Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:28 (821246): wrapper (7.7.26015): starting
00:05:28 (821246): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 00:05:28] Arguments: --nthreads 12
[2025-11-28 00:05:28] Threads: 12
[2025-11-28 00:05:28] Checking for CVMFS
[2025-11-28 00:05:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:05:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:05:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:05:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:05:30] 2.13.2.0 12166 38279 274668 153397 3 91 26538058 40960001 23231 16776704 0 77397889 99.743 44976311 33474 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:05:30] CVMFS is ok
[2025-11-28 00:05:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:05:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:05:30] Further information can be found at the LHC@home message board.
[2025-11-28 00:05:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:05:30] Checking for apptainer binary...
[2025-11-28 00:05:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:05:30] Running /usr/bin/apptainer --version
[2025-11-28 00:05:30] apptainer version 1.4.4-1.el9
[2025-11-28 00:05:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:05:32] c-211-33-1.aglt2.org
[2025-11-28 00:05:32] apptainer works
[2025-11-28 00:05:32] Set ATHENA_PROC_NUMBER=12
[2025-11-28 00:05:32] Set ATHENA_CORE_NUMBER=12
[2025-11-28 00:05:32] Starting ATLAS job with PandaID=6898271610
[2025-11-28 00:05:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 00:47:43]  *** The last 200 lines of the pilot log: ***
[2025-11-29 00:47:43] 2025-11-29 05:46:43,453 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 224665 B
[2025-11-29 00:47:43] 2025-11-29 05:46:43,453 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4898197 B
[2025-11-29 00:47:43] 2025-11-29 05:46:43,453 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13760 B
[2025-11-29 00:47:43] 2025-11-29 05:46:43,453 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-29 00:47:43] 2025-11-29 05:46:45,023 | INFO     | time since job start (88790s) is within the limit (172800.0s)
[2025-11-29 00:47:43] 2025-11-29 05:46:47,033 | INFO     | time since job start (88792s) is within the limit (172800.0s)
[2025-11-29 00:47:43] 2025-11-29 05:46:49,046 | INFO     | time since job start (88794s) is within the limit (172800.0s)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,249 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-29 00:47:43] 2025-11-29 05:46:50,331 | INFO     | sufficient remaining disk space (119333191680 B)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,332 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,359 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2571.9922083333336
[2025-11-29 00:47:43] 2025-11-29 05:46:50,404 | INFO     | size of work directory /tmp/boinchome/slots/5/PanDA_Pilot-6898271610: 10937263 B (within 2537553920 B limit)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,405 | INFO     | pfn file=/tmp/boinchome/slots/5/PanDA_Pilot-6898271610/HITS.47556173._001482.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,405 | INFO     | total size of present files: 0 B (workdir size: 10937263 B)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,405 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/5/PanDA_Pilot-6898271610/HITS.47556173._001482.pool.root.1 since it does not exist
[2025-11-29 00:47:43] 2025-11-29 05:46:50,586 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898271610/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,587 | INFO     | extracted standard info from prmon json
[2025-11-29 00:47:43] 2025-11-29 05:46:50,587 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 00:47:43] 2025-11-29 05:46:50,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 00:47:43] 2025-11-29 05:46:50,834 | INFO     | fitting pss+swap vs Time
