Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:34 (1625036): wrapper (7.7.26015): starting
00:09:34 (1625036): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 00:09:34] Arguments: --nthreads 12
[2025-11-28 00:09:34] Threads: 12
[2025-11-28 00:09:34] Checking for CVMFS
[2025-11-28 00:09:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:09:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:09:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:09:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:09:36] 2.13.2.0 6869 39067 162640 153398 3 128 34308790 40960000 18408 16776704 0 79201779 99.779 44126535 42374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:09:36] CVMFS is ok
[2025-11-28 00:09:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:09:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:09:36] Further information can be found at the LHC@home message board.
[2025-11-28 00:09:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:09:36] Checking for apptainer binary...
[2025-11-28 00:09:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:09:36] Running /usr/bin/apptainer --version
[2025-11-28 00:09:36] apptainer version 1.4.4-1.el9
[2025-11-28 00:09:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:09:36] c-212-13.aglt2.org
[2025-11-28 00:09:36] apptainer works
[2025-11-28 00:09:36] Set ATHENA_PROC_NUMBER=12
[2025-11-28 00:09:36] Set ATHENA_CORE_NUMBER=12
[2025-11-28 00:09:36] Starting ATLAS job with PandaID=6898377049
[2025-11-28 00:09:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 17:14:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 17:14:04] 2025-11-28 22:12:43,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 17:14:04] 2025-11-28 22:12:44,237 | INFO     | time since job start (61355s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:45,712 | INFO     | monitor loop #3660: job 0:6898377049 is in state 'finished'
[2025-11-28 17:14:04] 2025-11-28 22:12:45,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 17:14:04] 2025-11-28 22:12:46,247 | INFO     | time since job start (61357s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:48,224 | INFO     | monitor loop #3661: job 0:6898377049 is in state 'finished'
[2025-11-28 17:14:04] 2025-11-28 22:12:48,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 17:14:04] 2025-11-28 22:12:48,254 | INFO     | time since job start (61359s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:50,261 | INFO     | time since job start (61361s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:50,731 | INFO     | monitor loop #3662: job 0:6898377049 is in state 'finished'
[2025-11-28 17:14:04] 2025-11-28 22:12:50,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 17:14:04] 2025-11-28 22:12:52,268 | INFO     | time since job start (61363s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:53,235 | INFO     | monitor loop #3663: job 0:6898377049 is in state 'finished'
[2025-11-28 17:14:04] 2025-11-28 22:12:53,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,158 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 17:14:04] 2025-11-28 22:12:54,171 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3022.794645833335
[2025-11-28 17:14:04] 2025-11-28 22:12:54,202 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898377049/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,203 | INFO     | extracted standard info from prmon json
[2025-11-28 17:14:04] 2025-11-28 22:12:54,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 17:14:04] 2025-11-28 22:12:54,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 17:14:04] 2025-11-28 22:12:54,221 | INFO     | fitting pss+swap vs Time
[2025-11-28 17:14:04] 2025-11-28 22:12:54,222 | INFO     | sum of square deviations: 314715392005.0743
[2025-11-28 17:14:04] 2025-11-28 22:12:54,255 | INFO     | sum of deviations: 2673976189263.6304
[2025-11-28 17:14:04] 2025-11-28 22:12:54,255 | INFO     | mean x: 1764337298.3731344
[2025-11-28 17:14:04] 2025-11-28 22:12:54,256 | INFO     | mean y: 3429026.2676616916
[2025-11-28 17:14:04] 2025-11-28 22:12:54,256 | INFO     | intersect: -14987245232.217337
[2025-11-28 17:14:04] 2025-11-28 22:12:54,257 | INFO     | chi2: 17.284876081501427
[2025-11-28 17:14:04] 2025-11-28 22:12:54,262 | INFO     | sum of square deviations: 310041575941.7748
[2025-11-28 17:14:04] 2025-11-28 22:12:54,285 | INFO     | time since job start (61365s) is within the limit (172800.0s)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,303 | INFO     | sum of deviations: 3106790784787.227
[2025-11-28 17:14:04] 2025-11-28 22:12:54,303 | INFO     | mean x: 1764337145.885
[2025-11-28 17:14:04] 2025-11-28 22:12:54,303 | INFO     | mean y: 3443143.315
[2025-11-28 17:14:04] 2025-11-28 22:12:54,303 | INFO     | intersect: -17676206334.156105
[2025-11-28 17:14:04] 2025-11-28 22:12:54,304 | INFO     | chi2: 13.450342969864588
[2025-11-28 17:14:04] 2025-11-28 22:12:54,304 | INFO     | current chi2=13.450342969864588 (change=22.18432514966435 %)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,305 | INFO     | right removable region: 999
[2025-11-28 17:14:04] 2025-11-28 22:12:54,309 | INFO     | sum of square deviations: 310040121091.7747
[2025-11-28 17:14:04] 2025-11-28 22:12:54,351 | INFO     | sum of deviations: 2226048420221.7275
