Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:36:04 (4932): wrapper (7.7.26015): starting
23:36:04 (4932): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 23:36:04] Arguments: --nthreads 8
[2025-11-27 23:36:04] Threads: 8
[2025-11-27 23:36:04] Checking for CVMFS
[2025-11-27 23:36:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:36:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:36:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:36:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:36:05] 2.11.2.0 2880 155805 86912 153397 1 81 14122220 20275200 1 130560 0 60707966 99.975 5532850 22304 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 23:36:05] CVMFS is ok
[2025-11-27 23:36:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 23:36:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 23:36:05] Further information can be found at the LHC@home message board.
[2025-11-27 23:36:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:36:05] Checking for apptainer binary...
[2025-11-27 23:36:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:36:05] Running /usr/bin/apptainer --version
[2025-11-27 23:36:05] apptainer version 1.3.2-1.el7
[2025-11-27 23:36:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:36:06] c-115-10.aglt2.org
[2025-11-27 23:36:06] apptainer works
[2025-11-27 23:36:06] Set ATHENA_PROC_NUMBER=8
[2025-11-27 23:36:06] Set ATHENA_CORE_NUMBER=8
[2025-11-27 23:36:06] Starting ATLAS job with PandaID=6898271372
[2025-11-27 23:36:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 10:46:49]  *** The last 200 lines of the pilot log: ***
[2025-11-28 10:46:49] 2025-11-28 15:46:15,926 | INFO     | time since job start (40191s) is within the limit (172800.0s)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,167 | INFO     | monitor loop #2956: job 0:6898271372 is in state 'finished'
[2025-11-28 10:46:49] 2025-11-28 15:46:17,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,574 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 10:46:49] 2025-11-28 15:46:17,576 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1845.625
[2025-11-28 10:46:49] 2025-11-28 15:46:17,577 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898271372/memory_monitor_output.txt (trf name=prmon)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,589 | INFO     | extracted standard info from memory monitor json
[2025-11-28 10:46:49] 2025-11-28 15:46:17,590 | WARNING  | standard memory fields were not found in memory monitor json (or json doesn't exist yet): 'totRCHAR'
[2025-11-28 10:46:49] 2025-11-28 15:46:17,598 | INFO     | fitting pss+swap vs Time
[2025-11-28 10:46:49] 2025-11-28 15:46:17,599 | INFO     | sum of square deviations: 69349595597.79247
[2025-11-28 10:46:49] 2025-11-28 15:46:17,606 | INFO     | sum of deviations: 823378708366.4698
[2025-11-28 10:46:49] 2025-11-28 15:46:17,606 | INFO     | mean x: 1764323098.6144974
[2025-11-28 10:46:49] 2025-11-28 15:46:17,606 | INFO     | mean y: 3265511.014827018
[2025-11-28 10:46:49] 2025-11-28 15:46:17,607 | INFO     | intersect: -20944312647.964016
[2025-11-28 10:46:49] 2025-11-28 15:46:17,607 | INFO     | chi2: 2.539610588809082
[2025-11-28 10:46:49] 2025-11-28 15:46:17,608 | INFO     | sum of square deviations: 67649929081.09145
[2025-11-28 10:46:49] 2025-11-28 15:46:17,615 | INFO     | sum of deviations: 810269763448.8485
[2025-11-28 10:46:49] 2025-11-28 15:46:17,615 | INFO     | mean x: 1764322946.1146178
[2025-11-28 10:46:49] 2025-11-28 15:46:17,615 | INFO     | mean y: 3264334.7558139535
[2025-11-28 10:46:49] 2025-11-28 15:46:17,615 | INFO     | intersect: -21128724354.870796
[2025-11-28 10:46:49] 2025-11-28 15:46:17,616 | INFO     | chi2: 2.5385431488021597
