Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:39:14 (25626): wrapper (7.7.26015): starting
01:39:14 (25626): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 01:39:14] Arguments: --nthreads 12
[2025-11-28 01:39:14] Threads: 12
[2025-11-28 01:39:14] Checking for CVMFS
[2025-11-28 01:39:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:39:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:39:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:39:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:39:14] 2.11.2.0 30551 120154 93820 153400 0 81 13590306 20275200 1 130560 0 53344607 99.918 6500567 29167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 01:39:14] CVMFS is ok
[2025-11-28 01:39:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:39:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 01:39:14] Further information can be found at the LHC@home message board.
[2025-11-28 01:39:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:39:14] Checking for apptainer binary...
[2025-11-28 01:39:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:39:14] Running /usr/bin/apptainer --version
[2025-11-28 01:39:14] apptainer version 1.3.2-1.el7
[2025-11-28 01:39:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:39:15] c-205-16.aglt2.org
[2025-11-28 01:39:15] apptainer works
[2025-11-28 01:39:15] Set ATHENA_PROC_NUMBER=12
[2025-11-28 01:39:15] Set ATHENA_CORE_NUMBER=12
[2025-11-28 01:39:15] Starting ATLAS job with PandaID=6898377009
[2025-11-28 01:39:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:45:21 (27404): wrapper (7.7.26015): starting
02:45:21 (27404): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 02:45:21] Arguments: --nthreads 12
[2025-11-28 02:45:21] Threads: 12
[2025-11-28 02:45:21] This job has been restarted, cleaning up previous attempt
[2025-11-28 02:45:21] Checking for CVMFS
[2025-11-28 02:45:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 02:45:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 02:45:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 02:45:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 02:45:22] 2.11.2.0 30551 120220 95656 153402 2 56 13683963 20275200 1 130560 0 53427997 99.918 6501952 29169 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 02:45:22] CVMFS is ok
[2025-11-28 02:45:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 02:45:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 02:45:22] Further information can be found at the LHC@home message board.
[2025-11-28 02:45:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 02:45:22] Checking for apptainer binary...
[2025-11-28 02:45:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 02:45:22] Running /usr/bin/apptainer --version
[2025-11-28 02:45:22] apptainer version 1.3.2-1.el7
[2025-11-28 02:45:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 02:45:23] c-205-16.aglt2.org
[2025-11-28 02:45:23] apptainer works
[2025-11-28 02:45:23] Set ATHENA_PROC_NUMBER=12
[2025-11-28 02:45:23] Set ATHENA_CORE_NUMBER=12
[2025-11-28 02:45:23] Starting ATLAS job with PandaID=6898377009
[2025-11-28 02:45:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 09:59:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 09:59:26] 2025-11-28 14:58:51,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:59:26] 2025-11-28 14:58:52,992 | INFO     | time since job start (25995s) is within the limit (172800.0s)
[2025-11-28 09:59:26] 2025-11-28 14:58:53,735 | INFO     | monitor loop #1947: job 0:6898377009 is in state 'finished'
[2025-11-28 09:59:26] 2025-11-28 14:58:53,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,411 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 09:59:26] 2025-11-28 14:58:54,414 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-11-28 09:59:26] 2025-11-28 14:58:54,417 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898377009/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,417 | INFO     | extracted standard info from prmon json
[2025-11-28 09:59:26] 2025-11-28 14:58:54,417 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 09:59:26] 2025-11-28 14:58:54,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 09:59:26] 2025-11-28 14:58:54,426 | INFO     | fitting pss+swap vs Time
