Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:49 (1630502): wrapper (7.7.26015): starting
00:09:49 (1630502): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 00:09:49] Arguments: --nthreads 12
[2025-11-28 00:09:49] Threads: 12
[2025-11-28 00:09:49] Checking for CVMFS
[2025-11-28 00:09:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:09:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:09:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:09:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:09:50] 2.13.2.0 6869 39068 162640 153398 3 135 34308790 40960000 18490 16776704 0 79208495 99.779 44126535 42374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:09:50] CVMFS is ok
[2025-11-28 00:09:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:09:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:09:50] Further information can be found at the LHC@home message board.
[2025-11-28 00:09:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:09:50] Checking for apptainer binary...
[2025-11-28 00:09:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:09:50] Running /usr/bin/apptainer --version
[2025-11-28 00:09:51] apptainer version 1.4.4-1.el9
[2025-11-28 00:09:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:09:51] c-212-13.aglt2.org
[2025-11-28 00:09:51] apptainer works
[2025-11-28 00:09:51] Set ATHENA_PROC_NUMBER=12
[2025-11-28 00:09:51] Set ATHENA_CORE_NUMBER=12
[2025-11-28 00:09:51] Starting ATLAS job with PandaID=6898762764
[2025-11-28 00:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:41:02]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:41:02] 2025-11-28 17:40:27,255 | INFO     | monitor loop #2715: job 0:6898762764 is in state 'finished'
[2025-11-28 12:41:02] 2025-11-28 17:40:27,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,517 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:41:02] 2025-11-28 17:40:28,522 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2976.3722187499993
[2025-11-28 12:41:02] 2025-11-28 17:40:28,523 | INFO     | time since job start (45005s) is within the limit (172800.0s)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,538 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898762764/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,539 | INFO     | extracted standard info from prmon json
[2025-11-28 12:41:02] 2025-11-28 17:40:28,539 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:41:02] 2025-11-28 17:40:28,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:41:02] 2025-11-28 17:40:28,546 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:41:02] 2025-11-28 17:40:28,547 | INFO     | sum of square deviations: 124125489126.6052
[2025-11-28 12:41:02] 2025-11-28 17:40:28,558 | INFO     | sum of deviations: 2549452965435.7437
[2025-11-28 12:41:02] 2025-11-28 17:40:28,558 | INFO     | mean x: 1764329135.1397557
[2025-11-28 12:41:02] 2025-11-28 17:40:28,559 | INFO     | mean y: 3351687.1383989146
[2025-11-28 12:41:02] 2025-11-28 17:40:28,559 | INFO     | intersect: -36234766504.676315
[2025-11-28 12:41:02] 2025-11-28 17:40:28,559 | INFO     | chi2: 8.231933143212322
[2025-11-28 12:41:02] 2025-11-28 17:40:28,560 | INFO     | sum of square deviations: 121616657923.55591
[2025-11-28 12:41:02] 2025-11-28 17:40:28,571 | INFO     | sum of deviations: 2831122596015.7534
[2025-11-28 12:41:02] 2025-11-28 17:40:28,572 | INFO     | mean x: 1764328982.6543715
[2025-11-28 12:41:02] 2025-11-28 17:40:28,572 | INFO     | mean y: 3368802.0464480873
[2025-11-28 12:41:02] 2025-11-28 17:40:28,572 | INFO     | intersect: -41068567681.670975
[2025-11-28 12:41:02] 2025-11-28 17:40:28,572 | INFO     | chi2: 5.0027485419892095
[2025-11-28 12:41:02] 2025-11-28 17:40:28,573 | INFO     | current chi2=5.0027485419892095 (change=39.22753677713905 %)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,573 | INFO     | sum of square deviations: 119141428221.43634
[2025-11-28 12:41:02] 2025-11-28 17:40:28,585 | INFO     | sum of deviations: 2845871667603.5884
[2025-11-28 12:41:02] 2025-11-28 17:40:28,585 | INFO     | mean x: 1764328830.1554332
[2025-11-28 12:41:02] 2025-11-28 17:40:28,586 | INFO     | mean y: 3369694.623108666
[2025-11-28 12:41:02] 2025-11-28 17:40:28,586 | INFO     | intersect: -42140270053.789154
[2025-11-28 12:41:02] 2025-11-28 17:40:28,586 | INFO     | chi2: 4.7285705817945285
[2025-11-28 12:41:02] 2025-11-28 17:40:28,586 | INFO     | current chi2=4.7285705817945285 (change=5.480546501457006 %)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,587 | INFO     | right removable region: 726
[2025-11-28 12:41:02] 2025-11-28 17:40:28,587 | INFO     | sum of square deviations: 121615695953.55591
[2025-11-28 12:41:02] 2025-11-28 17:40:28,593 | INFO     | sum of deviations: 2237215795196.585
[2025-11-28 12:41:02] 2025-11-28 17:40:28,593 | INFO     | mean x: 1764329287.6543715
[2025-11-28 12:41:02] 2025-11-28 17:40:28,593 | INFO     | mean y: 3370654.176229508
[2025-11-28 12:41:02] 2025-11-28 17:40:28,593 | INFO     | intersect: -32452845784.988815
[2025-11-28 12:41:02] 2025-11-28 17:40:28,594 | INFO     | chi2: 4.94822090239207
