Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:30:03 (7427): wrapper (7.7.26015): starting
01:30:03 (7427): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 01:30:03] Arguments: --nthreads 12
[2025-11-28 01:30:03] Threads: 12
[2025-11-28 01:30:03] Checking for CVMFS
[2025-11-28 01:30:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:30:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:30:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:30:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:30:03] 2.11.2.0 14820 145548 91848 153400 2 81 12164918 20275200 1 130560 0 70663004 99.955 6304374 36551 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 01:30:03] CVMFS is ok
[2025-11-28 01:30:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:30:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 01:30:03] Further information can be found at the LHC@home message board.
[2025-11-28 01:30:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:30:03] Checking for apptainer binary...
[2025-11-28 01:30:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:30:03] Running /usr/bin/apptainer --version
[2025-11-28 01:30:03] apptainer version 1.3.2-1.el7
[2025-11-28 01:30:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:30:05] c-205-27.aglt2.org
[2025-11-28 01:30:05] apptainer works
[2025-11-28 01:30:05] Set ATHENA_PROC_NUMBER=12
[2025-11-28 01:30:05] Set ATHENA_CORE_NUMBER=12
[2025-11-28 01:30:05] Starting ATLAS job with PandaID=6898987899
[2025-11-28 01:30:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:47:33]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:47:33] 2025-11-28 13:46:58,116 | INFO     | time since job start (26198s) is within the limit (172800.0s)
[2025-11-28 08:47:33] 2025-11-28 13:46:58,300 | INFO     | monitor loop #1962: job 0:6898987899 is in state 'finished'
[2025-11-28 08:47:33] 2025-11-28 13:46:58,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,121 | INFO     | time since job start (26200s) is within the limit (172800.0s)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,416 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 08:47:33] 2025-11-28 13:47:00,419 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,421 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898987899/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,422 | INFO     | extracted standard info from prmon json
[2025-11-28 08:47:33] 2025-11-28 13:47:00,422 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:47:33] 2025-11-28 13:47:00,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:47:33] 2025-11-28 13:47:00,429 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:47:33] 2025-11-28 13:47:00,429 | INFO     | sum of square deviations: 24481966738.536083
[2025-11-28 08:47:33] 2025-11-28 13:47:00,433 | INFO     | sum of deviations: 326796370639.6547
[2025-11-28 08:47:33] 2025-11-28 13:47:00,433 | INFO     | mean x: 1764324504.1771562
[2025-11-28 08:47:33] 2025-11-28 13:47:00,433 | INFO     | mean y: 3442058.372960373
[2025-11-28 08:47:33] 2025-11-28 13:47:00,433 | INFO     | intersect: -23547559817.964844
[2025-11-28 08:47:33] 2025-11-28 13:47:00,434 | INFO     | chi2: 5.368482517416157
[2025-11-28 08:47:33] 2025-11-28 13:47:00,434 | INFO     | sum of square deviations: 23635908938.377342
[2025-11-28 08:47:33] 2025-11-28 13:47:00,438 | INFO     | sum of deviations: 475235539638.6797
[2025-11-28 08:47:33] 2025-11-28 13:47:00,438 | INFO     | mean x: 1764324351.6792452
[2025-11-28 08:47:33] 2025-11-28 13:47:00,438 | INFO     | mean y: 3468779.9976415094
[2025-11-28 08:47:33] 2025-11-28 13:47:00,439 | INFO     | intersect: -35470928991.37542
[2025-11-28 08:47:33] 2025-11-28 13:47:00,439 | INFO     | chi2: 2.844616971635512
[2025-11-28 08:47:33] 2025-11-28 13:47:00,439 | INFO     | current chi2=2.844616971635512 (change=47.01264347220746 %)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,440 | INFO     | sum of square deviations: 22809572438.214733
[2025-11-28 08:47:33] 2025-11-28 13:47:00,443 | INFO     | sum of deviations: 529257337257.0642
[2025-11-28 08:47:33] 2025-11-28 13:47:00,443 | INFO     | mean x: 1764324199.1813843
[2025-11-28 08:47:33] 2025-11-28 13:47:00,444 | INFO     | mean y: 3478714.8544152747
[2025-11-28 08:47:33] 2025-11-28 13:47:00,444 | INFO     | intersect: -40934663823.60463
[2025-11-28 08:47:33] 2025-11-28 13:47:00,444 | INFO     | chi2: 2.347549263098287
[2025-11-28 08:47:33] 2025-11-28 13:47:00,444 | INFO     | current chi2=2.347549263098287 (change=17.473976760092093 %)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,445 | INFO     | right removable region: 418
[2025-11-28 08:47:33] 2025-11-28 13:47:00,445 | INFO     | sum of square deviations: 23635888624.73356
[2025-11-28 08:47:33] 2025-11-28 13:47:00,449 | INFO     | sum of deviations: 193997092178.26392
[2025-11-28 08:47:33] 2025-11-28 13:47:00,449 | INFO     | mean x: 1764324656.6768868
[2025-11-28 08:47:33] 2025-11-28 13:47:00,449 | INFO     | mean y: 3465909.169811321
[2025-11-28 08:47:33] 2025-11-28 13:47:00,449 | INFO     | intersect: -14477641972.492844
[2025-11-28 08:47:33] 2025-11-28 13:47:00,450 | INFO     | chi2: 3.1617371491735327
