Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
01:21:34 (3124825): wrapper (7.7.26015): starting
01:21:34 (3124825): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 01:21:34] Arguments: --nthreads 4
[2025-11-28 01:21:34] Threads: 4
[2025-11-28 01:21:34] Checking for CVMFS
[2025-11-28 01:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:21:34] 2.13.2.0 774864 6821 57856 153403 3 81 3692765 4096001 5100 130560 0 19893720 99.969 672200 1248 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-28 01:21:34] CVMFS is ok
[2025-11-28 01:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:21:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-28 01:21:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-28 01:21:34] Further information can be found at the LHC@home message board.
[2025-11-28 01:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:21:34] Checking for apptainer binary...
[2025-11-28 01:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:21:34] Running /usr/bin/apptainer --version
[2025-11-28 01:21:34] apptainer version 1.4.3
[2025-11-28 01:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:21:34] msi670e
[2025-11-28 01:21:34] apptainer works
[2025-11-28 01:21:34] Set ATHENA_PROC_NUMBER=4
[2025-11-28 01:21:34] Set ATHENA_CORE_NUMBER=4
[2025-11-28 01:21:34] Starting ATLAS job with PandaID=6898987931
[2025-11-28 01:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:59:32]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:59:32] 2025-11-28 14:58:59,353 | INFO     | time since job start (23838s) is within the limit (172800.0s)
[2025-11-28 07:59:32] 2025-11-28 14:58:59,363 | INFO     | monitor loop #1803: job 0:6898987931 is in state 'finished'
[2025-11-28 07:59:32] 2025-11-28 14:58:59,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,657 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 07:59:32] 2025-11-28 14:59:00,660 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4822.113375
[2025-11-28 07:59:32] 2025-11-28 14:59:00,662 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6898987931/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,663 | INFO     | extracted standard info from prmon json
[2025-11-28 07:59:32] 2025-11-28 14:59:00,663 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:59:32] 2025-11-28 14:59:00,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:59:32] 2025-11-28 14:59:00,666 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:59:32] 2025-11-28 14:59:00,666 | INFO     | sum of square deviations: 18535566140.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,667 | INFO     | sum of deviations: 31280755836.000004
[2025-11-28 07:59:32] 2025-11-28 14:59:00,667 | INFO     | mean x: 1764330014.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,667 | INFO     | mean y: 2260009.1611253195
[2025-11-28 07:59:32] 2025-11-28 14:59:00,668 | INFO     | intersect: -2975236117.216187
[2025-11-28 07:59:32] 2025-11-28 14:59:00,668 | INFO     | chi2: 3.108908472386113
[2025-11-28 07:59:32] 2025-11-28 14:59:00,668 | INFO     | sum of square deviations: 17833534372.5
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | sum of deviations: 91469584271.49998
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | mean x: 1764329861.5
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | mean y: 2273023.914507772
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | intersect: -9047112004.21857
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | chi2: 1.6152366196791856
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | current chi2=1.6152366196791856 (change=48.044896334967426 %)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,670 | INFO     | sum of square deviations: 17149456430.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | sum of deviations: 88588850762.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | mean x: 1764329709.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | mean y: 2272381.7034120737
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | intersect: -9111715686.871416
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | chi2: 1.6155137252544787
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | current chi2=1.6155137252544787 (change=-0.01715572640670276 %)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | right removable region: 380
[2025-11-28 07:59:32] 2025-11-28 14:59:00,672 | INFO     | sum of square deviations: 17833534372.5
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | sum of deviations: -24781072185.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | mean x: 1764330166.5
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | mean y: 2272113.922279793
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | intersect: 2453945029.7314186
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | chi2: 1.6009299165549913
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | current chi2=1.6009299165549913 (change=48.50508045589826 %)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,674 | INFO     | sum of square deviations: 17149456430.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | sum of deviations: -26368058677.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | mean x: 1764330319.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | mean y: 2272466.304461942
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | intersect: 2715009489.013824
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | chi2: 1.6002322140582204
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | current chi2=1.6002322140582204 (change=0.043581076820170636 %)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | left removable region: 20
[2025-11-28 07:59:32] 2025-11-28 14:59:00,676 | INFO     | sum of square deviations: 14467136370.0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | sum of deviations: 32587086573.999992
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | mean x: 1764330288.5
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | mean y: 2284928.2666666666
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | intersect: -3971852204.753244
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | chi2: 0.08415299474914456
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | current memory leak: 2.25 B/s (using 360 data points, chi2=0.08)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | could have reported an average CPU frequency of 4921 MHz (17 samples)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | ..............................