[2025-11-28 09:59:26] 2025-11-28 14:58:54,426 | INFO     | sum of square deviations: 23972040586.697243
[2025-11-28 09:59:26] 2025-11-28 14:58:54,430 | INFO     | sum of deviations: 390666842235.54913
[2025-11-28 09:59:26] 2025-11-28 14:58:54,430 | INFO     | mean x: 1764328929.7816901
[2025-11-28 09:59:26] 2025-11-28 14:58:54,430 | INFO     | mean y: 3432479.0704225353
[2025-11-28 09:59:26] 2025-11-28 14:58:54,430 | INFO     | intersect: -28749431056.674263
[2025-11-28 09:59:26] 2025-11-28 14:58:54,431 | INFO     | chi2: 6.421072468277634
[2025-11-28 09:59:26] 2025-11-28 14:58:54,431 | INFO     | sum of square deviations: 23137856893.795616
[2025-11-28 09:59:26] 2025-11-28 14:58:54,435 | INFO     | sum of deviations: 569083265977.8463
[2025-11-28 09:59:26] 2025-11-28 14:58:54,435 | INFO     | mean x: 1764328777.2850356
[2025-11-28 09:59:26] 2025-11-28 14:58:54,435 | INFO     | mean y: 3465064.9596199524
[2025-11-28 09:59:26] 2025-11-28 14:58:54,436 | INFO     | intersect: -43390786504.86935
[2025-11-28 09:59:26] 2025-11-28 14:58:54,436 | INFO     | chi2: 2.8433751336056283
[2025-11-28 09:59:26] 2025-11-28 14:58:54,436 | INFO     | current chi2=2.8433751336056283 (change=55.71806504827806 %)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,437 | INFO     | sum of square deviations: 22323203966.528893
[2025-11-28 09:59:26] 2025-11-28 14:58:54,440 | INFO     | sum of deviations: 591250339410.3512
[2025-11-28 09:59:26] 2025-11-28 14:58:54,441 | INFO     | mean x: 1764328624.7836537
[2025-11-28 09:59:26] 2025-11-28 14:58:54,441 | INFO     | mean y: 3469164.4927884615
[2025-11-28 09:59:26] 2025-11-28 14:58:54,441 | INFO     | intersect: -46726377491.87576
[2025-11-28 09:59:26] 2025-11-28 14:58:54,441 | INFO     | chi2: 2.536295850726355
[2025-11-28 09:59:26] 2025-11-28 14:58:54,441 | INFO     | current chi2=2.536295850726355 (change=10.799816009147973 %)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,442 | INFO     | right removable region: 415
[2025-11-28 09:59:26] 2025-11-28 14:58:54,442 | INFO     | sum of square deviations: 23137809435.363373
[2025-11-28 09:59:26] 2025-11-28 14:58:54,446 | INFO     | sum of deviations: 246644567049.39932
[2025-11-28 09:59:26] 2025-11-28 14:58:54,446 | INFO     | mean x: 1764329082.2826602
[2025-11-28 09:59:26] 2025-11-28 14:58:54,446 | INFO     | mean y: 3458730.643705463
[2025-11-28 09:59:26] 2025-11-28 14:58:54,446 | INFO     | intersect: -18803947555.933167
[2025-11-28 09:59:26] 2025-11-28 14:58:54,447 | INFO     | chi2: 4.04619242766892
[2025-11-28 09:59:26] 2025-11-28 14:58:54,447 | INFO     | current chi2=4.04619242766892 (change=36.98572243720126 %)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,447 | INFO     | sum of square deviations: 22323134609.959152
[2025-11-28 09:59:26] 2025-11-28 14:58:54,451 | INFO     | sum of deviations: 213597782009.31726
[2025-11-28 09:59:26] 2025-11-28 14:58:54,451 | INFO     | mean x: 1764329234.7860577
[2025-11-28 09:59:26] 2025-11-28 14:58:54,451 | INFO     | mean y: 3464908.778846154
[2025-11-28 09:59:26] 2025-11-28 14:58:54,451 | INFO     | intersect: -16878429944.660263
[2025-11-28 09:59:26] 2025-11-28 14:58:54,452 | INFO     | chi2: 3.994226024928948
[2025-11-28 09:59:26] 2025-11-28 14:58:54,452 | INFO     | current chi2=3.994226024928948 (change=1.2843285055997926 %)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,452 | INFO     | left removable region: 20
[2025-11-28 09:59:26] 2025-11-28 14:58:54,453 | INFO     | sum of square deviations: 19110270034.24304
[2025-11-28 09:59:26] 2025-11-28 14:58:54,456 | INFO     | sum of deviations: 371535735086.2304
[2025-11-28 09:59:26] 2025-11-28 14:58:54,456 | INFO     | mean x: 1764329204.2835443
[2025-11-28 09:59:26] 2025-11-28 14:58:54,456 | INFO     | mean y: 3510986.435443038
[2025-11-28 09:59:26] 2025-11-28 14:58:54,456 | INFO     | intersect: -34298011005.30001
[2025-11-28 09:59:26] 2025-11-28 14:58:54,457 | INFO     | chi2: 0.041881519962256156
[2025-11-28 09:59:26] 2025-11-28 14:58:54,457 | INFO     | current memory leak: 19.44 B/s (using 395 data points, chi2=0.04)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | could have reported an average CPU frequency of 2408 MHz (18 samples)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | ..............................