[2025-11-28 08:47:33] 2025-11-28 13:47:00,450 | INFO     | current chi2=3.1617371491735327 (change=41.10557054220841 %)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,450 | INFO     | sum of square deviations: 22809531688.9307
[2025-11-28 08:47:33] 2025-11-28 13:47:00,454 | INFO     | sum of deviations: 160186689283.32
[2025-11-28 08:47:33] 2025-11-28 13:47:00,454 | INFO     | mean x: 1764324809.176611
[2025-11-28 08:47:33] 2025-11-28 13:47:00,454 | INFO     | mean y: 3472141.5632458236
[2025-11-28 08:47:33] 2025-11-28 13:47:00,454 | INFO     | intersect: -12387021177.489891
[2025-11-28 08:47:33] 2025-11-28 13:47:00,455 | INFO     | chi2: 3.094503209110432
[2025-11-28 08:47:33] 2025-11-28 13:47:00,455 | INFO     | current chi2=3.094503209110432 (change=2.1264873356305185 %)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,455 | INFO     | left removable region: 20
[2025-11-28 08:47:33] 2025-11-28 13:47:00,456 | INFO     | sum of square deviations: 19548958986.110558
[2025-11-28 08:47:33] 2025-11-28 13:47:00,459 | INFO     | sum of deviations: 320672809697.2813
[2025-11-28 08:47:33] 2025-11-28 13:47:00,459 | INFO     | mean x: 1764324778.683417
[2025-11-28 08:47:33] 2025-11-28 13:47:00,459 | INFO     | mean y: 3517898.057788945
[2025-11-28 08:47:33] 2025-11-28 13:47:00,459 | INFO     | intersect: -28937715463.827255
[2025-11-28 08:47:33] 2025-11-28 13:47:00,460 | INFO     | chi2: 0.02800115042735303
[2025-11-28 08:47:33] 2025-11-28 13:47:00,460 | INFO     | current memory leak: 16.40 B/s (using 398 data points, chi2=0.03)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,460 | INFO     | could have reported an average CPU frequency of 2405 MHz (18 samples)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | ..............................
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . Timing measurements:
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . get job = 0 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . initial setup = 2 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . payload setup = 7 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . stage-in = 0 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . payload execution = 26163 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . stage-out = 3 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,461 | INFO     | . log creation = 0 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,462 | INFO     | ..............................
[2025-11-28 08:47:33] 2025-11-28 13:47:00,549 | INFO     | 
[2025-11-28 08:47:33] 2025-11-28 13:47:00,550 | INFO     | job summary report
[2025-11-28 08:47:33] 2025-11-28 13:47:00,550 | INFO     | --------------------------------------------------
[2025-11-28 08:47:33] 2025-11-28 13:47:00,550 | INFO     | PanDA job id: 6898987899
[2025-11-28 08:47:33] 2025-11-28 13:47:00,550 | INFO     | task id: 47556161
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | errors: (none)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | pilot state: finished 
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | transexitcode: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | exeerrorcode: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,551 | INFO     | exeerrordiag: 
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | exitcode: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | exitmsg: OK
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | cpuconsumptiontime: 299846 s
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | nevents: 1000
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | neventsw: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,552 | INFO     | pid: 17487
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | pgrp: 17487
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | corecount: 12
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | event service: False
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 26174: 2322006, 26178: 2331056, 26184: 2331246}
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | --------------------------------------------------
[2025-11-28 08:47:33] 2025-11-28 13:47:00,553 | INFO     | 
[2025-11-28 08:47:33] 2025-11-28 13:47:00,554 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 08:47:33] 2025-11-28 13:47:00,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:47:33] 2025-11-28 13:47:00,583 | INFO     | job 6898987899 has completed (purged errors)
[2025-11-28 08:47:33] 2025-11-28 13:47:00,584 | INFO     | overall cleanup function is called
[2025-11-28 08:47:33] 2025-11-28 13:47:01,600 | INFO     | --- collectZombieJob: --- 10, [17487]
[2025-11-28 08:47:33] 2025-11-28 13:47:01,601 | INFO     | zombie collector waiting for pid 17487
[2025-11-28 08:47:33] 2025-11-28 13:47:01,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:47:33] 2025-11-28 13:47:01,601 | INFO     | collected zombie processes
[2025-11-28 08:47:33] 2025-11-28 13:47:01,601 | INFO     | will attempt to kill all subprocesses of pid=17487
[2025-11-28 08:47:33] 2025-11-28 13:47:01,694 | INFO     | process IDs to be killed: [17487] (in reverse order)
[2025-11-28 08:47:33] 2025-11-28 13:47:01,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:47:33] 2025-11-28 13:47:01,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:47:33] 2025-11-28 13:47:01,748 | INFO     | did not find any defunct processes belonging to 17487