[2025-11-29 00:47:43] 2025-11-29 05:46:50,846 | INFO     | sum of square deviations: 951147721581.8064
[2025-11-29 00:47:43] 2025-11-29 05:46:50,904 | INFO     | sum of deviations: 8867862105080.867
[2025-11-29 00:47:43] 2025-11-29 05:46:50,904 | INFO     | mean x: 1764350890.8850653
[2025-11-29 00:47:43] 2025-11-29 05:46:50,905 | INFO     | mean y: 3461184.753613214
[2025-11-29 00:47:43] 2025-11-29 05:46:50,905 | INFO     | intersect: -16446160730.257889
[2025-11-29 00:47:43] 2025-11-29 05:46:50,907 | INFO     | chi2: 17.74319792763225
[2025-11-29 00:47:43] 2025-11-29 05:46:50,909 | INFO     | sum of square deviations: 941364765823.9666
[2025-11-29 00:47:43] 2025-11-29 05:46:50,962 | INFO     | sum of deviations: 9478971216563.906
[2025-11-29 00:47:43] 2025-11-29 05:46:50,963 | INFO     | mean x: 1764350738.4088397
[2025-11-29 00:47:43] 2025-11-29 05:46:50,963 | INFO     | mean y: 3470708.5069060773
[2025-11-29 00:47:43] 2025-11-29 05:46:50,963 | INFO     | intersect: -17762469203.91602
[2025-11-29 00:47:43] 2025-11-29 05:46:50,965 | INFO     | chi2: 14.401790063453438
[2025-11-29 00:47:43] 2025-11-29 05:46:50,965 | INFO     | current chi2=14.401790063453438 (change=18.832049768069663 %)
[2025-11-29 00:47:43] 2025-11-29 05:46:50,965 | INFO     | right removable region: 1447
[2025-11-29 00:47:43] 2025-11-29 05:46:50,967 | INFO     | sum of square deviations: 941358663383.967
[2025-11-29 00:47:43] 2025-11-29 05:46:51,017 | INFO     | sum of deviations: 8172304311350.622
[2025-11-29 00:47:43] 2025-11-29 05:46:51,017 | INFO     | mean x: 1764351043.4088397
[2025-11-29 00:47:43] 2025-11-29 05:46:51,019 | INFO     | mean y: 3472020.732044199
[2025-11-29 00:47:43] 2025-11-29 05:46:51,019 | INFO     | intersect: -15313552403.257132
[2025-11-29 00:47:43] 2025-11-29 05:46:51,021 | INFO     | chi2: 13.561515557677257
[2025-11-29 00:47:43] 2025-11-29 05:46:51,021 | INFO     | current chi2=13.561515557677257 (change=23.56780545993164 %)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,021 | INFO     | left removable region: 10
[2025-11-29 00:47:43] 2025-11-29 05:46:51,023 | INFO     | sum of square deviations: 920066803174.8959
[2025-11-29 00:47:43] 2025-11-29 05:46:51,057 | INFO     | time since job start (88796s) is within the limit (172800.0s)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,069 | INFO     | sum of deviations: 8179427088652.25
[2025-11-29 00:47:43] 2025-11-29 05:46:51,070 | INFO     | mean x: 1764351012.9617257
[2025-11-29 00:47:43] 2025-11-29 05:46:51,070 | INFO     | mean y: 3493562.67710508
[2025-11-29 00:47:43] 2025-11-29 05:46:51,070 | INFO     | intersect: -15681650624.14876
[2025-11-29 00:47:43] 2025-11-29 05:46:51,072 | INFO     | chi2: 5.963232233981787
[2025-11-29 00:47:43] 2025-11-29 05:46:51,072 | INFO     | current memory leak: 8.89 B/s (using 1437 data points, chi2=5.96)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | could have reported an average CPU frequency of 2527 MHz (52 samples)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | ..............................
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | . Timing measurements:
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | . get job = 0 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | . initial setup = 8 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,077 | INFO     | . payload setup = 59 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,078 | INFO     | . stage-in = 0 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,078 | INFO     | . payload execution = 88629 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,078 | INFO     | . stage-out = 4 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,078 | INFO     | . log creation = 1 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,078 | INFO     | ..............................
