Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
05:01:09 (489375): wrapper (7.7.26015): starting
05:01:09 (489375): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 05:01:09] Arguments: --nthreads 8
[2025-11-28 05:01:09] Threads: 8
[2025-11-28 05:01:09] Checking for CVMFS
[2025-11-28 05:01:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 05:01:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 05:01:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 05:01:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 05:01:09] 2.13.3.0 4370 480 46432 153397 3 90 3544089 4096000 3129 130560 0 1501260 99.996 20081 2594 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-28 05:01:09] CVMFS is ok
[2025-11-28 05:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 05:01:09] Checking for apptainer binary...
[2025-11-28 05:01:09] apptainer is not installed, using version from CVMFS
[2025-11-28 05:01:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 05:01:09] senture-c621e-l
[2025-11-28 05:01:09] apptainer works
[2025-11-28 05:01:09] Set ATHENA_PROC_NUMBER=8
[2025-11-28 05:01:09] Set ATHENA_CORE_NUMBER=8
[2025-11-28 05:01:09] Starting ATLAS job with PandaID=6892526603
[2025-11-28 05:01:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:04:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:04:12] 2025-11-28 13:03:21,256 | INFO     | time since job start (28923s) is within the limit (172800.0s)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,209 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 13:04:12] 2025-11-28 13:03:22,211 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-28 13:04:12] 2025-11-28 13:03:22,217 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6892526603/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,218 | INFO     | extracted standard info from prmon json
[2025-11-28 13:04:12] 2025-11-28 13:03:22,218 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 13:04:12] 2025-11-28 13:03:22,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 13:04:12] 2025-11-28 13:03:22,222 | INFO     | fitting pss+swap vs Time
[2025-11-28 13:04:12] 2025-11-28 13:03:22,222 | INFO     | sum of square deviations: 33022598105.890415
[2025-11-28 13:04:12] 2025-11-28 13:03:22,225 | INFO     | sum of deviations: 405216038969.0176
[2025-11-28 13:04:12] 2025-11-28 13:03:22,225 | INFO     | mean x: 1764320528.1308017
[2025-11-28 13:04:12] 2025-11-28 13:03:22,225 | INFO     | mean y: 2855891.4029535865
[2025-11-28 13:04:12] 2025-11-28 13:03:22,225 | INFO     | intersect: -21646893579.804237
[2025-11-28 13:04:12] 2025-11-28 13:03:22,225 | INFO     | chi2: 4.05962538182781
[2025-11-28 13:04:12] 2025-11-28 13:03:22,226 | INFO     | sum of square deviations: 31988651306.37959
[2025-11-28 13:04:12] 2025-11-28 13:03:22,228 | INFO     | sum of deviations: 519204555103.66986
[2025-11-28 13:04:12] 2025-11-28 13:03:22,228 | INFO     | mean x: 1764320375.6375268
[2025-11-28 13:04:12] 2025-11-28 13:03:22,228 | INFO     | mean y: 2872662.4392324095
[2025-11-28 13:04:12] 2025-11-28 13:03:22,228 | INFO     | intersect: -28633632419.303078
[2025-11-28 13:04:12] 2025-11-28 13:03:22,228 | INFO     | chi2: 2.0316675886303583
[2025-11-28 13:04:12] 2025-11-28 13:03:22,229 | INFO     | current chi2=2.0316675886303583 (change=49.95430864816354 %)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,229 | INFO     | sum of square deviations: 30976518869.325455
[2025-11-28 13:04:12] 2025-11-28 13:03:22,231 | INFO     | sum of deviations: 508667969382.6423
[2025-11-28 13:04:12] 2025-11-28 13:03:22,231 | INFO     | mean x: 1764320223.1443965
[2025-11-28 13:04:12] 2025-11-28 13:03:22,231 | INFO     | mean y: 2871074.900862069
[2025-11-28 13:04:12] 2025-11-28 13:03:22,231 | INFO     | intersect: -28969176721.47999
[2025-11-28 13:04:12] 2025-11-28 13:03:22,232 | INFO     | chi2: 2.0294169296567315
[2025-11-28 13:04:12] 2025-11-28 13:03:22,232 | INFO     | current chi2=2.0294169296567315 (change=0.11077889838977725 %)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,232 | INFO     | right removable region: 463
[2025-11-28 13:04:12] 2025-11-28 13:03:22,232 | INFO     | sum of square deviations: 31988468916.379593
[2025-11-28 13:04:12] 2025-11-28 13:03:22,234 | INFO     | sum of deviations: 293948580822.1131
[2025-11-28 13:04:12] 2025-11-28 13:03:22,234 | INFO     | mean x: 1764320680.6375268
[2025-11-28 13:04:12] 2025-11-28 13:03:22,235 | INFO     | mean y: 2872242.959488273
[2025-11-28 13:04:12] 2025-11-28 13:03:22,235 | INFO     | intersect: -16209831201.654211
[2025-11-28 13:04:12] 2025-11-28 13:03:22,235 | INFO     | chi2: 2.168824963264376
[2025-11-28 13:04:12] 2025-11-28 13:03:22,235 | INFO     | current chi2=2.168824963264376 (change=46.57573644669937 %)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,235 | INFO     | sum of square deviations: 30976154089.32544
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | sum of deviations: 267147546782.92712
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | mean x: 1764320833.1443965
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | mean y: 2876278.702586207
