Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:30:05 (1539686): wrapper (7.7.26015): starting
07:30:05 (1539686): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 07:30:05] Arguments: --nthreads 3
[2025-11-28 07:30:05] Threads: 3
[2025-11-28 07:30:05] Checking for CVMFS
[2025-11-28 07:30:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 07:30:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 07:30:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 07:30:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 07:30:05] 2.9.2.0 1330245 54 59564 153400 2 88 36274450 36864000 0 130560 0 626049 100.000 1300 17333 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 07:30:05] CVMFS is ok
[2025-11-28 07:30:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 07:30:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 07:30:05] Further information can be found at the LHC@home message board.
[2025-11-28 07:30:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 07:30:05] Checking for apptainer binary...
[2025-11-28 07:30:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 07:30:05] Running /usr/bin/apptainer --version
[2025-11-28 07:30:05] apptainer version 1.4.1-1.1
[2025-11-28 07:30:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 07:30:05] thA335
[2025-11-28 07:30:05] apptainer works
[2025-11-28 07:30:05] Set ATHENA_PROC_NUMBER=3
[2025-11-28 07:30:05] Set ATHENA_CORE_NUMBER=3
[2025-11-28 07:30:05] Starting ATLAS job with PandaID=6898413629
[2025-11-28 07:30:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:34:19]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | INFO     | sufficient remaining disk space (826139475968 B)
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | INFO     | update_server=False
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:34:19] 2025-11-28 06:33:26,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:34:19] 2025-11-28 06:33:26,340 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:34:19] 2025-11-28 06:33:26,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:34:19] 2025-11-28 06:33:26,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:34:19] 2025-11-28 06:33:26,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:34:19] 2025-11-28 06:33:26,608 | INFO     | aborting loop
[2025-11-28 07:34:19] 2025-11-28 06:33:27,136 | INFO     | all payload control threads have been joined
[2025-11-28 07:34:19] 2025-11-28 06:33:27,206 | INFO     | all data control threads have been joined
[2025-11-28 07:34:19] 2025-11-28 06:33:27,345 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:27,346 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:27,499 | INFO     | all job control threads have been joined
[2025-11-28 07:34:19] 2025-11-28 06:33:27,609 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:27,614 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:27,636 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:27,968 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,107 | INFO     | [job] validate thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,142 | INFO     | [payload] control thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,158 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,185 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,212 | INFO     | [data] control thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,243 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,345 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,506 | INFO     | [job] control thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:28,524 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:33:30,346 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:34:19] 2025-11-28 06:34:12,907 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:34:19] 2025-11-28 06:34:13,913 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140489542178624)>', '<ExcThread(monitor, started 140488883549952)>']
[2025-11-28 07:34:19] 2025-11-28 06:34:14,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:34:19] 2025-11-28 06:34:14,593 | INFO     | [monitor] control thread has ended
[2025-11-28 07:34:19] 2025-11-28 06:34:18,939 | INFO     | all workflow threads have been joined
[2025-11-28 07:34:19] 2025-11-28 06:34:18,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:34:19] 2025-11-28 06:34:18,940 | INFO     | traces error code: 0
[2025-11-28 07:34:19] 2025-11-28 06:34:18,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:34:19] 2025-11-28 06:34:18,984 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:34:19] 2025-11-28 06:34:18,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:34:19] 2025-11-28 06:34:18,991 [wrapper] pilotpid: 1543410
