Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:14:00 (6758): wrapper (7.7.26015): starting
02:14:00 (6758): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 02:14:00] Arguments: --nthreads 8
[2025-11-28 02:14:00] Threads: 8
[2025-11-28 02:14:00] Checking for CVMFS
[2025-11-28 02:14:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 02:14:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 02:14:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 02:14:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 02:14:00] 2.11.2.0 2781 74175 94160 153400 1 81 11284117 20275200 1 130560 0 21419975 99.878 4126071 33564 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 02:14:00] CVMFS is ok
[2025-11-28 02:14:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 02:14:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 02:14:00] Further information can be found at the LHC@home message board.
[2025-11-28 02:14:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 02:14:00] Checking for apptainer binary...
[2025-11-28 02:14:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 02:14:00] Running /usr/bin/apptainer --version
[2025-11-28 02:14:00] apptainer version 1.3.2-1.el7
[2025-11-28 02:14:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 02:14:02] c-115-16.aglt2.org
[2025-11-28 02:14:02] apptainer works
[2025-11-28 02:14:02] Set ATHENA_PROC_NUMBER=8
[2025-11-28 02:14:02] Set ATHENA_CORE_NUMBER=8
[2025-11-28 02:14:02] Starting ATLAS job with PandaID=6892540417
[2025-11-28 02:14:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:23:32]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:23:32] 2025-11-28 18:22:37,572 | INFO     | PID=10477 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 13:23:32] 2025-11-28 18:22:38,162 | INFO     | monitor loop #2951: job 0:6892540417 is in state 'finished'
[2025-11-28 13:23:32] 2025-11-28 18:22:38,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 13:23:32] 2025-11-28 18:22:38,573 | INFO     | time since job start (40099s) is within the limit (172800.0s)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,669 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 13:23:32] 2025-11-28 18:22:39,672 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-28 13:23:32] 2025-11-28 18:22:39,674 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892540417/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,675 | INFO     | extracted standard info from prmon json
[2025-11-28 13:23:32] 2025-11-28 18:22:39,675 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 13:23:32] 2025-11-28 18:22:39,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 13:23:32] 2025-11-28 18:22:39,686 | INFO     | fitting pss+swap vs Time
[2025-11-28 13:23:32] 2025-11-28 18:22:39,687 | INFO     | sum of square deviations: 87937237330.11235
[2025-11-28 13:23:32] 2025-11-28 18:22:39,698 | INFO     | sum of deviations: 671485219894.6199
[2025-11-28 13:23:32] 2025-11-28 18:22:39,698 | INFO     | mean x: 1764334098.5966516
[2025-11-28 13:23:32] 2025-11-28 18:22:39,698 | INFO     | mean y: 3113246.281582953
[2025-11-28 13:23:32] 2025-11-28 18:22:39,698 | INFO     | intersect: -13469271219.429434
[2025-11-28 13:23:32] 2025-11-28 18:22:39,699 | INFO     | chi2: 6.24781470528149
[2025-11-28 13:23:32] 2025-11-28 18:22:39,699 | INFO     | sum of square deviations: 85944891623.31905
[2025-11-28 13:23:32] 2025-11-28 18:22:39,708 | INFO     | sum of deviations: 902801422403.0837
[2025-11-28 13:23:32] 2025-11-28 18:22:39,708 | INFO     | mean x: 1764333946.101227
[2025-11-28 13:23:32] 2025-11-28 18:22:39,708 | INFO     | mean y: 3130943.2714723926
[2025-11-28 13:23:32] 2025-11-28 18:22:39,708 | INFO     | intersect: -18530177622.819668
[2025-11-28 13:23:32] 2025-11-28 18:22:39,709 | INFO     | chi2: 3.2102102794613607