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | intersect: -15213150247.810595
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | chi2: 2.134670247976402
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | current chi2=2.134670247976402 (change=1.5748027557081747 %)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | left removable region: 20
[2025-11-28 13:04:12] 2025-11-28 13:03:22,238 | INFO     | sum of square deviations: 26957852341.882637
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | sum of deviations: 325851837279.34125
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | mean x: 1764320802.670429
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | mean y: 2899144.995485327
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | intersect: -21323249830.422928
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | chi2: 0.05705708511280994
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | current memory leak: 12.09 B/s (using 443 data points, chi2=0.06)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,241 | INFO     | ..............................
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . Timing measurements:
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . get job = 0 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . initial setup = 1 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . payload setup = 4 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . stage-in = 0 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . payload execution = 28895 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . stage-out = 1 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | . log creation = 0 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,242 | INFO     | ..............................
[2025-11-28 13:04:12] 2025-11-28 13:03:22,287 | INFO     | 
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | job summary report
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | --------------------------------------------------
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | PanDA job id: 6892526603
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | task id: 47493029
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | errors: (none)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | pilot state: finished 
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | transexitcode: 0
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | exeerrorcode: 0
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | exeerrordiag: 
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | exitcode: 0
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | exitmsg: OK
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | cpuconsumptiontime: 226192 s
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | nevents: 1000
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | neventsw: 0
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | pid: 500232
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | pgrp: 500232
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | corecount: 8
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | event service: False
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | sizes: {0: 2284311, 4: 2284573, 11: 2284601, 28904: 2322391, 28906: 2331455, 28910: 2331645}
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | --------------------------------------------------
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | 
[2025-11-28 13:04:12] 2025-11-28 13:03:22,288 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-28 13:04:12] 2025-11-28 13:03:22,307 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,307 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,307 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,307 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,307 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | job 6892526603 has completed (purged errors)
[2025-11-28 13:04:12] 2025-11-28 13:03:22,308 | INFO     | overall cleanup function is called
[2025-11-28 13:04:12] 2025-11-28 13:03:23,321 | INFO     | --- collectZombieJob: --- 10, [500232]
[2025-11-28 13:04:12] 2025-11-28 13:03:23,321 | INFO     | zombie collector waiting for pid 500232
[2025-11-28 13:04:12] 2025-11-28 13:03:23,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 13:04:12] 2025-11-28 13:03:23,321 | INFO     | collected zombie processes
[2025-11-28 13:04:12] 2025-11-28 13:03:23,321 | INFO     | will attempt to kill all subprocesses of pid=500232
[2025-11-28 13:04:12] 2025-11-28 13:03:23,452 | INFO     | process IDs to be killed: [500232] (in reverse order)
[2025-11-28 13:04:12] 2025-11-28 13:03:23,516 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 13:04:12] 2025-11-28 13:03:23,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 13:04:12] 2025-11-28 13:03:23,523 | INFO     | did not find any defunct processes belonging to 500232
[2025-11-28 13:04:12] 2025-11-28 13:03:23,529 | INFO     | did not find any defunct processes belonging to 500232
