Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
04:56:56 (469087): wrapper (7.7.26015): starting
04:56:56 (469087): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 04:56:56] Arguments: --nthreads 8
[2025-11-28 04:56:56] Threads: 8
[2025-11-28 04:56:56] Checking for CVMFS
[2025-11-28 04:56:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:56:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:56:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:56:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:56:56] 2.13.3.0 4370 476 46180 153397 0 90 3541871 4096000 3708 130560 0 1427157 99.996 20080 2627 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-28 04:56:56] CVMFS is ok
[2025-11-28 04:56:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:56:57] Checking for apptainer binary...
[2025-11-28 04:56:57] apptainer is not installed, using version from CVMFS
[2025-11-28 04:56:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:56:57] senture-c621e-l
[2025-11-28 04:56:57] apptainer works
[2025-11-28 04:56:57] Set ATHENA_PROC_NUMBER=8
[2025-11-28 04:56:57] Set ATHENA_CORE_NUMBER=8
[2025-11-28 04:56:57] Starting ATLAS job with PandaID=6892528005
[2025-11-28 04:56:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:50:07]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:50:07] 2025-11-28 12:49:34,175 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 12:50:07] 2025-11-28 12:49:34,179 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-28 12:50:07] 2025-11-28 12:49:34,189 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6892528005/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,190 | INFO     | extracted standard info from prmon json
[2025-11-28 12:50:07] 2025-11-28 12:49:34,190 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:50:07] 2025-11-28 12:49:34,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:50:07] 2025-11-28 12:49:34,197 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:50:07] 2025-11-28 12:49:34,198 | INFO     | sum of square deviations: 31177055143.023525
[2025-11-28 12:50:07] 2025-11-28 12:49:34,202 | INFO     | sum of deviations: 239071056777.73312
[2025-11-28 12:50:07] 2025-11-28 12:49:34,202 | INFO     | mean x: 1764320002.907527
[2025-11-28 12:50:07] 2025-11-28 12:49:34,202 | INFO     | mean y: 2836308.1333333333
[2025-11-28 12:50:07] 2025-11-28 12:49:34,202 | INFO     | intersect: -13526274945.454103
[2025-11-28 12:50:07] 2025-11-28 12:49:34,203 | INFO     | chi2: 6.345479236227916
[2025-11-28 12:50:07] 2025-11-28 12:49:34,204 | INFO     | sum of square deviations: 30182244263.86098
[2025-11-28 12:50:07] 2025-11-28 12:49:34,208 | INFO     | sum of deviations: 408700037793.4694
[2025-11-28 12:50:07] 2025-11-28 12:49:34,208 | INFO     | mean x: 1764319850.4173913
[2025-11-28 12:50:07] 2025-11-28 12:49:34,208 | INFO     | mean y: 2862314.591304348
[2025-11-28 12:50:07] 2025-11-28 12:49:34,208 | INFO     | intersect: -23887925369.767403
[2025-11-28 12:50:07] 2025-11-28 12:49:34,209 | INFO     | chi2: 2.538163312279916
[2025-11-28 12:50:07] 2025-11-28 12:49:34,209 | INFO     | current chi2=2.538163312279916 (change=60.000447282391036 %)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,209 | INFO     | sum of square deviations: 29208829134.606518
[2025-11-28 12:50:07] 2025-11-28 12:49:34,213 | INFO     | sum of deviations: 464800706499.224
[2025-11-28 12:50:07] 2025-11-28 12:49:34,213 | INFO     | mean x: 1764319697.9274726
[2025-11-28 12:50:07] 2025-11-28 12:49:34,213 | INFO     | mean y: 2871080.734065934
[2025-11-28 12:50:07] 2025-11-28 12:49:34,213 | INFO     | intersect: -28072785026.808636
[2025-11-28 12:50:07] 2025-11-28 12:49:34,214 | INFO     | chi2: 1.9429339498136309
[2025-11-28 12:50:07] 2025-11-28 12:49:34,214 | INFO     | current chi2=1.9429339498136309 (change=23.451184546971405 %)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,214 | INFO     | right removable region: 454
[2025-11-28 12:50:07] 2025-11-28 12:49:34,215 | INFO     | sum of square deviations: 30181986843.860985
[2025-11-28 12:50:07] 2025-11-28 12:49:34,219 | INFO     | sum of deviations: 134922381213.21721
[2025-11-28 12:50:07] 2025-11-28 12:49:34,219 | INFO     | mean x: 1764320155.4173913
[2025-11-28 12:50:07] 2025-11-28 12:49:34,219 | INFO     | mean y: 2852209.347826087
[2025-11-28 12:50:07] 2025-11-28 12:49:34,219 | INFO     | intersect: -7884179145.574605
[2025-11-28 12:50:07] 2025-11-28 12:49:34,220 | INFO     | chi2: 4.54060353562236
[2025-11-28 12:50:07] 2025-11-28 12:49:34,220 | INFO     | current chi2=4.54060353562236 (change=28.443489189927107 %)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,220 | INFO     | sum of square deviations: 29208342233.459385
[2025-11-28 12:50:07] 2025-11-28 12:49:34,224 | INFO     | sum of deviations: 114750223337.13608
[2025-11-28 12:50:07] 2025-11-28 12:49:34,224 | INFO     | mean x: 1764320307.9252746
[2025-11-28 12:50:07] 2025-11-28 12:49:34,224 | INFO     | mean y: 2855367.70989011
[2025-11-28 12:50:07] 2025-11-28 12:49:34,225 | INFO     | intersect: -6928594139.230901