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . Timing measurements:
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . get job = 0 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . initial setup = 1 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . payload setup = 7 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . stage-in = 0 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,458 | INFO     | . payload execution = 25956 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,459 | INFO     | . stage-out = 3 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,459 | INFO     | . log creation = 0 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,459 | INFO     | ..............................
[2025-11-28 09:59:26] 2025-11-28 14:58:54,541 | INFO     | 
[2025-11-28 09:59:26] 2025-11-28 14:58:54,541 | INFO     | job summary report
[2025-11-28 09:59:26] 2025-11-28 14:58:54,541 | INFO     | --------------------------------------------------
[2025-11-28 09:59:26] 2025-11-28 14:58:54,541 | INFO     | PanDA job id: 6898377009
[2025-11-28 09:59:26] 2025-11-28 14:58:54,541 | INFO     | task id: 47556173
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | errors: (none)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | pilot state: finished 
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | transexitcode: 0
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | exeerrorcode: 0
[2025-11-28 09:59:26] 2025-11-28 14:58:54,542 | INFO     | exeerrordiag: 
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | exitcode: 0
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | exitmsg: OK
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | cpuconsumptiontime: 298065 s
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | nevents: 1000
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | neventsw: 0
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | pid: 6256
[2025-11-28 09:59:26] 2025-11-28 14:58:54,543 | INFO     | pgrp: 6256
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | corecount: 12
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | event service: False
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 25967: 2321949, 25972: 2330943, 25975: 2330999, 25981: 2331373}
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | --------------------------------------------------
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | 
[2025-11-28 09:59:26] 2025-11-28 14:58:54,544 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 09:59:26] 2025-11-28 14:58:54,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 09:59:26] 2025-11-28 14:58:54,574 | INFO     | job 6898377009 has completed (purged errors)
[2025-11-28 09:59:26] 2025-11-28 14:58:54,575 | INFO     | overall cleanup function is called
[2025-11-28 09:59:26] 2025-11-28 14:58:55,591 | INFO     | --- collectZombieJob: --- 10, [6256]
[2025-11-28 09:59:26] 2025-11-28 14:58:55,591 | INFO     | zombie collector waiting for pid 6256
[2025-11-28 09:59:26] 2025-11-28 14:58:55,591 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 09:59:26] 2025-11-28 14:58:55,591 | INFO     | collected zombie processes
[2025-11-28 09:59:26] 2025-11-28 14:58:55,591 | INFO     | will attempt to kill all subprocesses of pid=6256
[2025-11-28 09:59:26] 2025-11-28 14:58:55,686 | INFO     | process IDs to be killed: [6256] (in reverse order)
[2025-11-28 09:59:26] 2025-11-28 14:58:55,739 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 09:59:26] 2025-11-28 14:58:55,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 09:59:26] 2025-11-28 14:58:55,743 | INFO     | did not find any defunct processes belonging to 6256
[2025-11-28 09:59:26] 2025-11-28 14:58:55,745 | INFO     | did not find any defunct processes belonging to 6256
[2025-11-28 09:59:26] 2025-11-28 14:58:55,748 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 09:59:26] 2025-11-28 14:58:55,748 | INFO     | ready for new job
[2025-11-28 09:59:26] 2025-11-28 14:58:55,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 09:59:26] 2025-11-28 14:58:55,750 | INFO     | ***************************************
[2025-11-28 09:59:26] 2025-11-28 14:58:55,750 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 09:59:26] 2025-11-28 14:58:55,750 | INFO     | ***************************************
[2025-11-28 09:59:26] 2025-11-28 14:58:55,751 | INFO     | 
[2025-11-28 09:59:26] 2025-11-28 14:58:55,751 | INFO     | architecture information:
[2025-11-28 09:59:26] 2025-11-28 14:58:55,752 | INFO     | executing command: cat /etc/os-release
[2025-11-28 09:59:26] 2025-11-28 14:58:55,767 | INFO     | cat /etc/os-release:
[2025-11-28 09:59:26] NAME="CentOS Linux"
[2025-11-28 09:59:26] VERSION="7 (Core)"
