Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:35:51 (1330120): wrapper (7.7.26015): starting
06:35:51 (1330120): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 06:35:51] Arguments: --nthreads 3
[2025-11-28 06:35:51] Threads: 3
[2025-11-28 06:35:51] Checking for CVMFS
[2025-11-28 06:35:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 06:35:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 06:35:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 06:35:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 06:35:53] 2.9.2.0 1330245 0 29988 153399 3 1 36251553 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 06:35:53] CVMFS is ok
[2025-11-28 06:35:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 06:35:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 06:35:53] Further information can be found at the LHC@home message board.
[2025-11-28 06:35:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 06:35:53] Checking for apptainer binary...
[2025-11-28 06:35:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 06:35:53] Running /usr/bin/apptainer --version
[2025-11-28 06:35:53] apptainer version 1.4.1-1.1
[2025-11-28 06:35:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 06:35:53] thA335
[2025-11-28 06:35:53] apptainer works
[2025-11-28 06:35:53] Set ATHENA_PROC_NUMBER=3
[2025-11-28 06:35:53] Set ATHENA_CORE_NUMBER=3
[2025-11-28 06:35:53] Starting ATLAS job with PandaID=6898376953
[2025-11-28 06:35:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:40:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | INFO     | sufficient remaining disk space (826160447488 B)
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | INFO     | update_server=False
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:40:12] 2025-11-28 05:39:24,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:40:12] 2025-11-28 05:39:24,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:40:12] 2025-11-28 05:39:24,356 | INFO     | aborting loop
[2025-11-28 06:40:12] 2025-11-28 05:39:24,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:40:12] 2025-11-28 05:39:25,089 | INFO     | all job control threads have been joined
[2025-11-28 06:40:12] 2025-11-28 05:39:25,172 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,173 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,214 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,215 | INFO     | all data control threads have been joined
[2025-11-28 06:40:12] 2025-11-28 05:39:25,362 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,477 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,585 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:25,641 | INFO     | all payload control threads have been joined
[2025-11-28 06:40:12] 2025-11-28 05:39:26,095 | INFO     | [job] control thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,221 | INFO     | [data] control thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,414 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,510 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,586 | INFO     | [job] validate thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,647 | INFO     | [payload] control thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,659 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:26,965 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:27,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:40:12] 2025-11-28 05:39:31,277 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:40:12] 2025-11-28 05:39:54,256 | INFO     | PID=1334324 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 06:40:12] 2025-11-28 05:39:54,256 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:40:12] 2025-11-28 05:39:54,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:40:12] 2025-11-28 05:39:54,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:40:12] 2025-11-28 05:40:05,326 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:40:12] 2025-11-28 05:40:07,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369513666368)>', '<ExcThread(monitor, started 140369161336576)>']
[2025-11-28 06:40:12] 2025-11-28 05:40:07,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:40:12] 2025-11-28 05:40:07,326 | INFO     | [monitor] control thread has ended
[2025-11-28 06:40:12] 2025-11-28 05:40:12,150 | INFO     | all workflow threads have been joined
[2025-11-28 06:40:12] 2025-11-28 05:40:12,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:40:12] 2025-11-28 05:40:12,151 | INFO     | traces error code: 0
[2025-11-28 06:40:12] 2025-11-28 05:40:12,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:40:12] 2025-11-28 05:40:12,197 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:40:12] 2025-11-28 05:40:12,200 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:40:12] 2025-11-28 05:40:12,203 [wrapper] pilotpid: 1334324