[2025-11-28 12:41:02] 2025-11-28 17:40:28,594 | INFO     | current chi2=4.94822090239207 (change=39.88992844928354 %)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,595 | INFO     | sum of square deviations: 119140127815.52122
[2025-11-28 12:41:02] 2025-11-28 17:40:28,605 | INFO     | sum of deviations: 2066686180996.3096
[2025-11-28 12:41:02] 2025-11-28 17:40:28,605 | INFO     | mean x: 1764329440.1636863
[2025-11-28 12:41:02] 2025-11-28 17:40:28,605 | INFO     | mean y: 3381144.3755158186
[2025-11-28 12:41:02] 2025-11-28 17:40:28,606 | INFO     | intersect: -30601884600.825527
[2025-11-28 12:41:02] 2025-11-28 17:40:28,606 | INFO     | chi2: 4.03385633965246
[2025-11-28 12:41:02] 2025-11-28 17:40:28,606 | INFO     | current chi2=4.03385633965246 (change=18.478652848695322 %)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,606 | INFO     | left removable region: 20
[2025-11-28 12:41:02] 2025-11-28 17:40:28,607 | INFO     | sum of square deviations: 109110662683.44478
[2025-11-28 12:41:02] 2025-11-28 17:40:28,617 | INFO     | sum of deviations: 2187027832944.0745
[2025-11-28 12:41:02] 2025-11-28 17:40:28,617 | INFO     | mean x: 1764329409.6883852
[2025-11-28 12:41:02] 2025-11-28 17:40:28,617 | INFO     | mean y: 3410178.0821529743
[2025-11-28 12:41:02] 2025-11-28 17:40:28,617 | INFO     | intersect: -35361030203.56126
[2025-11-28 12:41:02] 2025-11-28 17:40:28,618 | INFO     | chi2: 0.35765566199862764
[2025-11-28 12:41:02] 2025-11-28 17:40:28,618 | INFO     | current memory leak: 20.04 B/s (using 706 data points, chi2=0.36)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,618 | INFO     | could have reported an average CPU frequency of 2965 MHz (28 samples)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | ..............................
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . Timing measurements:
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . get job = 0 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . initial setup = 3 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . payload setup = 16 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . stage-in = 0 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . payload execution = 44935 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . stage-out = 3 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | . log creation = 0 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,619 | INFO     | ..............................
[2025-11-28 12:41:02] 2025-11-28 17:40:28,696 | INFO     | 
[2025-11-28 12:41:02] 2025-11-28 17:40:28,696 | INFO     | job summary report
[2025-11-28 12:41:02] 2025-11-28 17:40:28,696 | INFO     | --------------------------------------------------
[2025-11-28 12:41:02] 2025-11-28 17:40:28,696 | INFO     | PanDA job id: 6898762764
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | task id: 47556161
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | errors: (none)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | pilot state: finished 
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | transexitcode: 0
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | exeerrorcode: 0
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | exeerrordiag: 
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | exitcode: 0
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | exitmsg: OK
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | cpuconsumptiontime: 205849 s
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | nevents: 1000
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | neventsw: 0
[2025-11-28 12:41:02] 2025-11-28 17:40:28,697 | INFO     | pid: 1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | pgrp: 1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | corecount: 12
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | event service: False
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 13: 2284633, 23: 2284689, 44955: 2330643, 44960: 2339637, 44961: 2339693, 44971: 2339939}
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | --------------------------------------------------
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | 
[2025-11-28 12:41:02] 2025-11-28 17:40:28,698 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,719 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:41:02] 2025-11-28 17:40:28,719 | INFO     | job 6898762764 has completed (purged errors)
[2025-11-28 12:41:02] 2025-11-28 17:40:28,719 | INFO     | overall cleanup function is called
[2025-11-28 12:41:02] 2025-11-28 17:40:29,740 | INFO     | --- collectZombieJob: --- 10, [1667004]
[2025-11-28 12:41:02] 2025-11-28 17:40:29,740 | INFO     | zombie collector waiting for pid 1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:29,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:41:02] 2025-11-28 17:40:29,741 | INFO     | collected zombie processes
[2025-11-28 12:41:02] 2025-11-28 17:40:29,741 | INFO     | will attempt to kill all subprocesses of pid=1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:30,142 | INFO     | process IDs to be killed: [1667004] (in reverse order)