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . Timing measurements:
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . get job = 0 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . initial setup = 2 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . payload setup = 2 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . stage-in = 0 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . payload execution = 23805 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,678 | INFO     | . stage-out = 7 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,679 | INFO     | . log creation = 0 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,679 | INFO     | ..............................
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | 
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | job summary report
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | --------------------------------------------------
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | PanDA job id: 6898987931
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | task id: 47556173
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | errors: (none)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | pilot state: finished 
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | transexitcode: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | exeerrorcode: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | exeerrordiag: 
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | exitcode: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | exitmsg: OK
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | cpuconsumptiontime: 94137 s
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | nevents: 1000
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | neventsw: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | pid: 3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | pgrp: 3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | corecount: 4
[2025-11-28 07:59:32] 2025-11-28 14:59:00,879 | INFO     | event service: False
[2025-11-28 07:59:32] 2025-11-28 14:59:00,880 | INFO     | sizes: {0: 2284151, 1: 2284350, 3: 2284612, 11: 2284640, 23811: 2320852, 23812: 2320851, 23820: 2330043, 23823: 2330099, 23827: 2330409}
[2025-11-28 07:59:32] 2025-11-28 14:59:00,880 | INFO     | --------------------------------------------------
[2025-11-28 07:59:32] 2025-11-28 14:59:00,880 | INFO     | 
[2025-11-28 07:59:32] 2025-11-28 14:59:00,880 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | job 6898987931 has completed (purged errors)
[2025-11-28 07:59:32] 2025-11-28 14:59:00,893 | INFO     | overall cleanup function is called
[2025-11-28 07:59:32] 2025-11-28 14:59:01,902 | INFO     | --- collectZombieJob: --- 10, [3135345]
[2025-11-28 07:59:32] 2025-11-28 14:59:01,902 | INFO     | zombie collector waiting for pid 3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:01,902 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:59:32] 2025-11-28 14:59:01,902 | INFO     | collected zombie processes
[2025-11-28 07:59:32] 2025-11-28 14:59:01,902 | INFO     | will attempt to kill all subprocesses of pid=3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:01,987 | INFO     | process IDs to be killed: [3135345] (in reverse order)
[2025-11-28 07:59:32] 2025-11-28 14:59:02,024 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:59:32] 2025-11-28 14:59:02,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:59:32] 2025-11-28 14:59:02,028 | INFO     | did not find any defunct processes belonging to 3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:02,030 | INFO     | did not find any defunct processes belonging to 3135345
[2025-11-28 07:59:32] 2025-11-28 14:59:02,031 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:59:32] 2025-11-28 14:59:02,031 | INFO     | ready for new job
[2025-11-28 07:59:32] 2025-11-28 14:59:02,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:59:32] 2025-11-28 14:59:02,032 | INFO     | ***************************************
[2025-11-28 07:59:32] 2025-11-28 14:59:02,033 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:59:32] 2025-11-28 14:59:02,033 | INFO     | ***************************************
[2025-11-28 07:59:32] 2025-11-28 14:59:02,033 | INFO     | 
[2025-11-28 07:59:32] 2025-11-28 14:59:02,033 | INFO     | architecture information:
[2025-11-28 07:59:32] 2025-11-28 14:59:02,034 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:59:32] 2025-11-28 14:59:02,044 | INFO     | cat /etc/os-release:
[2025-11-28 07:59:32] NAME="CentOS Linux"
[2025-11-28 07:59:32] VERSION="7 (Core)"