[2025-11-28 12:50:07] 2025-11-28 12:49:34,225 | INFO     | chi2: 4.520726692628109
[2025-11-28 12:50:07] 2025-11-28 12:49:34,225 | INFO     | current chi2=4.520726692628109 (change=0.43775773062569273 %)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,225 | INFO     | left removable region: 20
[2025-11-28 12:50:07] 2025-11-28 12:49:34,226 | INFO     | sum of square deviations: 25348038931.48387
[2025-11-28 12:50:07] 2025-11-28 12:49:34,229 | INFO     | sum of deviations: 297416841702.48395
[2025-11-28 12:50:07] 2025-11-28 12:49:34,230 | INFO     | mean x: 1764320277.451613
[2025-11-28 12:50:07] 2025-11-28 12:49:34,230 | INFO     | mean y: 2897762.380184332
[2025-11-28 12:50:07] 2025-11-28 12:49:34,230 | INFO     | intersect: -20698449828.63801
[2025-11-28 12:50:07] 2025-11-28 12:49:34,230 | INFO     | chi2: 0.0537218929969816
[2025-11-28 12:50:07] 2025-11-28 12:49:34,231 | INFO     | current memory leak: 11.73 B/s (using 434 data points, chi2=0.05)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,231 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | ..............................
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . Timing measurements:
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . get job = 0 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . initial setup = 1 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . payload setup = 5 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . stage-in = 0 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . payload execution = 28316 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . stage-out = 2 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | . log creation = 0 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,232 | INFO     | ..............................
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | 
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | job summary report
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | --------------------------------------------------
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | PanDA job id: 6892528005
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | task id: 47493029
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | errors: (none)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | pilot state: finished 
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | transexitcode: 0
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | exeerrorcode: 0
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | exeerrordiag: 
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | exitcode: 0
[2025-11-28 12:50:07] 2025-11-28 12:49:34,316 | INFO     | exitmsg: OK
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | cpuconsumptiontime: 219888 s
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | nevents: 1000
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | neventsw: 0
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | pid: 480034
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | pgrp: 480034
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | corecount: 8
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | event service: False
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | sizes: {0: 2284311, 4: 2284573, 11: 2284601, 28325: 2322167, 28327: 2331175, 28328: 2331231, 28333: 2331605}
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | --------------------------------------------------
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | 
[2025-11-28 12:50:07] 2025-11-28 12:49:34,317 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-28 12:50:07] 2025-11-28 12:49:34,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:50:07] 2025-11-28 12:49:34,352 | INFO     | job 6892528005 has completed (purged errors)
[2025-11-28 12:50:07] 2025-11-28 12:49:34,352 | INFO     | overall cleanup function is called
[2025-11-28 12:50:07] 2025-11-28 12:49:35,367 | INFO     | --- collectZombieJob: --- 10, [480034]
[2025-11-28 12:50:07] 2025-11-28 12:49:35,368 | INFO     | zombie collector waiting for pid 480034
[2025-11-28 12:50:07] 2025-11-28 12:49:35,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:50:07] 2025-11-28 12:49:35,368 | INFO     | collected zombie processes
[2025-11-28 12:50:07] 2025-11-28 12:49:35,368 | INFO     | will attempt to kill all subprocesses of pid=480034
[2025-11-28 12:50:07] 2025-11-28 12:49:35,624 | INFO     | process IDs to be killed: [480034] (in reverse order)
[2025-11-28 12:50:07] 2025-11-28 12:49:35,743 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:50:07] 2025-11-28 12:49:35,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:50:07] 2025-11-28 12:49:35,750 | INFO     | did not find any defunct processes belonging to 480034
[2025-11-28 12:50:07] 2025-11-28 12:49:35,757 | INFO     | did not find any defunct processes belonging to 480034
[2025-11-28 12:50:07] 2025-11-28 12:49:35,760 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:50:07] 2025-11-28 12:49:35,760 | INFO     | ready for new job