[2025-11-28 12:41:02] 2025-11-28 17:40:30,403 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:41:02] 2025-11-28 17:40:30,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:41:02] 2025-11-28 17:40:30,421 | INFO     | did not find any defunct processes belonging to 1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:30,437 | INFO     | did not find any defunct processes belonging to 1667004
[2025-11-28 12:41:02] 2025-11-28 17:40:30,439 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:41:02] 2025-11-28 17:40:30,439 | INFO     | ready for new job
[2025-11-28 12:41:02] 2025-11-28 17:40:30,439 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:41:02] 2025-11-28 17:40:30,443 | INFO     | ***************************************
[2025-11-28 12:41:02] 2025-11-28 17:40:30,443 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:41:02] 2025-11-28 17:40:30,443 | INFO     | ***************************************
[2025-11-28 12:41:02] 2025-11-28 17:40:30,443 | INFO     | 
[2025-11-28 12:41:02] 2025-11-28 17:40:30,448 | INFO     | architecture information:
[2025-11-28 12:41:02] 2025-11-28 17:40:30,449 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:41:02] 2025-11-28 17:40:30,488 | INFO     | cat /etc/os-release:
[2025-11-28 12:41:02] NAME="CentOS Linux"
[2025-11-28 12:41:02] VERSION="7 (Core)"
[2025-11-28 12:41:02] ID="centos"
[2025-11-28 12:41:02] ID_LIKE="rhel fedora"
[2025-11-28 12:41:02] VERSION_ID="7"
[2025-11-28 12:41:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:41:02] ANSI_COLOR="0;31"
[2025-11-28 12:41:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:41:02] HOME_URL="https://www.centos.org/"
[2025-11-28 12:41:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:41:02] 
[2025-11-28 12:41:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:41:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:41:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:41:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:41:02] 
[2025-11-28 12:41:02] 2025-11-28 17:40:30,489 | INFO     | ***************************************
[2025-11-28 12:41:02] 2025-11-28 17:40:30,992 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-28 12:41:02] 2025-11-28 17:40:31,016 | INFO     | sufficient remaining disk space (120994136064 B)
[2025-11-28 12:41:02] 2025-11-28 17:40:31,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:41:02] 2025-11-28 17:40:31,016 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:41:02] 2025-11-28 17:40:31,016 | INFO     | update_server=False
[2025-11-28 12:41:02] 2025-11-28 17:40:31,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:41:02] 2025-11-28 17:40:31,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:41:02] 2025-11-28 17:40:31,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:41:02] 2025-11-28 17:40:31,017 | INFO     | aborting loop
[2025-11-28 12:41:02] 2025-11-28 17:40:31,413 | INFO     | all data control threads have been joined
[2025-11-28 12:41:02] 2025-11-28 17:40:31,885 | INFO     | all payload control threads have been joined
[2025-11-28 12:41:02] 2025-11-28 17:40:32,021 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,022 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,080 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,128 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,135 | INFO     | [job] validate thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,171 | INFO     | all job control threads have been joined
[2025-11-28 12:41:02] 2025-11-28 17:40:32,304 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,333 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,418 | INFO     | [data] control thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,428 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:32,892 | INFO     | [payload] control thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:33,022 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:33,177 | INFO     | [job] control thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:33,269 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:33,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:41:02] 2025-11-28 17:40:34,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:41:02] 2025-11-28 17:40:34,717 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:38,092 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:41:02] 2025-11-28 17:40:43,804 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:41:02] 2025-11-28 17:40:44,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064882153280)>', '<ExcThread(monitor, started 140064235443968)>']
[2025-11-28 12:41:02] 2025-11-28 17:40:49,794 | INFO     | all workflow threads have been joined
[2025-11-28 12:41:02] 2025-11-28 17:40:49,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:41:02] 2025-11-28 17:40:49,796 | INFO     | traces error code: 0
[2025-11-28 12:41:02] 2025-11-28 17:40:49,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:41:02] 2025-11-28 17:41:02,120 | INFO     | PID=1640242 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 12:41:02] 2025-11-28 17:41:02,120 | INFO     | .. there are 19 such processes running
[2025-11-28 12:41:02] 2025-11-28 17:41:02,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:41:02] 2025-11-28 17:41:02,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:41:02] 2025-11-28 17:41:02,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:41:02] 2025-11-28 17:41:02,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:41:02] 2025-11-28 17:41:02,122 | INFO     | [monitor] control thread has ended