[2025-11-28 13:04:12] 2025-11-28 13:03:23,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 13:04:12] 2025-11-28 13:03:23,531 | INFO     | ready for new job
[2025-11-28 13:04:12] 2025-11-28 13:03:23,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 13:04:12] 2025-11-28 13:03:23,534 | INFO     | ***************************************
[2025-11-28 13:04:12] 2025-11-28 13:03:23,534 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 13:04:12] 2025-11-28 13:03:23,534 | INFO     | ***************************************
[2025-11-28 13:04:12] 2025-11-28 13:03:23,534 | INFO     | 
[2025-11-28 13:04:12] 2025-11-28 13:03:23,537 | INFO     | pilot is running in a VM
[2025-11-28 13:04:12] 2025-11-28 13:03:23,538 | INFO     | architecture information:
[2025-11-28 13:04:12] 2025-11-28 13:03:23,538 | INFO     | executing command: cat /etc/os-release
[2025-11-28 13:04:12] 2025-11-28 13:03:23,552 | INFO     | cat /etc/os-release:
[2025-11-28 13:04:12] NAME="CentOS Linux"
[2025-11-28 13:04:12] VERSION="7 (Core)"
[2025-11-28 13:04:12] ID="centos"
[2025-11-28 13:04:12] ID_LIKE="rhel fedora"
[2025-11-28 13:04:12] VERSION_ID="7"
[2025-11-28 13:04:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:04:12] ANSI_COLOR="0;31"
[2025-11-28 13:04:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:04:12] HOME_URL="https://www.centos.org/"
[2025-11-28 13:04:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:04:12] 
[2025-11-28 13:04:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:04:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:04:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:04:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:04:12] 
[2025-11-28 13:04:12] 2025-11-28 13:03:23,552 | INFO     | ***************************************
[2025-11-28 13:04:12] 2025-11-28 13:03:24,055 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-28 13:04:12] 2025-11-28 13:03:24,073 | INFO     | sufficient remaining disk space (111386034176 B)
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | INFO     | update_server=False
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:04:12] 2025-11-28 13:03:24,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:04:12] 2025-11-28 13:03:24,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:04:12] 2025-11-28 13:03:24,406 | INFO     | aborting loop
[2025-11-28 13:04:12] 2025-11-28 13:03:24,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:04:12] 2025-11-28 13:03:25,025 | INFO     | all payload control threads have been joined
[2025-11-28 13:04:12] 2025-11-28 13:03:25,027 | INFO     | all data control threads have been joined
[2025-11-28 13:04:12] 2025-11-28 13:03:25,079 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,080 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,412 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,478 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,483 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,527 | INFO     | [job] validate thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,641 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:25,726 | INFO     | all job control threads have been joined
[2025-11-28 13:04:12] 2025-11-28 13:03:25,898 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,031 | INFO     | [payload] control thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,032 | INFO     | [data] control thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,080 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,104 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,308 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:26,732 | INFO     | [job] control thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:28,519 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:34,270 | INFO     | job.realtimelogging is not enabled
[2025-11-28 13:04:12] 2025-11-28 13:03:35,275 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:04:12] 2025-11-28 13:03:54,515 | INFO     | PID=493333 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 13:04:12] 2025-11-28 13:03:54,515 | INFO     | .. there are 4 such processes running
[2025-11-28 13:04:12] 2025-11-28 13:03:54,515 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:04:12] 2025-11-28 13:03:54,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:04:12] 2025-11-28 13:03:54,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:04:12] 2025-11-28 13:04:05,491 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:04:12] 2025-11-28 13:04:07,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138488842291008)>', '<ExcThread(monitor, started 138488309597952)>']
[2025-11-28 13:04:12] 2025-11-28 13:04:07,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:04:12] 2025-11-28 13:04:07,581 | INFO     | [monitor] control thread has ended
[2025-11-28 13:04:12] 2025-11-28 13:04:12,294 | INFO     | all workflow threads have been joined
[2025-11-28 13:04:12] 2025-11-28 13:04:12,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:04:12] 2025-11-28 13:04:12,294 | INFO     | traces error code: 0