[2025-11-28 17:14:04] 2025-11-28 22:12:54,351 | INFO     | mean x: 1764337450.885
[2025-11-28 17:14:04] 2025-11-28 22:12:54,351 | INFO     | mean y: 3443634.502
[2025-11-28 17:14:04] 2025-11-28 22:12:54,351 | INFO     | intersect: -12664273632.057858
[2025-11-28 17:14:04] 2025-11-28 22:12:54,356 | INFO     | chi2: 13.798236123352794
[2025-11-28 17:14:04] 2025-11-28 22:12:54,356 | INFO     | current chi2=13.798236123352794 (change=20.171622531214414 %)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,357 | INFO     | left removable region: 10
[2025-11-28 17:14:04] 2025-11-28 22:12:54,357 | INFO     | sum of square deviations: 299919909016.78485
[2025-11-28 17:14:04] 2025-11-28 22:12:54,390 | INFO     | sum of deviations: 2452554685806.447
[2025-11-28 17:14:04] 2025-11-28 22:12:54,390 | INFO     | mean x: 1764337420.4074824
[2025-11-28 17:14:04] 2025-11-28 22:12:54,390 | INFO     | mean y: 3469965.993933266
[2025-11-28 17:14:04] 2025-11-28 22:12:54,390 | INFO     | intersect: -14424161803.932566
[2025-11-28 17:14:04] 2025-11-28 22:12:54,391 | INFO     | chi2: 7.949160623327931
[2025-11-28 17:14:04] 2025-11-28 22:12:54,391 | INFO     | current memory leak: 8.18 B/s (using 989 data points, chi2=7.95)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,392 | INFO     | could have reported an average CPU frequency of 2986 MHz (37 samples)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | ..............................
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . Timing measurements:
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . get job = 0 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . initial setup = 4 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . payload setup = 17 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . stage-in = 0 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . payload execution = 61285 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . stage-out = 5 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | . log creation = 1 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,393 | INFO     | ..............................
[2025-11-28 17:14:04] 2025-11-28 22:12:54,829 | INFO     | 
[2025-11-28 17:14:04] 2025-11-28 22:12:54,829 | INFO     | job summary report
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | --------------------------------------------------
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | PanDA job id: 6898377049
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | task id: 47556161
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | errors: (none)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | pilot state: finished 
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | transexitcode: 0
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | exeerrorcode: 0
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | exeerrordiag: 
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | exitcode: 0
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | exitmsg: OK
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | cpuconsumptiontime: 213962 s
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | nevents: 1000
[2025-11-28 17:14:04] 2025-11-28 22:12:54,830 | INFO     | neventsw: 0
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | pid: 1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | pgrp: 1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | corecount: 12
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | event service: False
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | sizes: {0: 2284309, 1: 2284309, 12: 2284337, 15: 2284627, 22: 2284655, 61306: 2336499, 61307: 2336626, 61313: 2345676, 61315: 2345732, 61330: 2345978}
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | --------------------------------------------------
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | 
[2025-11-28 17:14:04] 2025-11-28 22:12:54,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-28 17:14:04] 2025-11-28 22:12:54,895 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 17:14:04] 2025-11-28 22:12:54,898 | INFO     | job 6898377049 has completed (purged errors)
[2025-11-28 17:14:04] 2025-11-28 22:12:54,898 | INFO     | overall cleanup function is called
[2025-11-28 17:14:04] 2025-11-28 22:12:55,934 | INFO     | --- collectZombieJob: --- 10, [1659084]
[2025-11-28 17:14:04] 2025-11-28 22:12:55,934 | INFO     | zombie collector waiting for pid 1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:55,935 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 17:14:04] 2025-11-28 22:12:55,935 | INFO     | collected zombie processes
[2025-11-28 17:14:04] 2025-11-28 22:12:55,935 | INFO     | will attempt to kill all subprocesses of pid=1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:56,974 | INFO     | process IDs to be killed: [1659084] (in reverse order)
[2025-11-28 17:14:04] 2025-11-28 22:12:57,162 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 17:14:04] 2025-11-28 22:12:57,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 17:14:04] 2025-11-28 22:12:57,184 | INFO     | did not find any defunct processes belonging to 1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:57,200 | INFO     | did not find any defunct processes belonging to 1659084