[2025-11-28 12:41:02] 2025-11-28 17:41:02,277 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:41:02] 2025-11-28 17:41:02,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:41:02] 2025-11-28 17:41:02,283 [wrapper] pilotpid: 1640242
[2025-11-28 12:41:02] 2025-11-28 17:41:02,294 [wrapper] Pilot exit status: 0
[2025-11-28 12:41:02] 2025-11-28 17:41:02,320 [wrapper] pandaids: 6898762764
[2025-11-28 12:41:02] 2025-11-28 17:41:02,453 [wrapper] cleanup supervisor_pilot 3455476 1640243
[2025-11-28 12:41:02] 2025-11-28 17:41:02,455 [wrapper] Test setup, not cleaning
[2025-11-28 12:41:02] 2025-11-28 17:41:02,459 [wrapper] apfmon messages muted
[2025-11-28 12:41:02] 2025-11-28 17:41:02,462 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:41:02] 2025-11-28 17:41:02,464 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:41:02]  *** Error codes and diagnostics ***
[2025-11-28 12:41:02]     "exeErrorCode": 0,
[2025-11-28 12:41:02]     "exeErrorDiag": "",
[2025-11-28 12:41:02]     "pilotErrorCode": 0,
[2025-11-28 12:41:02]     "pilotErrorDiag": "",
[2025-11-28 12:41:02]  *** Listing of results directory ***
[2025-11-28 12:41:02] total 1301720
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 19:01 pilot3.tar.gz
[2025-11-28 12:41:02] -rwx------. 1 boincer umatlas     36292 Nov 26 19:12 runpilot2-wrapper.sh
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 19:12 queuedata.json
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:41:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:09 run_atlas
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:09 job.xml
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas 410924967 Nov 28 00:09 EVNT.47483658._002752.pool.root.1
[2025-11-28 12:41:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:09 shared
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:09 input.tar.gz
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:09 start_atlas.sh
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:09 boinc_lockfile
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas      2786 Nov 28 00:09 pandaJob.out
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas        57 Nov 28 00:09 setup.sh.local
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas    991858 Nov 28 00:10 agis_schedconf.cvmfs.json
[2025-11-28 12:41:02] drwx------. 5 boincer umatlas      4096 Nov 28 00:10 pilot3
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas       533 Nov 28 12:32 boinc_task_state.xml
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas      6948 Nov 28 12:37 init_data.xml
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas 901932765 Nov 28 12:39 HITS.47556161._007344.pool.root.1
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas      1051 Nov 28 12:40 memory_monitor_summary.json
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas   1516240 Nov 28 12:40 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas   2388510 Nov 28 12:40 log.47556161._007344.job.log.tgz.1
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas      8585 Nov 28 12:40 heartbeat.json
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas        95 Nov 28 12:41 pilot_heartbeat.json
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas       823 Nov 28 12:41 pilotlog.txt
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas        29 Nov 28 12:41 wrapper_checkpoint.txt
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 12:41 boinc_mmap_file
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas   5703995 Nov 28 12:41 log.47556161._007344.job.log.1
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas       353 Nov 28 12:41 output.list
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas       620 Nov 28 12:41 runtime_log
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas   8110080 Nov 28 12:41 result.tar.gz
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas      9345 Nov 28 12:41 runtime_log.err
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas       660 Nov 28 12:41 BsJKDmNnei8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYJKKDmLlp3cn.diag
[2025-11-28 12:41:02] -rw-r--r--. 1 boincer umatlas     21369 Nov 28 12:41 stderr.txt
[2025-11-28 12:41:02] HITS file was successfully produced:
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas 901932765 Nov 28 12:39 shared/HITS.pool.root.1
[2025-11-28 12:41:02]  *** Contents of shared directory: ***
[2025-11-28 12:41:02] total 1290616
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas 410924967 Nov 28 00:09 ATLAS.root_0
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:09 input.tar.gz
[2025-11-28 12:41:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:09 start_atlas.sh
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas 901932765 Nov 28 12:39 HITS.pool.root.1
[2025-11-28 12:41:02] -rw-------. 1 boincer umatlas   8110080 Nov 28 12:41 result.tar.gz
12:41:04 (1630502): run_atlas exited; CPU time 206170.600589
12:41:04 (1630502): called boinc_finish(0)

</stderr_txt>
]]>

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