[2025-11-28 12:50:07] 2025-11-28 12:49:35,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:50:07] 2025-11-28 12:49:35,763 | INFO     | ***************************************
[2025-11-28 12:50:07] 2025-11-28 12:49:35,763 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:50:07] 2025-11-28 12:49:35,763 | INFO     | ***************************************
[2025-11-28 12:50:07] 2025-11-28 12:49:35,763 | INFO     | 
[2025-11-28 12:50:07] 2025-11-28 12:49:35,766 | INFO     | pilot is running in a VM
[2025-11-28 12:50:07] 2025-11-28 12:49:35,767 | INFO     | architecture information:
[2025-11-28 12:50:07] 2025-11-28 12:49:35,767 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:50:07] 2025-11-28 12:49:35,785 | INFO     | cat /etc/os-release:
[2025-11-28 12:50:07] NAME="CentOS Linux"
[2025-11-28 12:50:07] VERSION="7 (Core)"
[2025-11-28 12:50:07] ID="centos"
[2025-11-28 12:50:07] ID_LIKE="rhel fedora"
[2025-11-28 12:50:07] VERSION_ID="7"
[2025-11-28 12:50:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:50:07] ANSI_COLOR="0;31"
[2025-11-28 12:50:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:50:07] HOME_URL="https://www.centos.org/"
[2025-11-28 12:50:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:50:07] 
[2025-11-28 12:50:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:50:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:50:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:50:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:50:07] 
[2025-11-28 12:50:07] 2025-11-28 12:49:35,786 | INFO     | ***************************************
[2025-11-28 12:50:07] 2025-11-28 12:49:36,289 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-28 12:50:07] 2025-11-28 12:49:36,318 | INFO     | sufficient remaining disk space (105446899712 B)
[2025-11-28 12:50:07] 2025-11-28 12:49:36,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:50:07] 2025-11-28 12:49:36,319 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:50:07] 2025-11-28 12:49:36,319 | INFO     | update_server=False
[2025-11-28 12:50:07] 2025-11-28 12:49:36,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:50:07] 2025-11-28 12:49:36,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:50:07] 2025-11-28 12:49:36,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:50:07] 2025-11-28 12:49:36,661 | INFO     | all data control threads have been joined
[2025-11-28 12:50:07] 2025-11-28 12:49:36,843 | INFO     | all payload control threads have been joined
[2025-11-28 12:50:07] 2025-11-28 12:49:37,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:50:07] 2025-11-28 12:49:37,076 | INFO     | aborting loop
[2025-11-28 12:50:07] 2025-11-28 12:49:37,325 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,325 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,345 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,435 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,641 | INFO     | all job control threads have been joined
[2025-11-28 12:50:07] 2025-11-28 12:49:37,667 | INFO     | [data] control thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,811 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,848 | INFO     | [payload] control thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:37,884 | INFO     | [job] validate thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,010 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,082 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,301 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,303 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,530 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:38,643 | INFO     | [job] control thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:39,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:50:07] 2025-11-28 12:49:43,809 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:50:07] 2025-11-28 12:49:52,857 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:50:07] 2025-11-28 12:49:53,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137031591356224)>', '<ExcThread(monitor, started 137030898005760)>']
[2025-11-28 12:50:07] 2025-11-28 12:49:58,658 | INFO     | all workflow threads have been joined
[2025-11-28 12:50:07] 2025-11-28 12:49:58,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:50:07] 2025-11-28 12:49:58,658 | INFO     | traces error code: 0
[2025-11-28 12:50:07] 2025-11-28 12:49:58,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:50:07] 2025-11-28 12:50:05,395 | INFO     | 28350s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 12:50:07] 2025-11-28 12:50:06,704 | INFO     | PID=473103 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 12:50:07] 2025-11-28 12:50:06,704 | INFO     | .. there are 8 such processes running
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 12:50:07] 2025-11-28 12:50:06,705 | INFO     | [monitor] control thread has ended