[2025-11-28 06:40:12] 2025-11-28 05:40:12,206 [wrapper] Pilot exit status: 0
[2025-11-28 06:40:12] 2025-11-28 05:40:12,213 [wrapper] pandaids: 6898376953
[2025-11-28 06:40:12] 2025-11-28 05:40:12,229 [wrapper] cleanup supervisor_pilot 1334330 1334325
[2025-11-28 06:40:12] 2025-11-28 05:40:12,231 [wrapper] Test setup, not cleaning
[2025-11-28 06:40:12] 2025-11-28 05:40:12,234 [wrapper] apfmon messages muted
[2025-11-28 06:40:12] 2025-11-28 05:40:12,236 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:40:12] 2025-11-28 05:40:12,239 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:40:12]  *** Error codes and diagnostics ***
[2025-11-28 06:40:12]     "exeErrorCode": 65,
[2025-11-28 06:40:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 06:40:12]     "pilotErrorCode": 1305,
[2025-11-28 06:40:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 06:40:12]  *** Listing of results directory ***
[2025-11-28 06:40:12] total 402636
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc    576529 Nov 26 16:45 pilot3.tar.gz
[2025-11-28 06:40:12] -rwx------ 1 boinc boinc     36292 Nov 26 16:54 runpilot2-wrapper.sh
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      5112 Nov 26 16:54 queuedata.json
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc       100 Nov 28 06:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:40:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 06:35 run_atlas
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc       105 Nov 28 06:35 job.xml
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc 408099067 Nov 28 06:35 EVNT.47483658._002561.pool.root.1
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc    590105 Nov 28 06:35 input.tar.gz
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc     15847 Nov 28 06:35 start_atlas.sh
[2025-11-28 06:40:12] drwxrwx--x 2 boinc boinc      4096 Nov 28 06:35 shared
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 06:35 boinc_setup_complete
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      6196 Nov 28 06:35 init_data.xml
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 06:35 boinc_lockfile
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      2783 Nov 28 06:35 pandaJob.out
[2025-11-28 06:40:12] -rw------- 1 boinc boinc    991858 Nov 28 06:36 agis_schedconf.cvmfs.json
[2025-11-28 06:40:12] -rw------- 1 boinc boinc   1516240 Nov 28 06:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:40:12] drwx------ 5 boinc boinc      4096 Nov 28 06:36 pilot3
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc       522 Nov 28 06:37 boinc_task_state.xml
[2025-11-28 06:40:12] -rw------- 1 boinc boinc       961 Nov 28 06:37 memory_monitor_summary.json
[2025-11-28 06:40:12] -rw------- 1 boinc boinc     56056 Nov 28 06:37 log.47556161._005431.job.log.tgz.1
[2025-11-28 06:40:12] -rw------- 1 boinc boinc        95 Nov 28 06:39 pilot_heartbeat.json
[2025-11-28 06:40:12] -rw------- 1 boinc boinc      8410 Nov 28 06:39 heartbeat.json
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      8192 Nov 28 06:39 boinc_mmap_file
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc        22 Nov 28 06:39 wrapper_checkpoint.txt
[2025-11-28 06:40:12] -rw------- 1 boinc boinc      4752 Nov 28 06:40 pilotlog.txt
[2025-11-28 06:40:12] -rw------- 1 boinc boinc     93594 Nov 28 06:40 log.47556161._005431.job.log.1
[2025-11-28 06:40:12] -rw------- 1 boinc boinc       186 Nov 28 06:40 output.list
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc       620 Nov 28 06:40 runtime_log
[2025-11-28 06:40:12] -rw------- 1 boinc boinc    174080 Nov 28 06:40 result.tar.gz
[2025-11-28 06:40:12] -rw------- 1 boinc boinc       648 Nov 28 06:40 yoVKDm11Wi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmy0JKDm3Ntonm.diag
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      8744 Nov 28 06:40 runtime_log.err
[2025-11-28 06:40:12] -rw-r--r-- 1 boinc boinc      8111 Nov 28 06:40 stderr.txt
[2025-11-28 06:40:12] No HITS result produced
[2025-11-28 06:40:12]  *** Contents of shared directory: ***
[2025-11-28 06:40:12] total 399308
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc 408099067 Nov 28 06:35 ATLAS.root_0
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc    590105 Nov 28 06:35 input.tar.gz
[2025-11-28 06:40:12] -rw-r--r-- 2 boinc boinc     15847 Nov 28 06:35 start_atlas.sh
[2025-11-28 06:40:12] -rw------- 1 boinc boinc    174080 Nov 28 06:40 result.tar.gz
06:40:13 (1330120): run_atlas exited; CPU time 31.180431
06:40:13 (1330120): called boinc_finish(0)

</stderr_txt>
]]>

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