[2025-11-28 13:23:32] 2025-11-28 18:22:39,709 | INFO     | current chi2=3.2102102794613607 (change=48.61867019283301 %)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,709 | INFO     | sum of square deviations: 83982872066.49756
[2025-11-28 13:23:32] 2025-11-28 18:22:39,717 | INFO     | sum of deviations: 989854254138.597
[2025-11-28 13:23:32] 2025-11-28 18:22:39,717 | INFO     | mean x: 1764333793.6058733
[2025-11-28 13:23:32] 2025-11-28 18:22:39,718 | INFO     | mean y: 3137703.42194745
[2025-11-28 13:23:32] 2025-11-28 18:22:39,718 | INFO     | intersect: -20791975256.497295
[2025-11-28 13:23:32] 2025-11-28 18:22:39,718 | INFO     | chi2: 2.6655846847606246
[2025-11-28 13:23:32] 2025-11-28 18:22:39,718 | INFO     | current chi2=2.6655846847606246 (change=16.965418065763547 %)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,719 | INFO     | right removable region: 646
[2025-11-28 13:23:32] 2025-11-28 18:22:39,719 | INFO     | sum of square deviations: 85944652503.31908
[2025-11-28 13:23:32] 2025-11-28 18:22:39,727 | INFO     | sum of deviations: 468176615407.0187
[2025-11-28 13:23:32] 2025-11-28 18:22:39,727 | INFO     | mean x: 1764334251.101227
[2025-11-28 13:23:32] 2025-11-28 18:22:39,727 | INFO     | mean y: 3128777.226993865
[2025-11-28 13:23:32] 2025-11-28 18:22:39,728 | INFO     | intersect: -9607940836.386833
[2025-11-28 13:23:32] 2025-11-28 18:22:39,728 | INFO     | chi2: 3.7697970861727157
[2025-11-28 13:23:32] 2025-11-28 18:22:39,728 | INFO     | current chi2=3.7697970861727157 (change=39.6621496635299 %)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,729 | INFO     | sum of square deviations: 83982393826.49757
[2025-11-28 13:23:32] 2025-11-28 18:22:39,737 | INFO     | sum of deviations: 429898011861.29535
[2025-11-28 13:23:32] 2025-11-28 18:22:39,737 | INFO     | mean x: 1764334403.6058733
[2025-11-28 13:23:32] 2025-11-28 18:22:39,737 | INFO     | mean y: 3131750.1854714067
[2025-11-28 13:23:32] 2025-11-28 18:22:39,737 | INFO     | intersect: -9028330891.087055
[2025-11-28 13:23:32] 2025-11-28 18:22:39,738 | INFO     | chi2: 3.734337442156961
[2025-11-28 13:23:32] 2025-11-28 18:22:39,738 | INFO     | current chi2=3.734337442156961 (change=0.9406247393478475 %)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,738 | INFO     | left removable region: 20
[2025-11-28 13:23:32] 2025-11-28 18:22:39,739 | INFO     | sum of square deviations: 76067500866.0131
[2025-11-28 13:23:32] 2025-11-28 18:22:39,746 | INFO     | sum of deviations: 704066208356.7863
[2025-11-28 13:23:32] 2025-11-28 18:22:39,746 | INFO     | mean x: 1764334373.1198082
[2025-11-28 13:23:32] 2025-11-28 18:22:39,746 | INFO     | mean y: 3160691.549520767
[2025-11-28 13:23:32] 2025-11-28 18:22:39,747 | INFO     | intersect: -16327180100.69055
[2025-11-28 13:23:32] 2025-11-28 18:22:39,747 | INFO     | chi2: 0.10965473919692692
[2025-11-28 13:23:32] 2025-11-28 18:22:39,747 | INFO     | current memory leak: 9.26 B/s (using 626 data points, chi2=0.11)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | could have reported an average CPU frequency of 2372 MHz (25 samples)
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | ..............................
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | . Timing measurements:
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | . get job = 0 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | . initial setup = 2 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | . payload setup = 8 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,748 | INFO     | . stage-in = 0 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,749 | INFO     | . payload execution = 40059 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,749 | INFO     | . stage-out = 3 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,749 | INFO     | . log creation = 0 s
[2025-11-28 13:23:32] 2025-11-28 18:22:39,749 | INFO     | ..............................