[2025-11-28 10:46:49] 2025-11-28 15:46:17,616 | INFO     | current chi2=2.5385431488021597 (change=0.0420316410565505 %)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,616 | INFO     | right removable region: 601
[2025-11-28 10:46:49] 2025-11-28 15:46:17,617 | INFO     | sum of square deviations: 67649812753.38859
[2025-11-28 10:46:49] 2025-11-28 15:46:17,624 | INFO     | sum of deviations: 629438222448.525
[2025-11-28 10:46:49] 2025-11-28 15:46:17,624 | INFO     | mean x: 1764323251.1196012
[2025-11-28 10:46:49] 2025-11-28 15:46:17,624 | INFO     | mean y: 3282875.353820598
[2025-11-28 10:46:49] 2025-11-28 15:46:17,624 | INFO     | intersect: -16412616087.407133
[2025-11-28 10:46:49] 2025-11-28 15:46:17,625 | INFO     | chi2: 0.09447470722509278
[2025-11-28 10:46:49] 2025-11-28 15:46:17,625 | INFO     | current chi2=0.09447470722509278 (change=96.27995301163887 %)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,626 | INFO     | sum of square deviations: 65978030433.95307
[2025-11-28 10:46:49] 2025-11-28 15:46:17,633 | INFO     | sum of deviations: 590590611817.4004
[2025-11-28 10:46:49] 2025-11-28 15:46:17,633 | INFO     | mean x: 1764323403.6247907
[2025-11-28 10:46:49] 2025-11-28 15:46:17,633 | INFO     | mean y: 3286416.202680067
[2025-11-28 10:46:49] 2025-11-28 15:46:17,633 | INFO     | intersect: -15789740922.399132
[2025-11-28 10:46:49] 2025-11-28 15:46:17,634 | INFO     | chi2: 0.05766391394181935
[2025-11-28 10:46:49] 2025-11-28 15:46:17,634 | INFO     | current chi2=0.05766391394181935 (change=38.963648964340344 %)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,634 | INFO     | sum of square deviations: 64334089277.498276
[2025-11-28 10:46:49] 2025-11-28 15:46:17,641 | INFO     | sum of deviations: 568779062410.9438
[2025-11-28 10:46:49] 2025-11-28 15:46:17,641 | INFO     | mean x: 1764323556.1266892
[2025-11-28 10:46:49] 2025-11-28 15:46:17,641 | INFO     | mean y: 3288438.680743243
[2025-11-28 10:46:49] 2025-11-28 15:46:17,642 | INFO     | intersect: -15595133942.255514
[2025-11-28 10:46:49] 2025-11-28 15:46:17,642 | INFO     | chi2: 0.054281729541467434
[2025-11-28 10:46:49] 2025-11-28 15:46:17,642 | INFO     | current chi2=0.054281729541467434 (change=5.865339636439537 %)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,642 | INFO     | left removable region: 30
[2025-11-28 10:46:49] 2025-11-28 15:46:17,643 | INFO     | sum of square deviations: 57727695027.7966
[2025-11-28 10:46:49] 2025-11-28 15:46:17,649 | INFO     | sum of deviations: 512296275686.035
[2025-11-28 10:46:49] 2025-11-28 15:46:17,649 | INFO     | mean x: 1764323830.6252189
[2025-11-28 10:46:49] 2025-11-28 15:46:17,650 | INFO     | mean y: 3291491.7197898426
[2025-11-28 10:46:49] 2025-11-28 15:46:17,650 | INFO     | intersect: -15653951138.497826
[2025-11-28 10:46:49] 2025-11-28 15:46:17,650 | INFO     | chi2: 0.05257211942626076
[2025-11-28 10:46:49] 2025-11-28 15:46:17,650 | INFO     | current memory leak: 8.87 B/s (using 571 data points, chi2=0.05)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,651 | INFO     | could have reported an average CPU frequency of 2412 MHz (25 samples)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,651 | INFO     | ..............................
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . Timing measurements:
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . get job = 0 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . initial setup = 2 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . payload setup = 8 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . stage-in = 0 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . payload execution = 40093 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . stage-out = 3 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | . log creation = 0 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,652 | INFO     | ..............................