[2025-11-28 08:47:33] 2025-11-28 13:47:01,750 | INFO     | did not find any defunct processes belonging to 17487
[2025-11-28 08:47:33] 2025-11-28 13:47:01,752 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:47:33] 2025-11-28 13:47:01,752 | INFO     | ready for new job
[2025-11-28 08:47:33] 2025-11-28 13:47:01,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:47:33] 2025-11-28 13:47:01,755 | INFO     | ***************************************
[2025-11-28 08:47:33] 2025-11-28 13:47:01,755 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:47:33] 2025-11-28 13:47:01,755 | INFO     | ***************************************
[2025-11-28 08:47:33] 2025-11-28 13:47:01,755 | INFO     | 
[2025-11-28 08:47:33] 2025-11-28 13:47:01,755 | INFO     | architecture information:
[2025-11-28 08:47:33] 2025-11-28 13:47:01,756 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:47:33] 2025-11-28 13:47:01,771 | INFO     | cat /etc/os-release:
[2025-11-28 08:47:33] NAME="CentOS Linux"
[2025-11-28 08:47:33] VERSION="7 (Core)"
[2025-11-28 08:47:33] ID="centos"
[2025-11-28 08:47:33] ID_LIKE="rhel fedora"
[2025-11-28 08:47:33] VERSION_ID="7"
[2025-11-28 08:47:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:47:33] ANSI_COLOR="0;31"
[2025-11-28 08:47:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:47:33] HOME_URL="https://www.centos.org/"
[2025-11-28 08:47:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:47:33] 
[2025-11-28 08:47:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:47:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:47:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:47:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:47:33] 
[2025-11-28 08:47:33] 2025-11-28 13:47:01,772 | INFO     | ***************************************
[2025-11-28 08:47:33] 2025-11-28 13:47:02,274 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 08:47:33] 2025-11-28 13:47:02,292 | INFO     | sufficient remaining disk space (28240248832 B)
[2025-11-28 08:47:33] 2025-11-28 13:47:02,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:47:33] 2025-11-28 13:47:02,293 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:47:33] 2025-11-28 13:47:02,293 | INFO     | update_server=False
[2025-11-28 08:47:33] 2025-11-28 13:47:02,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:47:33] 2025-11-28 13:47:02,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:47:33] 2025-11-28 13:47:02,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:47:33] 2025-11-28 13:47:02,294 | INFO     | aborting loop
[2025-11-28 08:47:33] 2025-11-28 13:47:02,356 | INFO     | all data control threads have been joined
[2025-11-28 08:47:33] 2025-11-28 13:47:02,505 | INFO     | all job control threads have been joined
[2025-11-28 08:47:33] 2025-11-28 13:47:02,587 | INFO     | all payload control threads have been joined
[2025-11-28 08:47:33] 2025-11-28 13:47:02,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:47:33] 2025-11-28 13:47:03,061 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:47:33] 2025-11-28 13:47:03,297 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,298 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,299 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,318 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,338 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,359 | INFO     | [data] control thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,511 | INFO     | [job] control thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,592 | INFO     | [payload] control thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:03,765 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,029 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,250 | INFO     | [job] validate thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,668 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,673 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,752 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:04,958 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:05,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:47:33] 2025-11-28 13:47:09,635 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:47:33] 2025-11-28 13:47:10,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388809140032)>', '<ExcThread(monitor, started 140387691775744)>']
[2025-11-28 08:47:33] 2025-11-28 13:47:15,636 | INFO     | all workflow threads have been joined
[2025-11-28 08:47:33] 2025-11-28 13:47:15,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:47:33] 2025-11-28 13:47:15,636 | INFO     | traces error code: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:15,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:47:33] 2025-11-28 13:47:33,298 | INFO     | PID=11105 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 08:47:33] 2025-11-28 13:47:33,299 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:47:33] 2025-11-28 13:47:33,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:47:33] 2025-11-28 13:47:33,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:47:33] 2025-11-28 13:47:33,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:47:33] 2025-11-28 13:47:33,299 | INFO     | [monitor] control thread has ended