[2025-11-28 13:04:12] 2025-11-28 13:04:12,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:04:12] 2025-11-28 13:04:12,392 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:04:12] 2025-11-28 13:04:12,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:04:12] 2025-11-28 13:04:12,397 [wrapper] pilotpid: 493333
[2025-11-28 13:04:12] 2025-11-28 13:04:12,399 [wrapper] Pilot exit status: 0
[2025-11-28 13:04:12] 2025-11-28 13:04:12,407 [wrapper] pandaids: 6892526603
[2025-11-28 13:04:12] 2025-11-28 13:04:12,443 [wrapper] cleanup supervisor_pilot  947243 493334
[2025-11-28 13:04:12] 2025-11-28 13:04:12,445 [wrapper] Test setup, not cleaning
[2025-11-28 13:04:12] 2025-11-28 13:04:12,448 [wrapper] apfmon messages muted
[2025-11-28 13:04:12] 2025-11-28 13:04:12,450 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:04:12] 2025-11-28 13:04:12,452 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:04:12]  *** Error codes and diagnostics ***
[2025-11-28 13:04:12]     "exeErrorCode": 0,
[2025-11-28 13:04:12]     "exeErrorDiag": "",
[2025-11-28 13:04:12]     "pilotErrorCode": 0,
[2025-11-28 13:04:12]     "pilotErrorDiag": "",
[2025-11-28 13:04:12]  *** Listing of results directory ***
[2025-11-28 13:04:12] total 1320740
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc    576529 Nov 19 07:00 pilot3.tar.gz
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc      5112 Nov 19 07:10 queuedata.json
[2025-11-28 13:04:12] -rwx------ 1 boinc boinc     36292 Nov 19 07:10 runpilot2-wrapper.sh
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc       100 Nov 28 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:04:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 05:01 run_atlas
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc       105 Nov 28 05:01 job.xml
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc 410049399 Nov 28 05:01 EVNT.47493027._000112.pool.root.1
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc    590099 Nov 28 05:01 input.tar.gz
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc     15120 Nov 28 05:01 start_atlas.sh
[2025-11-28 13:04:12] drwxrwx--x 2 boinc boinc      4096 Nov 28 05:01 shared
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:01 boinc_setup_complete
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc      6662 Nov 28 05:01 init_data.xml
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:01 boinc_lockfile
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc      2773 Nov 28 05:01 pandaJob.out
[2025-11-28 13:04:12] -rw------- 1 boinc boinc    991858 Nov 28 05:01 agis_schedconf.cvmfs.json
[2025-11-28 13:04:12] drwx------ 5 boinc boinc      4096 Nov 28 05:01 pilot3
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc       533 Nov 28 12:57 boinc_task_state.xml
[2025-11-28 13:04:12] -rw------- 1 boinc boinc 926813311 Nov 28 13:02 HITS.47493029._001076.pool.root.1
[2025-11-28 13:04:12] -rw------- 1 boinc boinc      1044 Nov 28 13:03 memory_monitor_summary.json
[2025-11-28 13:04:12] -rw------- 1 boinc boinc   1516240 Nov 28 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:04:12] -rw------- 1 boinc boinc   1760956 Nov 28 13:03 log.47493029._001076.job.log.tgz.1
[2025-11-28 13:04:12] -rw------- 1 boinc boinc      8610 Nov 28 13:03 heartbeat.json
[2025-11-28 13:04:12] -rw------- 1 boinc boinc        95 Nov 28 13:03 pilot_heartbeat.json
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc      8192 Nov 28 13:04 boinc_mmap_file
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc        29 Nov 28 13:04 wrapper_checkpoint.txt
[2025-11-28 13:04:12] -rw------- 1 boinc boinc      4964 Nov 28 13:04 pilotlog.txt
[2025-11-28 13:04:12] -rw------- 1 boinc boinc   4069375 Nov 28 13:04 log.47493029._001076.job.log.1
[2025-11-28 13:04:12] -rw------- 1 boinc boinc       353 Nov 28 13:04 output.list
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc       620 Nov 28 13:04 runtime_log
[2025-11-28 13:04:12] -rw------- 1 boinc boinc   5847040 Nov 28 13:04 result.tar.gz
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc      8793 Nov 28 13:04 runtime_log.err
[2025-11-28 13:04:12] -rw------- 1 boinc boinc       657 Nov 28 13:04 p7IODmsVrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtiGKDm9vK8zn.diag
[2025-11-28 13:04:12] -rw-r--r-- 1 boinc boinc     20950 Nov 28 13:04 stderr.txt
[2025-11-28 13:04:12] HITS file was successfully produced:
[2025-11-28 13:04:12] -rw------- 1 boinc boinc 926813311 Nov 28 13:02 shared/HITS.pool.root.1
[2025-11-28 13:04:12]  *** Contents of shared directory: ***
[2025-11-28 13:04:12] total 1311848
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc 410049399 Nov 28 05:01 ATLAS.root_0
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc    590099 Nov 28 05:01 input.tar.gz
[2025-11-28 13:04:12] -rw-r--r-- 2 boinc boinc     15120 Nov 28 05:01 start_atlas.sh
[2025-11-28 13:04:12] -rw------- 1 boinc boinc 926813311 Nov 28 13:02 HITS.pool.root.1
[2025-11-28 13:04:12] -rw------- 1 boinc boinc   5847040 Nov 28 13:04 result.tar.gz
13:04:13 (489375): run_atlas exited; CPU time 226596.807976
13:04:13 (489375): called boinc_finish(0)

</stderr_txt>
]]>

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