[2025-11-28 17:14:04] 2025-11-28 22:12:57,201 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 17:14:04] 2025-11-28 22:12:57,202 | INFO     | ready for new job
[2025-11-28 17:14:04] 2025-11-28 22:12:57,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 17:14:04] 2025-11-28 22:12:57,212 | INFO     | ***************************************
[2025-11-28 17:14:04] 2025-11-28 22:12:57,212 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 17:14:04] 2025-11-28 22:12:57,212 | INFO     | ***************************************
[2025-11-28 17:14:04] 2025-11-28 22:12:57,212 | INFO     | 
[2025-11-28 17:14:04] 2025-11-28 22:12:57,221 | INFO     | architecture information:
[2025-11-28 17:14:04] 2025-11-28 22:12:57,229 | INFO     | executing command: cat /etc/os-release
[2025-11-28 17:14:04] 2025-11-28 22:12:57,279 | INFO     | cat /etc/os-release:
[2025-11-28 17:14:04] NAME="CentOS Linux"
[2025-11-28 17:14:04] VERSION="7 (Core)"
[2025-11-28 17:14:04] ID="centos"
[2025-11-28 17:14:04] ID_LIKE="rhel fedora"
[2025-11-28 17:14:04] VERSION_ID="7"
[2025-11-28 17:14:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 17:14:04] ANSI_COLOR="0;31"
[2025-11-28 17:14:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 17:14:04] HOME_URL="https://www.centos.org/"
[2025-11-28 17:14:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 17:14:04] 
[2025-11-28 17:14:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 17:14:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 17:14:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 17:14:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 17:14:04] 
[2025-11-28 17:14:04] 2025-11-28 22:12:57,280 | INFO     | ***************************************
[2025-11-28 17:14:04] 2025-11-28 22:12:57,783 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-28 17:14:04] 2025-11-28 22:12:57,841 | INFO     | sufficient remaining disk space (119747379200 B)
[2025-11-28 17:14:04] 2025-11-28 22:12:57,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 17:14:04] 2025-11-28 22:12:57,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 17:14:04] 2025-11-28 22:12:57,842 | INFO     | update_server=False
[2025-11-28 17:14:04] 2025-11-28 22:12:57,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 17:14:04] 2025-11-28 22:12:57,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 17:14:04] 2025-11-28 22:12:58,281 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 17:14:04] 2025-11-28 22:12:58,281 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 17:14:04] 2025-11-28 22:12:58,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 17:14:04] 2025-11-28 22:12:58,282 | INFO     | will abort loop
[2025-11-28 17:14:04] 2025-11-28 22:12:58,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 17:14:04] 2025-11-28 22:12:58,827 | INFO     | all data control threads have been joined
[2025-11-28 17:14:04] 2025-11-28 22:12:58,848 | INFO     | [job] retrieve thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:58,862 | INFO     | [job] validate thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,005 | INFO     | all payload control threads have been joined
[2025-11-28 17:14:04] 2025-11-28 22:12:59,072 | INFO     | [payload] validate_post thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,073 | INFO     | all job control threads have been joined
[2025-11-28 17:14:04] 2025-11-28 22:12:59,287 | INFO     | [job] job monitor thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 17:14:04] 2025-11-28 22:12:59,753 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,754 | INFO     | [data] copytool_in thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,777 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,833 | INFO     | [data] control thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:12:59,851 | INFO     | [data] copytool_out thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:00,011 | INFO     | [payload] control thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:00,079 | INFO     | [job] control thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:00,249 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:00,418 | INFO     | [payload] failed_post thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:00,505 | INFO     | [job] queue monitor thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:02,537 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 17:14:04] 2025-11-28 22:13:28,368 | INFO     | PID=1634528 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 17:14:04] 2025-11-28 22:13:28,376 | INFO     | .. there are 20 such processes running
[2025-11-28 17:14:04] 2025-11-28 22:13:28,376 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 17:14:04] 2025-11-28 22:13:28,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 17:14:04] 2025-11-28 22:13:28,377 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 17:14:04] 2025-11-28 22:13:57,472 | INFO     | [monitor] cgroup control has ended
[2025-11-28 17:14:04] 2025-11-28 22:13:59,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788701361984)>', '<ExcThread(monitor, started 139788225079040)>']
[2025-11-28 17:14:04] 2025-11-28 22:13:59,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 17:14:04] 2025-11-28 22:13:59,581 | INFO     | [monitor] control thread has ended
[2025-11-28 17:14:04] 2025-11-28 22:14:04,418 | INFO     | all workflow threads have been joined