[2025-11-28 10:46:49] 2025-11-28 15:46:17,734 | INFO     | 
[2025-11-28 10:46:49] 2025-11-28 15:46:17,734 | INFO     | job summary report
[2025-11-28 10:46:49] 2025-11-28 15:46:17,735 | INFO     | --------------------------------------------------
[2025-11-28 10:46:49] 2025-11-28 15:46:17,735 | INFO     | PanDA job id: 6898271372
[2025-11-28 10:46:49] 2025-11-28 15:46:17,735 | INFO     | task id: 47556161
[2025-11-28 10:46:49] 2025-11-28 15:46:17,735 | INFO     | errors: (none)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 10:46:49] 2025-11-28 15:46:17,736 | INFO     | pilot state: finished 
[2025-11-28 10:46:49] 2025-11-28 15:46:17,736 | INFO     | transexitcode: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:17,736 | INFO     | exeerrorcode: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:17,736 | INFO     | exeerrordiag: 
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | exitcode: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | exitmsg: OK
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | cpuconsumptiontime: 312022 s
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | nevents: 1000
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | neventsw: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:17,737 | INFO     | pid: 15121
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | pgrp: 15121
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | corecount: 8
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | event service: False
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | sizes: {0: 2283487, 1: 2284343, 7: 2284605, 12: 2284633, 40166: 2328167, 40169: 2337161, 40170: 2337345, 40177: 2337655}
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | --------------------------------------------------
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | 
[2025-11-28 10:46:49] 2025-11-28 15:46:17,738 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 10:46:49] 2025-11-28 15:46:17,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,772 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 10:46:49] 2025-11-28 15:46:17,774 | INFO     | job 6898271372 has completed (purged errors)
[2025-11-28 10:46:49] 2025-11-28 15:46:17,774 | INFO     | overall cleanup function is called
[2025-11-28 10:46:49] 2025-11-28 15:46:18,794 | INFO     | --- collectZombieJob: --- 10, [15121]
[2025-11-28 10:46:49] 2025-11-28 15:46:18,794 | INFO     | zombie collector waiting for pid 15121
[2025-11-28 10:46:49] 2025-11-28 15:46:18,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 10:46:49] 2025-11-28 15:46:18,794 | INFO     | collected zombie processes
[2025-11-28 10:46:49] 2025-11-28 15:46:18,795 | INFO     | will attempt to kill all subprocesses of pid=15121
[2025-11-28 10:46:49] 2025-11-28 15:46:18,885 | INFO     | process IDs to be killed: [15121] (in reverse order)
[2025-11-28 10:46:49] 2025-11-28 15:46:18,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 10:46:49] 2025-11-28 15:46:18,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 10:46:49] 2025-11-28 15:46:18,947 | INFO     | did not find any defunct processes belonging to 15121
[2025-11-28 10:46:49] 2025-11-28 15:46:18,950 | INFO     | did not find any defunct processes belonging to 15121
[2025-11-28 10:46:49] 2025-11-28 15:46:18,953 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 10:46:49] 2025-11-28 15:46:18,953 | INFO     | ready for new job
[2025-11-28 10:46:49] 2025-11-28 15:46:18,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 10:46:49] 2025-11-28 15:46:18,956 | INFO     | ***************************************
[2025-11-28 10:46:49] 2025-11-28 15:46:18,957 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 10:46:49] 2025-11-28 15:46:18,957 | INFO     | ***************************************
[2025-11-28 10:46:49] 2025-11-28 15:46:18,957 | INFO     | 
[2025-11-28 10:46:49] 2025-11-28 15:46:18,957 | INFO     | architecture information:
[2025-11-28 10:46:49] 2025-11-28 15:46:18,958 | INFO     | executing command: cat /etc/os-release
[2025-11-28 10:46:49] 2025-11-28 15:46:18,977 | INFO     | cat /etc/os-release:
[2025-11-28 10:46:49] NAME="CentOS Linux"
[2025-11-28 10:46:49] VERSION="7 (Core)"
[2025-11-28 10:46:49] ID="centos"
[2025-11-28 10:46:49] ID_LIKE="rhel fedora"
[2025-11-28 10:46:49] VERSION_ID="7"
[2025-11-28 10:46:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 10:46:49] ANSI_COLOR="0;31"
[2025-11-28 10:46:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 10:46:49] HOME_URL="https://www.centos.org/"
[2025-11-28 10:46:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 10:46:49] 