[2025-11-28 07:34:19] 2025-11-28 06:34:18,994 [wrapper] Pilot exit status: 0
[2025-11-28 07:34:19] 2025-11-28 06:34:19,001 [wrapper] pandaids: 6898413629
[2025-11-28 07:34:19] 2025-11-28 06:34:19,018 [wrapper] cleanup supervisor_pilot 1543416 1543411
[2025-11-28 07:34:19] 2025-11-28 06:34:19,021 [wrapper] Test setup, not cleaning
[2025-11-28 07:34:19] 2025-11-28 06:34:19,023 [wrapper] apfmon messages muted
[2025-11-28 07:34:19] 2025-11-28 06:34:19,026 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:34:19] 2025-11-28 06:34:19,028 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:34:19]  *** Error codes and diagnostics ***
[2025-11-28 07:34:19]     "exeErrorCode": 65,
[2025-11-28 07:34:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 07:34:19]     "pilotErrorCode": 1305,
[2025-11-28 07:34:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 07:34:19]  *** Listing of results directory ***
[2025-11-28 07:34:19] total 402728
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:35 queuedata.json
[2025-11-28 07:34:19] -rwx------ 1 boinc boinc     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc       100 Nov 28 07:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:34:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 07:30 run_atlas
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc       105 Nov 28 07:30 job.xml
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc 408203546 Nov 28 07:30 EVNT.47483658._002629.pool.root.1
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc    590106 Nov 28 07:30 input.tar.gz
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc     15847 Nov 28 07:30 start_atlas.sh
[2025-11-28 07:34:19] drwxrwx--x 2 boinc boinc      4096 Nov 28 07:30 shared
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc         0 Nov 28 07:30 boinc_setup_complete
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      6196 Nov 28 07:30 init_data.xml
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc         0 Nov 28 07:30 boinc_lockfile
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      2787 Nov 28 07:30 pandaJob.out
[2025-11-28 07:34:19] -rw------- 1 boinc boinc    991866 Nov 28 07:30 agis_schedconf.cvmfs.json
[2025-11-28 07:34:19] -rw------- 1 boinc boinc   1516240 Nov 28 07:30 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:34:19] drwx------ 5 boinc boinc      4096 Nov 28 07:30 pilot3
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc       522 Nov 28 07:31 boinc_task_state.xml
[2025-11-28 07:34:19] -rw------- 1 boinc boinc       960 Nov 28 07:31 memory_monitor_summary.json
[2025-11-28 07:34:19] -rw------- 1 boinc boinc     56012 Nov 28 07:31 log.47556161._006119.job.log.tgz.1
[2025-11-28 07:34:19] -rw------- 1 boinc boinc        95 Nov 28 07:33 pilot_heartbeat.json
[2025-11-28 07:34:19] -rw------- 1 boinc boinc      8413 Nov 28 07:33 heartbeat.json
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      8192 Nov 28 07:34 boinc_mmap_file
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc        22 Nov 28 07:34 wrapper_checkpoint.txt
[2025-11-28 07:34:19] -rw------- 1 boinc boinc      4556 Nov 28 07:34 pilotlog.txt
[2025-11-28 07:34:19] -rw------- 1 boinc boinc     93071 Nov 28 07:34 log.47556161._006119.job.log.1
[2025-11-28 07:34:19] -rw------- 1 boinc boinc       186 Nov 28 07:34 output.list
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc       620 Nov 28 07:34 runtime_log
[2025-11-28 07:34:19] -rw------- 1 boinc boinc    163840 Nov 28 07:34 result.tar.gz
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      8744 Nov 28 07:34 runtime_log.err
[2025-11-28 07:34:19] -rw------- 1 boinc boinc       649 Nov 28 07:34 bs5KDmzfXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmV4JKDmUwHTBn.diag
[2025-11-28 07:34:19] -rw-r--r-- 1 boinc boinc      8047 Nov 28 07:34 stderr.txt
[2025-11-28 07:34:19] No HITS result produced
[2025-11-28 07:34:19]  *** Contents of shared directory: ***
[2025-11-28 07:34:19] total 399400
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc 408203546 Nov 28 07:30 ATLAS.root_0
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc    590106 Nov 28 07:30 input.tar.gz
[2025-11-28 07:34:19] -rw-r--r-- 2 boinc boinc     15847 Nov 28 07:30 start_atlas.sh
[2025-11-28 07:34:19] -rw------- 1 boinc boinc    163840 Nov 28 07:34 result.tar.gz
07:34:20 (1539686): run_atlas exited; CPU time 30.929305
07:34:20 (1539686): called boinc_finish(0)

</stderr_txt>
]]>

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