[2025-11-28 13:23:32] 2025-11-28 18:22:40,289 | INFO     | 
[2025-11-28 13:23:32] 2025-11-28 18:22:40,290 | INFO     | job summary report
[2025-11-28 13:23:32] 2025-11-28 18:22:40,290 | INFO     | --------------------------------------------------
[2025-11-28 13:23:32] 2025-11-28 18:22:40,290 | INFO     | PanDA job id: 6892540417
[2025-11-28 13:23:32] 2025-11-28 18:22:40,290 | INFO     | task id: 47493029
[2025-11-28 13:23:32] 2025-11-28 18:22:40,290 | INFO     | errors: (none)
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | pilot state: finished 
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | transexitcode: 0
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | exeerrorcode: 0
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | exeerrordiag: 
[2025-11-28 13:23:32] 2025-11-28 18:22:40,291 | INFO     | exitcode: 0
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | exitmsg: OK
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | cpuconsumptiontime: 310840 s
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | nevents: 1000
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | neventsw: 0
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | pid: 16850
[2025-11-28 13:23:32] 2025-11-28 18:22:40,292 | INFO     | pgrp: 16850
[2025-11-28 13:23:32] 2025-11-28 18:22:40,293 | INFO     | corecount: 8
[2025-11-28 13:23:32] 2025-11-28 18:22:40,293 | INFO     | event service: False
[2025-11-28 13:23:32] 2025-11-28 18:22:40,293 | INFO     | sizes: {0: 2284303, 6: 2284565, 11: 2284593, 40072: 2328144, 40075: 2337138, 40078: 2337194, 40084: 2337632}
[2025-11-28 13:23:32] 2025-11-28 18:22:40,293 | INFO     | --------------------------------------------------
[2025-11-28 13:23:32] 2025-11-28 18:22:40,293 | INFO     | 
[2025-11-28 13:23:32] 2025-11-28 18:22:40,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 13:23:32] 2025-11-28 18:22:40,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 13:23:32] 2025-11-28 18:22:40,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,321 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 13:23:32] 2025-11-28 18:22:40,321 | INFO     | job 6892540417 has completed (purged errors)
[2025-11-28 13:23:32] 2025-11-28 18:22:40,321 | INFO     | overall cleanup function is called
[2025-11-28 13:23:32] 2025-11-28 18:22:41,335 | INFO     | --- collectZombieJob: --- 10, [16850]
[2025-11-28 13:23:32] 2025-11-28 18:22:41,335 | INFO     | zombie collector waiting for pid 16850
[2025-11-28 13:23:32] 2025-11-28 18:22:41,335 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 13:23:32] 2025-11-28 18:22:41,335 | INFO     | collected zombie processes
[2025-11-28 13:23:32] 2025-11-28 18:22:41,335 | INFO     | will attempt to kill all subprocesses of pid=16850
[2025-11-28 13:23:32] 2025-11-28 18:22:41,417 | INFO     | process IDs to be killed: [16850] (in reverse order)
[2025-11-28 13:23:32] 2025-11-28 18:22:41,472 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 13:23:32] 2025-11-28 18:22:41,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 13:23:32] 2025-11-28 18:22:41,477 | INFO     | did not find any defunct processes belonging to 16850
[2025-11-28 13:23:32] 2025-11-28 18:22:41,479 | INFO     | did not find any defunct processes belonging to 16850
[2025-11-28 13:23:32] 2025-11-28 18:22:41,482 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 13:23:32] 2025-11-28 18:22:41,482 | INFO     | ready for new job
[2025-11-28 13:23:32] 2025-11-28 18:22:41,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 13:23:32] 2025-11-28 18:22:41,485 | INFO     | ***************************************
[2025-11-28 13:23:32] 2025-11-28 18:22:41,485 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 13:23:32] 2025-11-28 18:22:41,485 | INFO     | ***************************************
[2025-11-28 13:23:32] 2025-11-28 18:22:41,485 | INFO     | 
[2025-11-28 13:23:32] 2025-11-28 18:22:41,486 | INFO     | architecture information:
[2025-11-28 13:23:32] 2025-11-28 18:22:41,487 | INFO     | executing command: cat /etc/os-release
[2025-11-28 13:23:32] 2025-11-28 18:22:41,503 | INFO     | cat /etc/os-release:
[2025-11-28 13:23:32] NAME="CentOS Linux"
[2025-11-28 13:23:32] VERSION="7 (Core)"
[2025-11-28 13:23:32] ID="centos"
[2025-11-28 13:23:32] ID_LIKE="rhel fedora"
[2025-11-28 13:23:32] VERSION_ID="7"
[2025-11-28 13:23:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:23:32] ANSI_COLOR="0;31"
[2025-11-28 13:23:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:23:32] HOME_URL="https://www.centos.org/"