[2025-11-28 10:46:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 10:46:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 10:46:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 10:46:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 10:46:49] 
[2025-11-28 10:46:49] 2025-11-28 15:46:18,978 | INFO     | ***************************************
[2025-11-28 10:46:49] 2025-11-28 15:46:19,481 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 10:46:49] 2025-11-28 15:46:19,505 | INFO     | sufficient remaining disk space (17468227584 B)
[2025-11-28 10:46:49] 2025-11-28 15:46:19,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 10:46:49] 2025-11-28 15:46:19,506 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 10:46:49] 2025-11-28 15:46:19,507 | INFO     | update_server=False
[2025-11-28 10:46:49] 2025-11-28 15:46:19,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 10:46:49] 2025-11-28 15:46:19,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:46:49] 2025-11-28 15:46:19,671 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 10:46:49] 2025-11-28 15:46:19,671 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 10:46:49] 2025-11-28 15:46:19,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:46:49] 2025-11-28 15:46:19,671 | INFO     | will abort loop
[2025-11-28 10:46:49] 2025-11-28 15:46:19,841 | INFO     | all payload control threads have been joined
[2025-11-28 10:46:49] 2025-11-28 15:46:20,423 | INFO     | all job control threads have been joined
[2025-11-28 10:46:49] 2025-11-28 15:46:20,510 | INFO     | [job] retrieve thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,513 | INFO     | [job] queue monitor thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,518 | INFO     | all data control threads have been joined
[2025-11-28 10:46:49] 2025-11-28 15:46:20,553 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,577 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,583 | INFO     | [payload] validate_post thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,677 | INFO     | [job] job monitor thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 10:46:49] 2025-11-28 15:46:20,847 | INFO     | [payload] control thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:20,964 | INFO     | [payload] failed_post thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:21,114 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:21,429 | INFO     | [job] control thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:21,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 10:46:49] 2025-11-28 15:46:21,523 | INFO     | [data] control thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:21,796 | INFO     | [job] validate thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:21,853 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:22,003 | INFO     | [data] copytool_in thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:22,795 | INFO     | [data] copytool_out thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:25,494 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 10:46:49] 2025-11-28 15:46:30,045 | INFO     | [monitor] cgroup control has ended
[2025-11-28 10:46:49] 2025-11-28 15:46:30,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765411641152)>', '<ExcThread(monitor, started 139764963448576)>']
[2025-11-28 10:46:49] 2025-11-28 15:46:35,925 | INFO     | all workflow threads have been joined
[2025-11-28 10:46:49] 2025-11-28 15:46:35,925 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 10:46:49] 2025-11-28 15:46:35,926 | INFO     | traces error code: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:35,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 10:46:49] 2025-11-28 15:46:49,122 | INFO     | PID=8659 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 10:46:49] 2025-11-28 15:46:49,123 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 10:46:49] 2025-11-28 15:46:49,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 10:46:49] 2025-11-28 15:46:49,124 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 10:46:49] 2025-11-28 15:46:49,124 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 10:46:49] 2025-11-28 15:46:49,124 | INFO     | [monitor] control thread has ended
[2025-11-28 10:46:49] 2025-11-28 15:46:49,226 [wrapper] ==== pilot stdout END ====
[2025-11-28 10:46:49] 2025-11-28 15:46:49,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 10:46:49] 2025-11-28 15:46:49,236 [wrapper] pilotpid: 8659
[2025-11-28 10:46:49] 2025-11-28 15:46:49,241 [wrapper] Pilot exit status: 0
[2025-11-28 10:46:49] 2025-11-28 15:46:49,258 [wrapper] pandaids: 6898271372