[2025-11-28 07:59:32] ID="centos"
[2025-11-28 07:59:32] ID_LIKE="rhel fedora"
[2025-11-28 07:59:32] VERSION_ID="7"
[2025-11-28 07:59:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:59:32] ANSI_COLOR="0;31"
[2025-11-28 07:59:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:59:32] HOME_URL="https://www.centos.org/"
[2025-11-28 07:59:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:59:32] 
[2025-11-28 07:59:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:59:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:59:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:59:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:59:32] 
[2025-11-28 07:59:32] 2025-11-28 14:59:02,044 | INFO     | ***************************************
[2025-11-28 07:59:32] 2025-11-28 14:59:02,546 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-11-28 07:59:32] 2025-11-28 14:59:02,555 | INFO     | sufficient remaining disk space (436775944192 B)
[2025-11-28 07:59:32] 2025-11-28 14:59:02,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:59:32] 2025-11-28 14:59:02,555 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:59:32] 2025-11-28 14:59:02,556 | INFO     | update_server=False
[2025-11-28 07:59:32] 2025-11-28 14:59:02,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:59:32] 2025-11-28 14:59:02,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:59:32] 2025-11-28 14:59:02,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:59:32] 2025-11-28 14:59:02,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:59:32] 2025-11-28 14:59:02,871 | INFO     | aborting loop
[2025-11-28 07:59:32] 2025-11-28 14:59:02,928 | INFO     | all data control threads have been joined
[2025-11-28 07:59:32] 2025-11-28 14:59:03,560 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,560 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,576 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,591 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,696 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:59:32] 2025-11-28 14:59:03,873 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,916 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,929 | INFO     | [data] control thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:03,934 | INFO     | all payload control threads have been joined
[2025-11-28 07:59:32] 2025-11-28 14:59:03,997 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:04,106 | INFO     | all job control threads have been joined
[2025-11-28 07:59:32] 2025-11-28 14:59:04,116 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:04,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:04,938 | INFO     | [payload] control thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:04,974 | INFO     | [job] validate thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:05,111 | INFO     | [job] control thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:05,840 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:06,561 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:59:32] 2025-11-28 14:59:20,028 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:59:32] 2025-11-28 14:59:21,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130947257050944)>', '<ExcThread(monitor, started 130946632247040)>']
[2025-11-28 07:59:32] 2025-11-28 14:59:26,469 | INFO     | all workflow threads have been joined
[2025-11-28 07:59:32] 2025-11-28 14:59:26,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:59:32] 2025-11-28 14:59:26,469 | INFO     | traces error code: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:26,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:59:32] 2025-11-28 14:59:32,504 | INFO     | PID=3128682 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:59:32] 2025-11-28 14:59:32,505 | INFO     | .. there are 7 such processes running
[2025-11-28 07:59:32] 2025-11-28 14:59:32,505 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:59:32] 2025-11-28 14:59:32,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:59:32] 2025-11-28 14:59:32,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:59:32] 2025-11-28 14:59:32,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:59:32] 2025-11-28 14:59:32,506 | INFO     | [monitor] control thread has ended
[2025-11-28 07:59:32] 2025-11-28 14:59:32,558 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:59:32] 2025-11-28 14:59:32,559 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:59:32] 2025-11-28 14:59:32,560 [wrapper] pilotpid: 3128682
[2025-11-28 07:59:32] 2025-11-28 14:59:32,562 [wrapper] Pilot exit status: 0
[2025-11-28 07:59:32] 2025-11-28 14:59:32,567 [wrapper] pandaids: 6898987931