[2025-11-28 13:23:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:23:32] 
[2025-11-28 13:23:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:23:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:23:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:23:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:23:32] 
[2025-11-28 13:23:32] 2025-11-28 18:22:41,504 | INFO     | ***************************************
[2025-11-28 13:23:32] 2025-11-28 18:22:42,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 13:23:32] 2025-11-28 18:22:42,025 | INFO     | sufficient remaining disk space (17467179008 B)
[2025-11-28 13:23:32] 2025-11-28 18:22:42,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:23:32] 2025-11-28 18:22:42,026 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:23:32] 2025-11-28 18:22:42,026 | INFO     | update_server=False
[2025-11-28 13:23:32] 2025-11-28 18:22:42,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:23:32] 2025-11-28 18:22:42,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:23:32] 2025-11-28 18:22:42,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:23:32] 2025-11-28 18:22:42,028 | INFO     | aborting loop
[2025-11-28 13:23:32] 2025-11-28 18:22:42,189 | INFO     | all data control threads have been joined
[2025-11-28 13:23:32] 2025-11-28 18:22:42,417 | INFO     | all payload control threads have been joined
[2025-11-28 13:23:32] 2025-11-28 18:22:43,029 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,033 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,187 | INFO     | all job control threads have been joined
[2025-11-28 13:23:32] 2025-11-28 18:22:43,189 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,195 | INFO     | [data] control thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,386 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,424 | INFO     | [payload] control thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,668 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,791 | INFO     | [job] validate thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:43,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,029 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,136 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,193 | INFO     | [job] control thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,452 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,452 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:44,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:23:32] 2025-11-28 18:22:44,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:23:32] 2025-11-28 18:22:45,844 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:22:48,501 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:23:32] 2025-11-28 18:23:11,784 | INFO     | PID=10477 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 13:23:32] 2025-11-28 18:23:11,785 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:23:32] 2025-11-28 18:23:11,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:23:32] 2025-11-28 18:23:11,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:23:32] 2025-11-28 18:23:25,243 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:23:32] 2025-11-28 18:23:27,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783105103680)>', '<ExcThread(monitor, started 139782344644352)>']
[2025-11-28 13:23:32] 2025-11-28 18:23:27,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:23:32] 2025-11-28 18:23:27,860 | INFO     | [monitor] control thread has ended
[2025-11-28 13:23:32] 2025-11-28 18:23:32,275 | INFO     | all workflow threads have been joined
[2025-11-28 13:23:32] 2025-11-28 18:23:32,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:23:32] 2025-11-28 18:23:32,276 | INFO     | traces error code: 0
[2025-11-28 13:23:32] 2025-11-28 18:23:32,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:23:32] 2025-11-28 18:23:32,382 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:23:32] 2025-11-28 18:23:32,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:23:32] 2025-11-28 18:23:32,391 [wrapper] pilotpid: 10477
[2025-11-28 13:23:32] 2025-11-28 18:23:32,395 [wrapper] Pilot exit status: 0
[2025-11-28 13:23:32] 2025-11-28 18:23:32,411 [wrapper] pandaids: 6892540417
[2025-11-28 13:23:32] 2025-11-28 18:23:32,459 [wrapper] cleanup supervisor_pilot 13212 10478
[2025-11-28 13:23:32] 2025-11-28 18:23:32,463 [wrapper] Test setup, not cleaning