[2025-11-28 09:59:26] ID="centos"
[2025-11-28 09:59:26] ID_LIKE="rhel fedora"
[2025-11-28 09:59:26] VERSION_ID="7"
[2025-11-28 09:59:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 09:59:26] ANSI_COLOR="0;31"
[2025-11-28 09:59:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 09:59:26] HOME_URL="https://www.centos.org/"
[2025-11-28 09:59:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 09:59:26] 
[2025-11-28 09:59:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 09:59:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 09:59:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 09:59:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 09:59:26] 
[2025-11-28 09:59:26] 2025-11-28 14:58:55,768 | INFO     | ***************************************
[2025-11-28 09:59:26] 2025-11-28 14:58:56,270 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 09:59:26] 2025-11-28 14:58:56,288 | INFO     | sufficient remaining disk space (28386000896 B)
[2025-11-28 09:59:26] 2025-11-28 14:58:56,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 09:59:26] 2025-11-28 14:58:56,288 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 09:59:26] 2025-11-28 14:58:56,288 | INFO     | update_server=False
[2025-11-28 09:59:26] 2025-11-28 14:58:56,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 09:59:26] 2025-11-28 14:58:56,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:59:26] 2025-11-28 14:58:56,362 | INFO     | all job control threads have been joined
[2025-11-28 09:59:26] 2025-11-28 14:58:56,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 09:59:26] 2025-11-28 14:58:56,468 | INFO     | all data control threads have been joined
[2025-11-28 09:59:26] 2025-11-28 14:58:56,605 | INFO     | all payload control threads have been joined
[2025-11-28 09:59:26] 2025-11-28 14:58:57,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:59:26] 2025-11-28 14:58:57,262 | INFO     | aborting loop
[2025-11-28 09:59:26] 2025-11-28 14:58:57,294 | INFO     | [job] retrieve thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,294 | INFO     | [job] queue monitor thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,306 | INFO     | [payload] failed_post thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,368 | INFO     | [job] control thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,474 | INFO     | [data] control thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,611 | INFO     | [payload] control thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,870 | INFO     | [data] copytool_in thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:57,967 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,214 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,250 | INFO     | [payload] validate_post thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,268 | INFO     | [job] job monitor thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,320 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,389 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,428 | INFO     | [data] copytool_out thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:58,468 | INFO     | [job] validate thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:58:59,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 09:59:26] 2025-11-28 14:59:03,674 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 09:59:26] 2025-11-28 14:59:19,408 | INFO     | [monitor] cgroup control has ended
[2025-11-28 09:59:26] 2025-11-28 14:59:19,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040311117632)>', '<ExcThread(monitor, started 140039195444992)>']
[2025-11-28 09:59:26] 2025-11-28 14:59:24,711 | INFO     | all workflow threads have been joined
[2025-11-28 09:59:26] 2025-11-28 14:59:24,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 09:59:26] 2025-11-28 14:59:24,726 | INFO     | traces error code: 0
[2025-11-28 09:59:26] 2025-11-28 14:59:24,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | INFO     | PID=31151 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 09:59:26] 2025-11-28 14:59:26,199 | INFO     | [monitor] control thread has ended
[2025-11-28 09:59:26] 2025-11-28 14:59:26,285 [wrapper] ==== pilot stdout END ====
[2025-11-28 09:59:26] 2025-11-28 14:59:26,289 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 09:59:26] 2025-11-28 14:59:26,293 [wrapper] pilotpid: 31151
[2025-11-28 09:59:26] 2025-11-28 14:59:26,297 [wrapper] Pilot exit status: 0
[2025-11-28 09:59:26] 2025-11-28 14:59:26,311 [wrapper] pandaids: 6898377009 6898377009
[2025-11-28 09:59:26] 2025-11-28 14:59:26,351 [wrapper] cleanup supervisor_pilot  5405 31152
[2025-11-28 09:59:26] 2025-11-28 14:59:26,355 [wrapper] Test setup, not cleaning