[2025-11-28 07:59:32] 2025-11-28 14:59:32,589 [wrapper] cleanup supervisor_pilot 3498441 3128683
[2025-11-28 07:59:32] 2025-11-28 14:59:32,590 [wrapper] Test setup, not cleaning
[2025-11-28 07:59:32] 2025-11-28 14:59:32,592 [wrapper] apfmon messages muted
[2025-11-28 07:59:32] 2025-11-28 14:59:32,593 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:59:32] 2025-11-28 14:59:32,594 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:59:32]  *** Error codes and diagnostics ***
[2025-11-28 07:59:32]     "exeErrorCode": 0,
[2025-11-28 07:59:32]     "exeErrorDiag": "",
[2025-11-28 07:59:32]     "pilotErrorCode": 0,
[2025-11-28 07:59:32]     "pilotErrorDiag": "",
[2025-11-28 07:59:32]  *** Listing of results directory ***
[2025-11-28 07:59:32] total 1297296
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:30 pilot3.tar.gz
[2025-11-28 07:59:32] -rwx------ 1 boinc boinc     36292 Nov 26 17:33 runpilot2-wrapper.sh
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:33 queuedata.json
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc       100 Nov 28 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:59:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 01:21 run_atlas
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc       105 Nov 28 01:21 job.xml
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc     15847 Nov 28 01:21 start_atlas.sh
[2025-11-28 07:59:32] drwxrwx--x 2 boinc boinc      4096 Nov 28 01:21 shared
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc    590100 Nov 28 01:21 input.tar.gz
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc      9949 Nov 28 01:21 init_data.xml
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc 408572670 Nov 28 01:21 EVNT.47483658._003242.pool.root.1
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc         0 Nov 28 01:21 boinc_lockfile
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc      2786 Nov 28 01:21 pandaJob.out
[2025-11-28 07:59:32] -rw------- 1 boinc boinc    991858 Nov 28 01:21 agis_schedconf.cvmfs.json
[2025-11-28 07:59:32] drwx------ 5 boinc boinc      4096 Nov 28 01:21 pilot3
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc       531 Nov 28 07:53 boinc_task_state.xml
[2025-11-28 07:59:32] -rw------- 1 boinc boinc 906551381 Nov 28 07:58 HITS.47556173._001983.pool.root.1
[2025-11-28 07:59:32] -rw------- 1 boinc boinc      1031 Nov 28 07:58 memory_monitor_summary.json
[2025-11-28 07:59:32] -rw------- 1 boinc boinc   1516240 Nov 28 07:58 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:59:32] -rw------- 1 boinc boinc   1233834 Nov 28 07:58 log.47556173._001983.job.log.tgz.1
[2025-11-28 07:59:32] -rw------- 1 boinc boinc      8542 Nov 28 07:59 heartbeat.json
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc      8192 Nov 28 07:59 boinc_mmap_file
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc        28 Nov 28 07:59 wrapper_checkpoint.txt
[2025-11-28 07:59:32] -rw------- 1 boinc boinc       822 Nov 28 07:59 pilotlog.txt
[2025-11-28 07:59:32] -rw------- 1 boinc boinc        95 Nov 28 07:59 pilot_heartbeat.json
[2025-11-28 07:59:32] -rw------- 1 boinc boinc   3459038 Nov 28 07:59 log.47556173._001983.job.log.1
[2025-11-28 07:59:32] -rw------- 1 boinc boinc       353 Nov 28 07:59 output.list
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc       620 Nov 28 07:59 runtime_log
[2025-11-28 07:59:32] -rw------- 1 boinc boinc   4710400 Nov 28 07:59 result.tar.gz
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc      8920 Nov 28 07:59 runtime_log.err
[2025-11-28 07:59:32] -rw------- 1 boinc boinc       660 Nov 28 07:59 pKoMDmM8ei8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyKKKDmIPvFSo.diag
[2025-11-28 07:59:32] -rw-r--r-- 1 boinc boinc     21357 Nov 28 07:59 stderr.txt
[2025-11-28 07:59:32] HITS file was successfully produced:
[2025-11-28 07:59:32] -rw------- 1 boinc boinc 906551381 Nov 28 07:58 shared/HITS.pool.root.1
[2025-11-28 07:59:32]  *** Contents of shared directory: ***
[2025-11-28 07:59:32] total 1289512
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc     15847 Nov 28 01:21 start_atlas.sh
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc    590100 Nov 28 01:21 input.tar.gz
[2025-11-28 07:59:32] -rw-r--r-- 2 boinc boinc 408572670 Nov 28 01:21 ATLAS.root_0
[2025-11-28 07:59:32] -rw------- 1 boinc boinc 906551381 Nov 28 07:58 HITS.pool.root.1
[2025-11-28 07:59:32] -rw------- 1 boinc boinc   4710400 Nov 28 07:59 result.tar.gz
07:59:33 (3124825): run_atlas exited; CPU time 94103.696409
07:59:33 (3124825): called boinc_finish(0)

</stderr_txt>
]]>

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