[2025-11-28 13:23:32] 2025-11-28 18:23:32,468 [wrapper] apfmon messages muted
[2025-11-28 13:23:32] 2025-11-28 18:23:32,473 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:23:32] 2025-11-28 18:23:32,477 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:23:32]  *** Error codes and diagnostics ***
[2025-11-28 13:23:32]     "exeErrorCode": 0,
[2025-11-28 13:23:32]     "exeErrorDiag": "",
[2025-11-28 13:23:32]     "pilotErrorCode": 0,
[2025-11-28 13:23:32]     "pilotErrorDiag": "",
[2025-11-28 13:23:32]  *** Listing of results directory ***
[2025-11-28 13:23:32] total 1318768
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-28 13:23:32] -rwx------ 1 boincer umatlas     36292 Nov 19 02:34 runpilot2-wrapper.sh
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:34 queuedata.json
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas       100 Nov 28 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:23:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 28 02:13 run_atlas
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas       105 Nov 28 02:13 job.xml
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas 412014205 Nov 28 02:14 EVNT.47493027._000235.pool.root.1
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas     15120 Nov 28 02:14 start_atlas.sh
[2025-11-28 13:23:32] drwxrwx--x 2 boincer umatlas      4096 Nov 28 02:14 shared
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas    590096 Nov 28 02:14 input.tar.gz
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas         0 Nov 28 02:14 boinc_lockfile
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas      2772 Nov 28 02:14 pandaJob.out
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas    991866 Nov 28 02:14 agis_schedconf.cvmfs.json
[2025-11-28 13:23:32] drwx------ 5 boincer umatlas      4096 Nov 28 02:14 pilot3
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas       533 Nov 28 13:11 boinc_task_state.xml
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas      5913 Nov 28 13:20 init_data.xml
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas 919585760 Nov 28 13:21 HITS.47493029._002309.pool.root.1
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas      1061 Nov 28 13:22 memory_monitor_summary.json
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas   1516240 Nov 28 13:22 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas   1923885 Nov 28 13:22 log.47493029._002309.job.log.tgz.1
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas      8672 Nov 28 13:22 heartbeat.json
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas        95 Nov 28 13:23 pilot_heartbeat.json
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 13:23 boinc_mmap_file
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas        29 Nov 28 13:23 wrapper_checkpoint.txt
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas      4746 Nov 28 13:23 pilotlog.txt
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas   5526287 Nov 28 13:23 log.47493029._002309.job.log.1
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas       353 Nov 28 13:23 output.list
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas       620 Nov 28 13:23 runtime_log
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas   7464960 Nov 28 13:23 result.tar.gz
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas       668 Nov 28 13:23 SUtKDm7srf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGvGKDmT8oN3n.diag
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas      8704 Nov 28 13:23 runtime_log.err
[2025-11-28 13:23:32] -rw-r--r-- 1 boincer umatlas     21395 Nov 28 13:23 stderr.txt
[2025-11-28 13:23:32] HITS file was successfully produced:
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas 919585760 Nov 28 13:21 shared/HITS.pool.root.1
[2025-11-28 13:23:32]  *** Contents of shared directory: ***
[2025-11-28 13:23:32] total 1308292
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas 412014205 Nov 28 02:14 ATLAS.root_0
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas     15120 Nov 28 02:14 start_atlas.sh
[2025-11-28 13:23:32] -rw-r--r-- 2 boincer umatlas    590096 Nov 28 02:14 input.tar.gz
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas 919585760 Nov 28 13:21 HITS.pool.root.1
[2025-11-28 13:23:32] -rw------- 1 boincer umatlas   7464960 Nov 28 13:23 result.tar.gz
13:23:33 (6758): run_atlas exited; CPU time 308917.872343
13:23:33 (6758): called boinc_finish(0)

</stderr_txt>
]]>

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