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | 
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | job summary report
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | --------------------------------------------------
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | PanDA job id: 6898271610
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | task id: 47556173
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | errors: (none)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | pilot state: finished 
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | transexitcode: 0
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | exeerrorcode: 0
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | exeerrordiag: 
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | exitcode: 0
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | exitmsg: OK
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | cpuconsumptiontime: 288878 s
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | nevents: 1000
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | neventsw: 0
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | pid: 856645
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | pgrp: 856645
[2025-11-29 00:47:43] 2025-11-29 05:46:51,344 | INFO     | corecount: 12
[2025-11-29 00:47:43] 2025-11-29 05:46:51,345 | INFO     | event service: False
[2025-11-29 00:47:43] 2025-11-29 05:46:51,345 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284200, 3: 2284371, 4: 2284399, 14: 2284427, 25: 2284583, 36: 2284611, 40: 2284901, 48: 2284929, 88692: 2349874, 88697: 2358924
[2025-11-29 00:47:43] 2025-11-29 05:46:51,345 | INFO     | --------------------------------------------------
[2025-11-29 00:47:43] 2025-11-29 05:46:51,345 | INFO     | 
[2025-11-29 00:47:43] 2025-11-29 05:46:51,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-29 00:47:43] 2025-11-29 05:46:51,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | job 6898271610 has completed (purged errors)
[2025-11-29 00:47:43] 2025-11-29 05:46:51,404 | INFO     | overall cleanup function is called
[2025-11-29 00:47:43] 2025-11-29 05:46:51,952 | INFO     | number of running child processes to parent process 856645: 1
[2025-11-29 00:47:43] 2025-11-29 05:46:51,954 | INFO     | maximum number of monitored processes: 20
[2025-11-29 00:47:43] 2025-11-29 05:46:51,954 | INFO     | aborting job monitoring since job object (job id=6898271610) has expired
[2025-11-29 00:47:43] 2025-11-29 05:46:52,556 | INFO     | --- collectZombieJob: --- 10, [856645]
[2025-11-29 00:47:43] 2025-11-29 05:46:52,556 | INFO     | zombie collector waiting for pid 856645
[2025-11-29 00:47:43] 2025-11-29 05:46:52,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 00:47:43] 2025-11-29 05:46:52,556 | INFO     | collected zombie processes
[2025-11-29 00:47:43] 2025-11-29 05:46:52,556 | INFO     | will attempt to kill all subprocesses of pid=856645
[2025-11-29 00:47:43] 2025-11-29 05:46:53,059 | INFO     | process IDs to be killed: [856645] (in reverse order)
[2025-11-29 00:47:43] 2025-11-29 05:46:53,219 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 00:47:43] 2025-11-29 05:46:53,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 00:47:43] 2025-11-29 05:46:53,235 | INFO     | did not find any defunct processes belonging to 856645
[2025-11-29 00:47:43] 2025-11-29 05:46:53,251 | INFO     | did not find any defunct processes belonging to 856645
[2025-11-29 00:47:43] 2025-11-29 05:46:53,253 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 00:47:43] 2025-11-29 05:46:53,253 | INFO     | ready for new job
[2025-11-29 00:47:43] 2025-11-29 05:46:53,254 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 00:47:43] 2025-11-29 05:46:53,259 | INFO     | ***************************************
[2025-11-29 00:47:43] 2025-11-29 05:46:53,259 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 00:47:43] 2025-11-29 05:46:53,259 | INFO     | ***************************************
[2025-11-29 00:47:43] 2025-11-29 05:46:53,259 | INFO     | 
[2025-11-29 00:47:43] 2025-11-29 05:46:53,264 | INFO     | architecture information:
[2025-11-29 00:47:43] 2025-11-29 05:46:53,268 | INFO     | executing command: cat /etc/os-release
[2025-11-29 00:47:43] 2025-11-29 05:46:53,293 | INFO     | cat /etc/os-release:
[2025-11-29 00:47:43] NAME="CentOS Linux"
[2025-11-29 00:47:43] VERSION="7 (Core)"
[2025-11-29 00:47:43] ID="centos"
[2025-11-29 00:47:43] ID_LIKE="rhel fedora"
[2025-11-29 00:47:43] VERSION_ID="7"
[2025-11-29 00:47:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 00:47:43] ANSI_COLOR="0;31"
[2025-11-29 00:47:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 00:47:43] HOME_URL="https://www.centos.org/"
[2025-11-29 00:47:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 00:47:43] 
[2025-11-29 00:47:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 00:47:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 00:47:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 00:47:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 00:47:43] 
[2025-11-29 00:47:43] 2025-11-29 05:46:53,294 | INFO     | ***************************************
[2025-11-29 00:47:43] 2025-11-29 05:46:53,797 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-29 00:47:43] 2025-11-29 05:46:53,888 | INFO     | sufficient remaining disk space (119335288832 B)
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | INFO     | update_server=False
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | INFO     | aborting loop
[2025-11-29 00:47:43] 2025-11-29 05:46:53,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 00:47:43] 2025-11-29 05:46:53,902 | INFO     | all payload control threads have been joined
[2025-11-29 00:47:43] 2025-11-29 05:46:53,981 | INFO     | all job control threads have been joined
[2025-11-29 00:47:43] 2025-11-29 05:46:54,894 | INFO     | [job] retrieve thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:54,895 | INFO     | [job] job monitor thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:54,910 | INFO     | [payload] control thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:54,921 | INFO     | all data control threads have been joined
[2025-11-29 00:47:43] 2025-11-29 05:46:54,987 | INFO     | [job] control thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,134 | INFO     | [payload] validate_post thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,309 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,395 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,602 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,731 | INFO     | [data] copytool_in thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,897 | INFO     | [data] copytool_out thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:55,928 | INFO     | [data] control thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:56,012 | INFO     | [job] validate thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:56,073 | INFO     | [payload] failed_post thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:56,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 00:47:43] 2025-11-29 05:46:56,300 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:46:56,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 00:47:43] 2025-11-29 05:46:57,206 | INFO     | [job] queue monitor thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:47:00,581 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 00:47:43] 2025-11-29 05:47:24,687 | INFO     | PID=831871 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 00:47:43] 2025-11-29 05:47:24,687 | INFO     | .. there are 19 such processes running
[2025-11-29 00:47:43] 2025-11-29 05:47:24,688 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 00:47:43] 2025-11-29 05:47:24,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 00:47:43] 2025-11-29 05:47:24,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 00:47:43] 2025-11-29 05:47:36,313 | INFO     | [monitor] cgroup control has ended
[2025-11-29 00:47:43] 2025-11-29 05:47:37,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201816246080)>', '<ExcThread(monitor, started 140201313675008)>']
[2025-11-29 00:47:43] 2025-11-29 05:47:38,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 00:47:43] 2025-11-29 05:47:38,772 | INFO     | [monitor] control thread has ended
[2025-11-29 00:47:43] 2025-11-29 05:47:42,934 | INFO     | all workflow threads have been joined
[2025-11-29 00:47:43] 2025-11-29 05:47:42,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 00:47:43] 2025-11-29 05:47:42,934 | INFO     | traces error code: 0
[2025-11-29 00:47:43] 2025-11-29 05:47:42,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 00:47:43] 2025-11-29 05:47:43,133 [wrapper] ==== pilot stdout END ====
[2025-11-29 00:47:43] 2025-11-29 05:47:43,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 00:47:43] 2025-11-29 05:47:43,169 [wrapper] pilotpid: 831871
[2025-11-29 00:47:43] 2025-11-29 05:47:43,222 [wrapper] Pilot exit status: 0
[2025-11-29 00:47:43] 2025-11-29 05:47:43,345 [wrapper] pandaids: 6898271610
[2025-11-29 00:47:43] 2025-11-29 05:47:43,547 [wrapper] cleanup supervisor_pilot 3749143 831872
[2025-11-29 00:47:43] 2025-11-29 05:47:43,552 [wrapper] Test setup, not cleaning
[2025-11-29 00:47:43] 2025-11-29 05:47:43,555 [wrapper] apfmon messages muted
[2025-11-29 00:47:43] 2025-11-29 05:47:43,559 [wrapper] ==== wrapper stdout END ====
[2025-11-29 00:47:43] 2025-11-29 05:47:43,562 [wrapper] ==== wrapper stderr END ====
[2025-11-29 00:47:43]  *** Error codes and diagnostics ***
[2025-11-29 00:47:43]     "exeErrorCode": 0,
[2025-11-29 00:47:43]     "exeErrorDiag": "",
[2025-11-29 00:47:43]     "pilotErrorCode": 0,
[2025-11-29 00:47:43]     "pilotErrorDiag": "",
[2025-11-29 00:47:43]  *** Listing of results directory ***
[2025-11-29 00:47:43] total 1323304
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-29 00:47:43] -rwx------. 1 boincer umatlas     36292 Nov 26 10:26 runpilot2-wrapper.sh
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:26 queuedata.json
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 00:47:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:05 run_atlas
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:05 job.xml
[2025-11-29 00:47:43] -rw-r--r--. 2 boincer umatlas 410467440 Nov 28 00:05 EVNT.47483658._003192.pool.root.1
[2025-11-29 00:47:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:05 start_atlas.sh
[2025-11-29 00:47:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:05 shared
[2025-11-29 00:47:43] -rw-r--r--. 2 boincer umatlas    590104 Nov 28 00:05 input.tar.gz
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:05 boinc_lockfile
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas      2786 Nov 28 00:05 pandaJob.out
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas        57 Nov 28 00:05 setup.sh.local
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas    991858 Nov 28 00:06 agis_schedconf.cvmfs.json
[2025-11-29 00:47:43] drwx------. 5 boincer umatlas      4096 Nov 28 00:06 pilot3
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas       533 Nov 29 00:31 boinc_task_state.xml
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas 913429974 Nov 29 00:45 HITS.47556173._001482.pool.root.1
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas      6881 Nov 29 00:46 init_data.xml
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas      1072 Nov 29 00:46 memory_monitor_summary.json
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas   1516240 Nov 29 00:46 agis_ddmendpoints.agis.ALL.json
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas   2918159 Nov 29 00:46 log.47556173._001482.job.log.tgz.1
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas      8657 Nov 29 00:46 heartbeat.json
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas        95 Nov 29 00:47 pilot_heartbeat.json
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 00:47 boinc_mmap_file
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas        29 Nov 29 00:47 wrapper_checkpoint.txt
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas      4824 Nov 29 00:47 pilotlog.txt
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas  10704923 Nov 29 00:47 log.47556173._001482.job.log.1
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas       353 Nov 29 00:47 output.list
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas       620 Nov 29 00:47 runtime_log
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas  13639680 Nov 29 00:47 result.tar.gz
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas      9355 Nov 29 00:47 runtime_log.err
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas       666 Nov 29 00:47 PSwMDm9aWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmg4MKDmQGNNHo.diag
[2025-11-29 00:47:43] -rw-r--r--. 1 boincer umatlas     21991 Nov 29 00:47 stderr.txt
[2025-11-29 00:47:43] HITS file was successfully produced:
[2025-11-29 00:47:43] -rw-------. 1 boincer umatlas 913429974 Nov 29 00:45 shared/HITS.pool.root.1
[2025-11-29 00:47:44]  *** Contents of shared directory: ***
[2025-11-29 00:47:44] total 1306796
[2025-11-29 00:47:44] -rw-r--r--. 2 boincer umatlas 410467440 Nov 28 00:05 ATLAS.root_0
[2025-11-29 00:47:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:05 start_atlas.sh
[2025-11-29 00:47:44] -rw-r--r--. 2 boincer umatlas    590104 Nov 28 00:05 input.tar.gz
[2025-11-29 00:47:44] -rw-------. 1 boincer umatlas 913429974 Nov 29 00:45 HITS.pool.root.1
[2025-11-29 00:47:44] -rw-------. 1 boincer umatlas  13639680 Nov 29 00:47 result.tar.gz
00:47:45 (821246): run_atlas exited; CPU time 290738.063273
00:47:45 (821246): called boinc_finish(0)

</stderr_txt>
]]>

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