[2025-11-28 12:50:07] 2025-11-28 12:50:06,862 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:50:07] 2025-11-28 12:50:06,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:50:07] 2025-11-28 12:50:06,868 [wrapper] pilotpid: 473103
[2025-11-28 12:50:07] 2025-11-28 12:50:06,871 [wrapper] Pilot exit status: 0
[2025-11-28 12:50:07] 2025-11-28 12:50:06,882 [wrapper] pandaids: 6892528005
[2025-11-28 12:50:07] 2025-11-28 12:50:06,941 [wrapper] cleanup supervisor_pilot  901503 473104
[2025-11-28 12:50:07] 2025-11-28 12:50:06,944 [wrapper] Test setup, not cleaning
[2025-11-28 12:50:07] 2025-11-28 12:50:06,947 [wrapper] apfmon messages muted
[2025-11-28 12:50:07] 2025-11-28 12:50:06,951 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:50:07] 2025-11-28 12:50:06,954 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:50:07]  *** Error codes and diagnostics ***
[2025-11-28 12:50:07]     "exeErrorCode": 0,
[2025-11-28 12:50:07]     "exeErrorDiag": "",
[2025-11-28 12:50:07]     "pilotErrorCode": 0,
[2025-11-28 12:50:07]     "pilotErrorDiag": "",
[2025-11-28 12:50:07]  *** Listing of results directory ***
[2025-11-28 12:50:07] total 1293500
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc    576529 Nov 19 07:00 pilot3.tar.gz
[2025-11-28 12:50:07] -rwx------ 1 boinc boinc     36292 Nov 19 07:11 runpilot2-wrapper.sh
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc      5112 Nov 19 07:12 queuedata.json
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc       100 Nov 28 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:50:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 04:56 run_atlas
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc       105 Nov 28 04:56 job.xml
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc 409947197 Nov 28 04:56 EVNT.47493027._000144.pool.root.1
[2025-11-28 12:50:07] drwxrwx--x 2 boinc boinc      4096 Nov 28 04:56 shared
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc    590097 Nov 28 04:56 input.tar.gz
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc     15120 Nov 28 04:56 start_atlas.sh
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:56 boinc_setup_complete
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc      6662 Nov 28 04:56 init_data.xml
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:56 boinc_lockfile
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc      2773 Nov 28 04:56 pandaJob.out
[2025-11-28 12:50:07] -rw------- 1 boinc boinc    991858 Nov 28 04:57 agis_schedconf.cvmfs.json
[2025-11-28 12:50:07] drwx------ 5 boinc boinc      4096 Nov 28 04:57 pilot3
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc       533 Nov 28 12:39 boinc_task_state.xml
[2025-11-28 12:50:07] -rw------- 1 boinc boinc 899228621 Nov 28 12:48 HITS.47493029._001393.pool.root.1
[2025-11-28 12:50:07] -rw------- 1 boinc boinc        95 Nov 28 12:49 pilot_heartbeat.json
[2025-11-28 12:50:07] -rw------- 1 boinc boinc      1044 Nov 28 12:49 memory_monitor_summary.json
[2025-11-28 12:50:07] -rw------- 1 boinc boinc   1516240 Nov 28 12:49 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:50:07] -rw------- 1 boinc boinc   1759500 Nov 28 12:49 log.47493029._001393.job.log.tgz.1
[2025-11-28 12:50:07] -rw------- 1 boinc boinc      8608 Nov 28 12:49 heartbeat.json
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc      8192 Nov 28 12:49 boinc_mmap_file
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc        29 Nov 28 12:49 wrapper_checkpoint.txt
[2025-11-28 12:50:07] -rw------- 1 boinc boinc      1007 Nov 28 12:50 pilotlog.txt
[2025-11-28 12:50:07] -rw------- 1 boinc boinc   3967193 Nov 28 12:50 log.47493029._001393.job.log.1
[2025-11-28 12:50:07] -rw------- 1 boinc boinc       353 Nov 28 12:50 output.list
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc       620 Nov 28 12:50 runtime_log
[2025-11-28 12:50:07] -rw------- 1 boinc boinc   5744640 Nov 28 12:50 result.tar.gz
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc      8793 Nov 28 12:50 runtime_log.err
[2025-11-28 12:50:07] -rw------- 1 boinc boinc       657 Nov 28 12:50 kaMLDmHXrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFlGKDmVXdVDn.diag
[2025-11-28 12:50:07] -rw-r--r-- 1 boinc boinc     20974 Nov 28 12:50 stderr.txt
[2025-11-28 12:50:07] HITS file was successfully produced:
[2025-11-28 12:50:07] -rw------- 1 boinc boinc 899228621 Nov 28 12:48 shared/HITS.pool.root.1
[2025-11-28 12:50:07]  *** Contents of shared directory: ***
[2025-11-28 12:50:07] total 1284712
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc 409947197 Nov 28 04:56 ATLAS.root_0
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc    590097 Nov 28 04:56 input.tar.gz
[2025-11-28 12:50:07] -rw-r--r-- 2 boinc boinc     15120 Nov 28 04:56 start_atlas.sh
[2025-11-28 12:50:07] -rw------- 1 boinc boinc 899228621 Nov 28 12:48 HITS.pool.root.1
[2025-11-28 12:50:07] -rw------- 1 boinc boinc   5744640 Nov 28 12:50 result.tar.gz
12:50:08 (469087): run_atlas exited; CPU time 220185.712768
12:50:08 (469087): called boinc_finish(0)

</stderr_txt>
]]>

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