[2025-11-28 08:47:33] 2025-11-28 13:47:33,388 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:47:33] 2025-11-28 13:47:33,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:47:33] 2025-11-28 13:47:33,396 [wrapper] pilotpid: 11105
[2025-11-28 08:47:33] 2025-11-28 13:47:33,400 [wrapper] Pilot exit status: 0
[2025-11-28 08:47:33] 2025-11-28 13:47:33,415 [wrapper] pandaids: 6898987899
[2025-11-28 08:47:33] 2025-11-28 13:47:33,454 [wrapper] cleanup supervisor_pilot   359 11106
[2025-11-28 08:47:33] 2025-11-28 13:47:33,458 [wrapper] Test setup, not cleaning
[2025-11-28 08:47:33] 2025-11-28 13:47:33,462 [wrapper] apfmon messages muted
[2025-11-28 08:47:33] 2025-11-28 13:47:33,465 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:47:33] 2025-11-28 13:47:33,469 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:47:33]  *** Error codes and diagnostics ***
[2025-11-28 08:47:33]     "exeErrorCode": 0,
[2025-11-28 08:47:33]     "exeErrorDiag": "",
[2025-11-28 08:47:33]     "pilotErrorCode": 0,
[2025-11-28 08:47:33]     "pilotErrorDiag": "",
[2025-11-28 08:47:33]  *** Listing of results directory ***
[2025-11-28 08:47:33] total 1317340
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 19:30 pilot3.tar.gz
[2025-11-28 08:47:33] -rwx------ 1 boincer umatlas     36292 Nov 26 19:33 runpilot2-wrapper.sh
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 19:33 queuedata.json
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas       100 Nov 28 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:47:33] -rwxr-xr-x 1 boincer umatlas      7986 Nov 28 01:29 run_atlas
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas       105 Nov 28 01:29 job.xml
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas 410931847 Nov 28 01:30 EVNT.47483658._002761.pool.root.1
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 01:30 start_atlas.sh
[2025-11-28 08:47:33] drwxrwx--x 2 boincer umatlas      4096 Nov 28 01:30 shared
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas    590102 Nov 28 01:30 input.tar.gz
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas         0 Nov 28 01:30 boinc_lockfile
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas      2786 Nov 28 01:30 pandaJob.out
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas        57 Nov 28 01:30 setup.sh.local
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas    991866 Nov 28 01:30 agis_schedconf.cvmfs.json
[2025-11-28 08:47:33] drwx------ 5 boincer umatlas      4096 Nov 28 01:30 pilot3
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas       532 Nov 28 08:36 boinc_task_state.xml
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas      5956 Nov 28 08:38 init_data.xml
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas 922403332 Nov 28 08:46 HITS.47556161._007435.pool.root.1
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas      1064 Nov 28 08:46 memory_monitor_summary.json
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas   1516240 Nov 28 08:46 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas   2186516 Nov 28 08:46 log.47556161._007435.job.log.tgz.1
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas      8668 Nov 28 08:47 heartbeat.json
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas        29 Nov 28 08:47 wrapper_checkpoint.txt
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 08:47 boinc_mmap_file
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas        95 Nov 28 08:47 pilot_heartbeat.json
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas       745 Nov 28 08:47 pilotlog.txt
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas   3665463 Nov 28 08:47 log.47556161._007435.job.log.1
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas       353 Nov 28 08:47 output.list
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas       620 Nov 28 08:47 runtime_log
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas   5867520 Nov 28 08:47 result.tar.gz
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas      9345 Nov 28 08:47 runtime_log.err
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas       670 Nov 28 08:47 3x3LDmM8ei8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkKKKDm1uYG9m.diag
[2025-11-28 08:47:33] -rw-r--r-- 1 boincer umatlas     21289 Nov 28 08:47 stderr.txt
[2025-11-28 08:47:33] HITS file was successfully produced:
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas 922403332 Nov 28 08:46 shared/HITS.pool.root.1
[2025-11-28 08:47:33]  *** Contents of shared directory: ***
[2025-11-28 08:47:33] total 1308428
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas 410931847 Nov 28 01:30 ATLAS.root_0
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 01:30 start_atlas.sh
[2025-11-28 08:47:33] -rw-r--r-- 2 boincer umatlas    590102 Nov 28 01:30 input.tar.gz
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas 922403332 Nov 28 08:46 HITS.pool.root.1
[2025-11-28 08:47:33] -rw------- 1 boincer umatlas   5867520 Nov 28 08:47 result.tar.gz
08:47:35 (7427): run_atlas exited; CPU time 293040.499291
08:47:35 (7427): called boinc_finish(0)

</stderr_txt>
]]>

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