[2025-11-28 17:14:04] 2025-11-28 22:14:04,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 17:14:04] 2025-11-28 22:14:04,419 | INFO     | traces error code: 0
[2025-11-28 17:14:04] 2025-11-28 22:14:04,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 17:14:04] 2025-11-28 22:14:04,668 [wrapper] ==== pilot stdout END ====
[2025-11-28 17:14:04] 2025-11-28 22:14:04,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 17:14:04] 2025-11-28 22:14:04,676 [wrapper] pilotpid: 1634528
[2025-11-28 17:14:04] 2025-11-28 22:14:04,679 [wrapper] Pilot exit status: 0
[2025-11-28 17:14:04] 2025-11-28 22:14:04,702 [wrapper] pandaids: 6898377049
[2025-11-28 17:14:04] 2025-11-28 22:14:04,802 [wrapper] cleanup supervisor_pilot 4090196 1634529
[2025-11-28 17:14:04] 2025-11-28 22:14:04,806 [wrapper] Test setup, not cleaning
[2025-11-28 17:14:04] 2025-11-28 22:14:04,810 [wrapper] apfmon messages muted
[2025-11-28 17:14:04] 2025-11-28 22:14:04,813 [wrapper] ==== wrapper stdout END ====
[2025-11-28 17:14:04] 2025-11-28 22:14:04,817 [wrapper] ==== wrapper stderr END ====
[2025-11-28 17:14:04]  *** Error codes and diagnostics ***
[2025-11-28 17:14:04]     "exeErrorCode": 0,
[2025-11-28 17:14:04]     "exeErrorDiag": "",
[2025-11-28 17:14:04]     "pilotErrorCode": 0,
[2025-11-28 17:14:04]     "pilotErrorDiag": "",
[2025-11-28 17:14:04]  *** Listing of results directory ***
[2025-11-28 17:14:05] total 1327544
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:04 pilot3.tar.gz
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:07 queuedata.json
[2025-11-28 17:14:05] -rwx------. 1 boincer umatlas     36292 Nov 26 11:08 runpilot2-wrapper.sh
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 17:14:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:09 run_atlas
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:09 job.xml
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas 414646161 Nov 28 00:09 EVNT.47483658._002565.pool.root.1
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:09 start_atlas.sh
[2025-11-28 17:14:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:09 shared
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 28 00:09 input.tar.gz
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:09 boinc_lockfile
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas      2783 Nov 28 00:09 pandaJob.out
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas        57 Nov 28 00:09 setup.sh.local
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas    991858 Nov 28 00:10 agis_schedconf.cvmfs.json
[2025-11-28 17:14:05] drwx------. 5 boincer umatlas      4096 Nov 28 00:10 pilot3
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas       533 Nov 28 16:50 boinc_task_state.xml
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas 920109605 Nov 28 17:10 HITS.47556161._005471.pool.root.1
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas      1053 Nov 28 17:12 memory_monitor_summary.json
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas   1516240 Nov 28 17:12 agis_ddmendpoints.agis.ALL.json
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas   2593718 Nov 28 17:12 log.47556161._005471.job.log.tgz.1
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas        95 Nov 28 17:12 pilot_heartbeat.json
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas      7915 Nov 28 17:12 heartbeat.json
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 17:13 init_data.xml
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas        29 Nov 28 17:14 wrapper_checkpoint.txt
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 17:14 boinc_mmap_file
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas      5011 Nov 28 17:14 pilotlog.txt
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas   7771487 Nov 28 17:14 log.47556161._005471.job.log.1
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas       353 Nov 28 17:14 output.list
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas       620 Nov 28 17:14 runtime_log
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas  10383360 Nov 28 17:14 result.tar.gz
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas      9345 Nov 28 17:14 runtime_log.err
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas       660 Nov 28 17:14 OcfMDm3EXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE1JKDmCANXNm.diag
[2025-11-28 17:14:05] -rw-r--r--. 1 boincer umatlas     21781 Nov 28 17:14 stderr.txt
[2025-11-28 17:14:05] HITS file was successfully produced:
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas 920109605 Nov 28 17:10 shared/HITS.pool.root.1
[2025-11-28 17:14:05]  *** Contents of shared directory: ***
[2025-11-28 17:14:05] total 1314220
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas 414646161 Nov 28 00:09 ATLAS.root_0
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:09 start_atlas.sh
[2025-11-28 17:14:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 28 00:09 input.tar.gz
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas 920109605 Nov 28 17:10 HITS.pool.root.1
[2025-11-28 17:14:05] -rw-------. 1 boincer umatlas  10383360 Nov 28 17:14 result.tar.gz
17:14:06 (1625036): run_atlas exited; CPU time 214399.928491
17:14:06 (1625036): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN