Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:38 (3310554): wrapper (7.7.26015): starting
00:10:38 (3310554): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 00:10:38] Arguments: --nthreads 8
[2025-11-28 00:10:38] Threads: 8
[2025-11-28 00:10:38] Checking for CVMFS
[2025-11-28 00:10:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:10:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:10:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:10:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:10:39] 2.13.3.0 12763 32446 230964 153397 0 379 36855867 40960000 42930 16776704 0 293853498 99.752 177762497 35808 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-28 00:10:39] CVMFS is ok
[2025-11-28 00:10:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:10:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:10:39] Further information can be found at the LHC@home message board.
[2025-11-28 00:10:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:10:39] Checking for apptainer binary...
[2025-11-28 00:10:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:10:39] Running /usr/bin/apptainer --version
[2025-11-28 00:10:39] apptainer version 1.4.4-1.el9
[2025-11-28 00:10:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:10:39] c7-2-17.aglt2.org
[2025-11-28 00:10:39] apptainer works
[2025-11-28 00:10:39] Set ATHENA_PROC_NUMBER=8
[2025-11-28 00:10:39] Set ATHENA_CORE_NUMBER=8
[2025-11-28 00:10:39] Starting ATLAS job with PandaID=6891576659
[2025-11-28 00:10:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 15:24:45]  *** The last 200 lines of the pilot log: ***
[2025-11-29 15:24:45] 2025-11-29 20:23:59,637 | INFO     | time since job start (141171s) is within the limit (172800.0s)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 15:24:45] 2025-11-29 20:24:00,337 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3059.6099791666675
[2025-11-29 15:24:45] 2025-11-29 20:24:00,352 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6891576659/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,352 | INFO     | extracted standard info from prmon json
[2025-11-29 15:24:45] 2025-11-29 20:24:00,352 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 15:24:45] 2025-11-29 20:24:00,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 15:24:45] 2025-11-29 20:24:00,373 | INFO     | fitting pss+swap vs Time
[2025-11-29 15:24:45] 2025-11-29 20:24:00,375 | INFO     | sum of square deviations: 2284675424334.8706
[2025-11-29 15:24:45] 2025-11-29 20:24:00,415 | INFO     | sum of deviations: 8123869782331.392
[2025-11-29 15:24:45] 2025-11-29 20:24:00,416 | INFO     | mean x: 1764395641.0786974
[2025-11-29 15:24:45] 2025-11-29 20:24:00,416 | INFO     | mean y: 2976496.1519674356
[2025-11-29 15:24:45] 2025-11-29 20:24:00,416 | INFO     | intersect: -6270877671.474219
[2025-11-29 15:24:45] 2025-11-29 20:24:00,417 | INFO     | chi2: 6.325240967708079
[2025-11-29 15:24:45] 2025-11-29 20:24:00,419 | INFO     | sum of square deviations: 2271088009520.0684
[2025-11-29 15:24:45] 2025-11-29 20:24:00,460 | INFO     | sum of deviations: 8672020723723.78
[2025-11-29 15:24:45] 2025-11-29 20:24:00,460 | INFO     | mean x: 1764395463.9482641
[2025-11-29 15:24:45] 2025-11-29 20:24:00,460 | INFO     | mean y: 2983639.891763104
[2025-11-29 15:24:45] 2025-11-29 20:24:00,460 | INFO     | intersect: -6734260343.637082
[2025-11-29 15:24:45] 2025-11-29 20:24:00,462 | INFO     | chi2: 3.576601809991934
[2025-11-29 15:24:45] 2025-11-29 20:24:00,462 | INFO     | current chi2=3.576601809991934 (change=43.455090039235316 %)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,463 | INFO     | sum of square deviations: 2257567127031.2393
[2025-11-29 15:24:45] 2025-11-29 20:24:00,506 | INFO     | sum of deviations: 8824846466838.574
[2025-11-29 15:24:45] 2025-11-29 20:24:00,507 | INFO     | mean x: 1764395286.6495903
[2025-11-29 15:24:45] 2025-11-29 20:24:00,507 | INFO     | mean y: 2985641.129781421
[2025-11-29 15:24:45] 2025-11-29 20:24:00,507 | INFO     | intersect: -6894048482.489796
[2025-11-29 15:24:45] 2025-11-29 20:24:00,508 | INFO     | chi2: 3.1488875107061878
[2025-11-29 15:24:45] 2025-11-29 20:24:00,508 | INFO     | current chi2=3.1488875107061878 (change=11.958678153403689 %)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,508 | INFO     | right removable region: 1463
[2025-11-29 15:24:45] 2025-11-29 20:24:00,510 | INFO     | sum of square deviations: 2245125502044.8853
[2025-11-29 15:24:45] 2025-11-29 20:24:00,533 | INFO     | monitor loop #5123: job 0:6891576659 is in state 'finished'
[2025-11-29 15:24:45] 2025-11-29 20:24:00,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,553 | INFO     | sum of deviations: 7122930566586.846
[2025-11-29 15:24:45] 2025-11-29 20:24:00,554 | INFO     | mean x: 1764395943.2811437
[2025-11-29 15:24:45] 2025-11-29 20:24:00,554 | INFO     | mean y: 2984143.0197413205
[2025-11-29 15:24:45] 2025-11-29 20:24:00,554 | INFO     | intersect: -5594774104.575912
[2025-11-29 15:24:45] 2025-11-29 20:24:00,555 | INFO     | chi2: 3.5349966709449614
[2025-11-29 15:24:45] 2025-11-29 20:24:00,555 | INFO     | current chi2=3.5349966709449614 (change=44.11285373961254 %)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,556 | INFO     | sum of square deviations: 2205578682915.9946
[2025-11-29 15:24:45] 2025-11-29 20:24:00,590 | INFO     | sum of deviations: 6822936299522.405
[2025-11-29 15:24:45] 2025-11-29 20:24:00,590 | INFO     | mean x: 1764396246.5020492
[2025-11-29 15:24:45] 2025-11-29 20:24:00,590 | INFO     | mean y: 2986443.1953551914
[2025-11-29 15:24:45] 2025-11-29 20:24:00,591 | INFO     | intersect: -5455156261.141993
[2025-11-29 15:24:45] 2025-11-29 20:24:00,592 | INFO     | chi2: 3.4337982584388387
[2025-11-29 15:24:45] 2025-11-29 20:24:00,592 | INFO     | current chi2=3.4337982584388387 (change=2.8627583538592347 %)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,592 | INFO     | left removable region: 20
[2025-11-29 15:24:45] 2025-11-29 20:24:00,593 | INFO     | sum of square deviations: 2098059880438.9832
[2025-11-29 15:24:45] 2025-11-29 20:24:00,630 | INFO     | sum of deviations: 7022709825905.555
[2025-11-29 15:24:45] 2025-11-29 20:24:00,630 | INFO     | mean x: 1764396470.003465
[2025-11-29 15:24:45] 2025-11-29 20:24:00,630 | INFO     | mean y: 2999393.2896742895
[2025-11-29 15:24:45] 2025-11-29 20:24:00,630 | INFO     | intersect: -5902858939.073001
[2025-11-29 15:24:45] 2025-11-29 20:24:00,631 | INFO     | chi2: 0.14396808394111027
[2025-11-29 15:24:45] 2025-11-29 20:24:00,632 | INFO     | current memory leak: 3.35 B/s (using 1443 data points, chi2=0.14)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,633 | INFO     | could have reported an average CPU frequency of 3143 MHz (53 samples)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,633 | INFO     | ..............................
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . Timing measurements:
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . get job = 0 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . initial setup = 3 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . payload setup = 14 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . stage-in = 0 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . payload execution = 141103 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . stage-out = 3 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | . log creation = 0 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,634 | INFO     | ..............................
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | 
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | job summary report
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | --------------------------------------------------
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | PanDA job id: 6891576659
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | task id: 47493068
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | errors: (none)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | pilot state: finished 
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | transexitcode: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | exeerrorcode: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:00,707 | INFO     | exeerrordiag: 
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | exitcode: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | exitmsg: OK
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | cpuconsumptiontime: 211422 s
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | nevents: 1000
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | neventsw: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | pid: 3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | pgrp: 3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | corecount: 8
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | event service: False
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | sizes: {0: 2284305, 1: 2284305, 11: 2284333, 13: 2284623, 22: 2284679, 141122: 2350056, 141126: 2359108, 141134: 2359394}
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | --------------------------------------------------
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | 
[2025-11-29 15:24:45] 2025-11-29 20:24:00,708 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,737 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 15:24:45] 2025-11-29 20:24:00,738 | INFO     | job 6891576659 has completed (purged errors)
[2025-11-29 15:24:45] 2025-11-29 20:24:00,738 | INFO     | overall cleanup function is called
[2025-11-29 15:24:45] 2025-11-29 20:24:01,755 | INFO     | --- collectZombieJob: --- 10, [3342248]
[2025-11-29 15:24:45] 2025-11-29 20:24:01,758 | INFO     | zombie collector waiting for pid 3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:01,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 15:24:45] 2025-11-29 20:24:01,759 | INFO     | collected zombie processes
[2025-11-29 15:24:45] 2025-11-29 20:24:01,759 | INFO     | will attempt to kill all subprocesses of pid=3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:02,466 | INFO     | process IDs to be killed: [3342248] (in reverse order)
[2025-11-29 15:24:45] 2025-11-29 20:24:02,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 15:24:45] 2025-11-29 20:24:02,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 15:24:45] 2025-11-29 20:24:02,758 | INFO     | did not find any defunct processes belonging to 3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:02,778 | INFO     | did not find any defunct processes belonging to 3342248
[2025-11-29 15:24:45] 2025-11-29 20:24:02,802 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 15:24:45] 2025-11-29 20:24:02,804 | INFO     | ready for new job
[2025-11-29 15:24:45] 2025-11-29 20:24:02,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 15:24:45] 2025-11-29 20:24:02,827 | INFO     | ***************************************
[2025-11-29 15:24:45] 2025-11-29 20:24:02,827 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 15:24:45] 2025-11-29 20:24:02,827 | INFO     | ***************************************
[2025-11-29 15:24:45] 2025-11-29 20:24:02,827 | INFO     | 
[2025-11-29 15:24:45] 2025-11-29 20:24:02,847 | INFO     | architecture information:
[2025-11-29 15:24:45] 2025-11-29 20:24:02,850 | INFO     | executing command: cat /etc/os-release
[2025-11-29 15:24:45] 2025-11-29 20:24:02,888 | INFO     | cat /etc/os-release:
[2025-11-29 15:24:45] NAME="CentOS Linux"
[2025-11-29 15:24:45] VERSION="7 (Core)"
[2025-11-29 15:24:45] ID="centos"
[2025-11-29 15:24:45] ID_LIKE="rhel fedora"
[2025-11-29 15:24:45] VERSION_ID="7"
[2025-11-29 15:24:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 15:24:45] ANSI_COLOR="0;31"
[2025-11-29 15:24:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 15:24:45] HOME_URL="https://www.centos.org/"
[2025-11-29 15:24:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 15:24:45] 
[2025-11-29 15:24:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 15:24:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 15:24:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 15:24:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 15:24:45] 
[2025-11-29 15:24:45] 2025-11-29 20:24:02,888 | INFO     | ***************************************
[2025-11-29 15:24:45] 2025-11-29 20:24:03,392 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-11-29 15:24:45] 2025-11-29 20:24:03,414 | INFO     | sufficient remaining disk space (122891010048 B)
[2025-11-29 15:24:45] 2025-11-29 20:24:03,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 15:24:45] 2025-11-29 20:24:03,415 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 15:24:45] 2025-11-29 20:24:03,415 | INFO     | update_server=False
[2025-11-29 15:24:45] 2025-11-29 20:24:03,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 15:24:45] 2025-11-29 20:24:03,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 15:24:45] 2025-11-29 20:24:03,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 15:24:45] 2025-11-29 20:24:03,822 | INFO     | all data control threads have been joined
[2025-11-29 15:24:45] 2025-11-29 20:24:04,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:24:45] 2025-11-29 20:24:04,072 | INFO     | aborting loop
[2025-11-29 15:24:45] 2025-11-29 20:24:04,325 | INFO     | all payload control threads have been joined
[2025-11-29 15:24:45] 2025-11-29 20:24:04,421 | INFO     | [job] retrieve thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:04,422 | INFO     | [job] validate thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:04,635 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:04,673 | INFO     | [payload] validate_post thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:04,827 | INFO     | [data] control thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:04,900 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,028 | INFO     | [data] copytool_in thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,046 | INFO     | all job control threads have been joined
[2025-11-29 15:24:45] 2025-11-29 20:24:05,060 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,076 | INFO     | [job] job monitor thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,266 | INFO     | [payload] failed_post thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,329 | INFO     | [payload] control thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,406 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,423 | INFO     | [data] copytool_out thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:05,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:24:45] 2025-11-29 20:24:06,052 | INFO     | [job] control thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:06,731 | INFO     | [job] queue monitor thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:07,460 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 15:24:45] 2025-11-29 20:24:33,664 | INFO     | PID=3319225 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 15:24:45] 2025-11-29 20:24:33,665 | INFO     | .. there are 17 such processes running
[2025-11-29 15:24:45] 2025-11-29 20:24:33,665 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 15:24:45] 2025-11-29 20:24:33,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 15:24:45] 2025-11-29 20:24:33,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 15:24:45] 2025-11-29 20:24:38,542 | INFO     | [monitor] cgroup control has ended
[2025-11-29 15:24:45] 2025-11-29 20:24:39,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139807554787136)>', '<ExcThread(monitor, started 139807040706304)>']
[2025-11-29 15:24:45] 2025-11-29 20:24:39,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 15:24:45] 2025-11-29 20:24:39,707 | INFO     | [monitor] control thread has ended
[2025-11-29 15:24:45] 2025-11-29 20:24:44,179 | INFO     | all workflow threads have been joined
[2025-11-29 15:24:45] 2025-11-29 20:24:44,179 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 15:24:45] 2025-11-29 20:24:44,186 | INFO     | traces error code: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:44,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 15:24:45] 2025-11-29 20:24:45,166 [wrapper] ==== pilot stdout END ====
[2025-11-29 15:24:45] 2025-11-29 20:24:45,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 15:24:45] 2025-11-29 20:24:45,191 [wrapper] pilotpid: 3319225
[2025-11-29 15:24:45] 2025-11-29 20:24:45,194 [wrapper] Pilot exit status: 0
[2025-11-29 15:24:45] 2025-11-29 20:24:45,209 [wrapper] pandaids: 6891576659
[2025-11-29 15:24:45] 2025-11-29 20:24:45,361 [wrapper] cleanup supervisor_pilot  327010 3319226
[2025-11-29 15:24:45] 2025-11-29 20:24:45,364 [wrapper] Test setup, not cleaning
[2025-11-29 15:24:45] 2025-11-29 20:24:45,367 [wrapper] apfmon messages muted
[2025-11-29 15:24:45] 2025-11-29 20:24:45,369 [wrapper] ==== wrapper stdout END ====
[2025-11-29 15:24:45] 2025-11-29 20:24:45,371 [wrapper] ==== wrapper stderr END ====
[2025-11-29 15:24:45]  *** Error codes and diagnostics ***
[2025-11-29 15:24:45]     "exeErrorCode": 0,
[2025-11-29 15:24:45]     "exeErrorDiag": "",
[2025-11-29 15:24:45]     "pilotErrorCode": 0,
[2025-11-29 15:24:45]     "pilotErrorDiag": "",
[2025-11-29 15:24:45]  *** Listing of results directory ***
[2025-11-29 15:24:45] total 1332644
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:24 pilot3.tar.gz
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:43 queuedata.json
[2025-11-29 15:24:45] -rwx------. 1 boincer umatlas     36292 Nov 18 11:44 runpilot2-wrapper.sh
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 15:24:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:10 run_atlas
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:10 job.xml
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas 408969735 Nov 28 00:10 EVNT.47493065._000376.pool.root.1
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas     15120 Nov 28 00:10 start_atlas.sh
[2025-11-29 15:24:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:10 shared
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:10 input.tar.gz
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:10 boinc_lockfile
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas      2773 Nov 28 00:10 pandaJob.out
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas    991858 Nov 28 00:11 agis_schedconf.cvmfs.json
[2025-11-29 15:24:45] drwx------. 5 boincer umatlas      4096 Nov 28 00:11 pilot3
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas       533 Nov 29 15:14 boinc_task_state.xml
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas      6947 Nov 29 15:22 init_data.xml
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas 925029997 Nov 29 15:23 HITS.47493068._003754.pool.root.1
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas        98 Nov 29 15:23 pilot_heartbeat.json
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas      1072 Nov 29 15:23 memory_monitor_summary.json
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas   1516240 Nov 29 15:23 agis_ddmendpoints.agis.ALL.json
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas   2443623 Nov 29 15:23 log.47493068._003754.job.log.tgz.1
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas      8634 Nov 29 15:24 heartbeat.json
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 15:24 boinc_mmap_file
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas        29 Nov 29 15:24 wrapper_checkpoint.txt
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas      4826 Nov 29 15:24 pilotlog.txt
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas  10911201 Nov 29 15:24 log.47493068._003754.job.log.1
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas       353 Nov 29 15:24 output.list
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas       620 Nov 29 15:24 runtime_log
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas  13373440 Nov 29 15:24 result.tar.gz
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas      8714 Nov 29 15:24 runtime_log.err
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas       670 Nov 29 15:24 olhMDmhzdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6rFKDmgvlryn.diag
[2025-11-29 15:24:45] -rw-r--r--. 1 boincer umatlas     21356 Nov 29 15:24 stderr.txt
[2025-11-29 15:24:45] HITS file was successfully produced:
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas 925029997 Nov 29 15:23 shared/HITS.pool.root.1
[2025-11-29 15:24:45]  *** Contents of shared directory: ***
[2025-11-29 15:24:45] total 1316404
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas 408969735 Nov 28 00:10 ATLAS.root_0
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas     15120 Nov 28 00:10 start_atlas.sh
[2025-11-29 15:24:45] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:10 input.tar.gz
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas 925029997 Nov 29 15:23 HITS.pool.root.1
[2025-11-29 15:24:45] -rw-------. 1 boincer umatlas  13373440 Nov 29 15:24 result.tar.gz
15:24:47 (3310554): run_atlas exited; CPU time 211300.251511
15:24:47 (3310554): called boinc_finish(0)

</stderr_txt>
]]>

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