:27,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 14:13:32] 2025-11-29 13:13:27,491 | INFO     | [monitor] control thread has ended
[2025-11-29 14:13:32] 2025-11-29 13:13:31,872 | INFO     | all workflow threads have been joined
[2025-11-29 14:13:32] 2025-11-29 13:13:31,873 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 14:13:32] 2025-11-29 13:13:31,873 | INFO     | traces error code: 0
[2025-11-29 14:13:32] 2025-11-29 13:13:31,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 14:13:32] 2025-11-29 13:13:31,991 [wrapper] ==== pilot stdout END ====
[2025-11-29 14:13:32] 2025-11-29 13:13:31,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 14:13:32] 2025-11-29 13:13:31,997 [wrapper] pilotpid: 3622121
[2025-11-29 14:13:32] 2025-11-29 13:13:32,000 [wrapper] Pilot exit status: 0
[2025-11-29 14:13:32] 2025-11-29 13:13:32,010 [wrapper] pandaids: 6893840282
[2025-11-29 14:13:32] 2025-11-29 13:13:32,047 [wrapper] cleanup supervisor_pilot 3860085 3622122
[2025-11-29 14:13:32] 2025-11-29 13:13:32,050 [wrapper] Test setup, not cleaning
[2025-11-29 14:13:32] 2025-11-29 13:13:32,053 [wrapper] apfmon messages muted
[2025-11-29 14:13:32] 2025-11-29 13:13:32,056 [wrapper] ==== wrapper stdout END ====
[2025-11-29 14:13:32] 2025-11-29 13:13:32,058 [wrapper] ==== wrapper stderr END ====
[2025-11-29 14:13:32]  *** Error codes and diagnostics ***
[2025-11-29 14:13:32]     "exeErrorCode": 0,
[2025-11-29 14:13:32]     "exeErrorDiag": "",
[2025-11-29 14:13:32]     "pilotErrorCode": 0,
[2025-11-29 14:13:32]     "pilotErrorDiag": "",
[2025-11-29 14:13:32]  *** Listing of results directory ***
[2025-11-29 14:13:32] total 1326116
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-29 14:13:32] -rwx------ 1 boinc boinc     36292 Nov 20 11:20 runpilot2-wrapper.sh
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc       100 Nov 29 02:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 14:13:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 02:12 run_atlas
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc       105 Nov 29 02:12 job.xml
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc      6252 Nov 29 02:12 init_data.xml
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc 412084563 Nov 29 02:12 EVNT.47493127._000173.pool.root.1
[2025-11-29 14:13:32] drwxrwx--x 2 boinc boinc      4096 Nov 29 02:12 shared
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc    590100 Nov 29 02:12 input.tar.gz
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc     15847 Nov 29 02:12 start_atlas.sh
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc         0 Nov 29 02:12 boinc_lockfile
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc      2786 Nov 29 02:12 pandaJob.out
[2025-11-29 14:13:32] -rw------- 1 boinc boinc    991818 Nov 29 02:12 agis_schedconf.cvmfs.json
[2025-11-29 14:13:32] drwx------ 5 boinc boinc      4096 Nov 29 02:12 pilot3
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc       533 Nov 29 13:59 boinc_task_state.xml
[2025-11-29 14:13:32] -rw------- 1 boinc boinc 925148326 Nov 29 14:11 HITS.47523449._001728.pool.root.1
[2025-11-29 14:13:32] -rw------- 1 boinc boinc      1049 Nov 29 14:12 memory_monitor_summary.json
[2025-11-29 14:13:32] -rw------- 1 boinc boinc   1516240 Nov 29 14:12 agis_ddmendpoints.agis.ALL.json
[2025-11-29 14:13:32] -rw------- 1 boinc boinc   2402478 Nov 29 14:12 log.47523449._001728.job.log.tgz.1
[2025-11-29 14:13:32] -rw------- 1 boinc boinc      8611 Nov 29 14:12 heartbeat.json
[2025-11-29 14:13:32] -rw------- 1 boinc boinc        95 Nov 29 14:13 pilot_heartbeat.json
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc        29 Nov 29 14:13 wrapper_checkpoint.txt
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc      8192 Nov 29 14:13 boinc_mmap_file
[2025-11-29 14:13:32] -rw------- 1 boinc boinc      4825 Nov 29 14:13 pilotlog.txt
[2025-11-29 14:13:32] -rw------- 1 boinc boinc   5992011 Nov 29 14:13 log.47523449._001728.job.log.1
[2025-11-29 14:13:32] -rw------- 1 boinc boinc       353 Nov 29 14:13 output.list
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc       620 Nov 29 14:13 runtime_log
[2025-11-29 14:13:32] -rw------- 1 boinc boinc   8417280 Nov 29 14:13 result.tar.gz
[2025-11-29 14:13:32] -rw------- 1 boinc boinc       665 Nov 29 14:13 ToSLDmswGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJNHKDmW4IHIm.diag
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc      8842 Nov 29 14:13 runtime_log.err
[2025-11-29 14:13:32] -rw-r--r-- 1 boinc boinc     21131 Nov 29 14:13 stderr.txt
[2025-11-29 14:13:32] HITS file was successfully produced:
[2025-11-29 14:13:32] -rw------- 1 boinc boinc 925148326 Nov 29 14:11 shared/HITS.pool.root.1
[2025-11-29 14:13:32]  *** Contents of shared directory: ***
[2025-11-29 14:13:32] total 1314720
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc 412084563 Nov 29 02:12 ATLAS.root_0
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc    590100 Nov 29 02:12 input.tar.gz
[2025-11-29 14:13:32] -rw-r--r-- 2 boinc boinc     15847 Nov 29 02:12 start_atlas.sh
[2025-11-29 14:13:32] -rw------- 1 boinc boinc 925148326 Nov 29 14:11 HITS.pool.root.1
[2025-11-29 14:13:32] -rw------- 1 boinc boinc   8417280 Nov 29 14:13 result.tar.gz
14:13:33 (3618291): run_atlas exited; CPU time 503212.967389
14:13:33 (3618291): called boinc_finish(0)

</stderr_txt>
]]>

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