[2025-11-28 10:46:49] 2025-11-28 15:46:49,303 [wrapper] cleanup supervisor_pilot  6621 8660
[2025-11-28 10:46:49] 2025-11-28 15:46:49,308 [wrapper] Test setup, not cleaning
[2025-11-28 10:46:49] 2025-11-28 15:46:49,313 [wrapper] apfmon messages muted
[2025-11-28 10:46:49] 2025-11-28 15:46:49,317 [wrapper] ==== wrapper stdout END ====
[2025-11-28 10:46:49] 2025-11-28 15:46:49,322 [wrapper] ==== wrapper stderr END ====
[2025-11-28 10:46:49]  *** Error codes and diagnostics ***
[2025-11-28 10:46:49]     "exeErrorCode": 0,
[2025-11-28 10:46:49]     "exeErrorDiag": "",
[2025-11-28 10:46:49]     "pilotErrorCode": 0,
[2025-11-28 10:46:49]     "pilotErrorDiag": "",
[2025-11-28 10:46:49]  *** Listing of results directory ***
[2025-11-28 10:46:49] total 1317628
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:05 queuedata.json
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-28 10:46:49] -rwx------ 1 boincer umatlas     36292 Nov 26 10:06 runpilot2-wrapper.sh
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas       100 Nov 27 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 10:46:49] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 23:36 run_atlas
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas       105 Nov 27 23:36 job.xml
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas 409282572 Nov 27 23:36 EVNT.47483658._002531.pool.root.1
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 23:36 start_atlas.sh
[2025-11-28 10:46:49] drwxrwx--x 2 boincer umatlas      4096 Nov 27 23:36 shared
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 23:36 input.tar.gz
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas         0 Nov 27 23:36 boinc_lockfile
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 23:36 pandaJob.out
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas        57 Nov 27 23:36 setup.sh.local
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas    991858 Nov 27 23:36 agis_schedconf.cvmfs.json
[2025-11-28 10:46:49] drwx------ 5 boincer umatlas      4096 Nov 27 23:36 pilot3
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas       533 Nov 28 10:33 boinc_task_state.xml
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas 921158615 Nov 28 10:44 HITS.47556161._005133.pool.root.1
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas      5913 Nov 28 10:46 init_data.xml
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas   1516240 Nov 28 10:46 agis_ddmendpoints.agis.ALL.json
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas   1922795 Nov 28 10:46 log.47556161._005133.job.log.tgz.1
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas      8412 Nov 28 10:46 heartbeat.json
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 10:46 boinc_mmap_file
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas        29 Nov 28 10:46 wrapper_checkpoint.txt
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas        95 Nov 28 10:46 pilot_heartbeat.json
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas       744 Nov 28 10:46 pilotlog.txt
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas   5523551 Nov 28 10:46 log.47556161._005133.job.log.1
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas       353 Nov 28 10:46 output.list
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas       620 Nov 28 10:46 runtime_log
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas   7464960 Nov 28 10:46 result.tar.gz
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas      9343 Nov 28 10:46 runtime_log.err
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas       667 Nov 28 10:46 E9QKDmzGWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXyJKDmX6FMnm.diag
[2025-11-28 10:46:49] -rw-r--r-- 1 boincer umatlas     21390 Nov 28 10:46 stderr.txt
[2025-11-28 10:46:49] HITS file was successfully produced:
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas 921158615 Nov 28 10:44 shared/HITS.pool.root.1
[2025-11-28 10:46:49]  *** Contents of shared directory: ***
[2025-11-28 10:46:49] total 1307160
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas 409282572 Nov 27 23:36 ATLAS.root_0
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 23:36 start_atlas.sh
[2025-11-28 10:46:49] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 23:36 input.tar.gz
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas 921158615 Nov 28 10:44 HITS.pool.root.1
[2025-11-28 10:46:49] -rw------- 1 boincer umatlas   7464960 Nov 28 10:46 result.tar.gz
10:46:51 (4932): run_atlas exited; CPU time 310115.957912
10:46:51 (4932): called boinc_finish(0)

</stderr_txt>
]]>

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