[2025-11-28 09:59:26] 2025-11-28 14:59:26,359 [wrapper] apfmon messages muted
[2025-11-28 09:59:26] 2025-11-28 14:59:26,363 [wrapper] ==== wrapper stdout END ====
[2025-11-28 09:59:26] 2025-11-28 14:59:26,367 [wrapper] ==== wrapper stderr END ====
[2025-11-28 09:59:26]  *** Error codes and diagnostics ***
[2025-11-28 09:59:26]     "exeErrorCode": 0,
[2025-11-28 09:59:26]     "exeErrorDiag": "",
[2025-11-28 09:59:26]     "pilotErrorCode": 0,
[2025-11-28 09:59:26]     "pilotErrorDiag": "",
[2025-11-28 09:59:26]  *** Listing of results directory ***
[2025-11-28 09:59:26] total 1712524
[2025-11-28 09:59:26] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:04 pilot3.tar.gz
[2025-11-28 09:59:26] -rwx------ 1 boincer umatlas     36292 Nov 26 11:06 runpilot2-wrapper.sh
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:06 queuedata.json
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas       100 Nov 28 01:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 09:59:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 28 01:39 run_atlas
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas       105 Nov 28 01:39 job.xml
[2025-11-28 09:59:26] -rw-r--r-- 3 boincer umatlas 409913138 Nov 28 01:39 EVNT.47483658._003198.pool.root.1
[2025-11-28 09:59:26] -rw-r--r-- 3 boincer umatlas 409913138 Nov 28 01:39 ATLAS.root_0
[2025-11-28 09:59:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 01:39 start_atlas.sh
[2025-11-28 09:59:26] drwxrwx--x 2 boincer umatlas      4096 Nov 28 01:39 shared
[2025-11-28 09:59:26] -rw-r--r-- 2 boincer umatlas    590102 Nov 28 01:39 input.tar.gz
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas         0 Nov 28 01:39 boinc_lockfile
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas      2786 Nov 28 02:45 pandaJob.out
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas        57 Nov 28 02:45 setup.sh.local
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas    991842 Nov 28 02:45 agis_schedconf.cvmfs.json
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas       533 Nov 28 09:51 boinc_task_state.xml
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas      5956 Nov 28 09:57 init_data.xml
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas 918266170 Nov 28 09:58 HITS.47556173._001548.pool.root.1
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas      1061 Nov 28 09:58 memory_monitor_summary.json
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas   1516240 Nov 28 09:58 agis_ddmendpoints.agis.ALL.json
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas   2173968 Nov 28 09:58 log.47556173._001548.job.log.tgz.1
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas        96 Nov 28 09:58 pilot_heartbeat.json
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas      8668 Nov 28 09:58 heartbeat.json
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 09:59 boinc_mmap_file
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas        29 Nov 28 09:59 wrapper_checkpoint.txt
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas       745 Nov 28 09:59 pilotlog.txt
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas   3632775 Nov 28 09:59 log.47556173._001548.job.log.1
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas       353 Nov 28 09:59 output.list
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas       620 Nov 28 09:59 runtime_log
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas   5826560 Nov 28 09:59 result.tar.gz
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas      9430 Nov 28 09:59 runtime_log.err
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas       795 Nov 28 09:59 pG0NDm2CXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm40JKDmLazbjm.diag
[2025-11-28 09:59:26] -rw-r--r-- 1 boincer umatlas     23493 Nov 28 09:59 stderr.txt
[2025-11-28 09:59:26] HITS file was successfully produced:
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas 918266170 Nov 28 09:58 shared/HITS.pool.root.1
[2025-11-28 09:59:26]  *** Contents of shared directory: ***
[2025-11-28 09:59:26] total 1303348
[2025-11-28 09:59:26] -rw-r--r-- 3 boincer umatlas 409913138 Nov 28 01:39 ATLAS.root_0
[2025-11-28 09:59:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 28 01:39 start_atlas.sh
[2025-11-28 09:59:26] -rw-r--r-- 2 boincer umatlas    590102 Nov 28 01:39 input.tar.gz
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas 918266170 Nov 28 09:58 HITS.pool.root.1
[2025-11-28 09:59:26] -rw------- 1 boincer umatlas   5826560 Nov 28 09:59 result.tar.gz
09:59:28 (27404): run_atlas exited; CPU time 291130.779756
09:59:28 (27404): called boinc_finish(0)

</stderr_txt>
]]>

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