Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:28 (1919974): wrapper (7.7.26015): starting
00:11:28 (1919974): wrapper: running run_atlas (--nthreads 9)
[2025-11-28 00:11:28] Arguments: --nthreads 9
[2025-11-28 00:11:28] Threads: 9
[2025-11-28 00:11:28] Checking for CVMFS
[2025-11-28 00:11:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:11:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:11:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:11:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:11:31] 2.13.2.0 8302 36174 271500 153398 1 134 33881921 39288833 10802 16776704 0 28029192 99.607 34474701 34319 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:11:31] CVMFS is ok
[2025-11-28 00:11:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:11:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:11:31] Further information can be found at the LHC@home message board.
[2025-11-28 00:11:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:11:31] Checking for apptainer binary...
[2025-11-28 00:11:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:11:31] Running /usr/bin/apptainer --version
[2025-11-28 00:11:31] apptainer version 1.4.4-1.el9
[2025-11-28 00:11:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:11:32] c-211-22.aglt2.org
[2025-11-28 00:11:32] apptainer works
[2025-11-28 00:11:32] Set ATHENA_PROC_NUMBER=9
[2025-11-28 00:11:32] Set ATHENA_CORE_NUMBER=9
[2025-11-28 00:11:32] Starting ATLAS job with PandaID=6898723203
[2025-11-28 00:11:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:21:40]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:21:40] 2025-11-29 21:20:42,783 | INFO     | monitor loop #8132: job 0:6898723203 is in state 'finished'
[2025-11-29 16:21:40] 2025-11-29 21:20:42,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:21:40] 2025-11-29 21:20:43,103 | INFO     | time since job start (144465s) is within the limit (172800.0s)
[2025-11-29 16:21:40] 2025-11-29 21:20:45,111 | INFO     | time since job start (144467s) is within the limit (172800.0s)
[2025-11-29 16:21:40] 2025-11-29 21:20:45,289 | INFO     | monitor loop #8133: job 0:6898723203 is in state 'finished'
[2025-11-29 16:21:40] 2025-11-29 21:20:45,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:21:40] 2025-11-29 21:20:46,557 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 16:21:40] 2025-11-29 21:20:46,650 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9978250000004
[2025-11-29 16:21:40] 2025-11-29 21:20:46,687 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898723203/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:21:40] 2025-11-29 21:20:46,688 | INFO     | extracted standard info from prmon json
[2025-11-29 16:21:40] 2025-11-29 21:20:46,688 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:21:40] 2025-11-29 21:20:46,688 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:21:40] 2025-11-29 21:20:47,153 | INFO     | time since job start (144469s) is within the limit (172800.0s)
[2025-11-29 16:21:40] 2025-11-29 21:20:47,162 | INFO     | fitting pss+swap vs Time
[2025-11-29 16:21:40] 2025-11-29 21:20:47,195 | INFO     | sum of square deviations: 4096704379245.7856
[2025-11-29 16:21:40] 2025-11-29 21:20:47,942 | INFO     | monitor loop #8134: job 0:6898723203 is in state 'finished'
[2025-11-29 16:21:40] 2025-11-29 21:20:47,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:21:40] 2025-11-29 21:20:49,114 | INFO     | sum of deviations: 1164151478357.9246
[2025-11-29 16:21:40] 2025-11-29 21:20:49,115 | INFO     | mean x: 1764379030.8832488
[2025-11-29 16:21:40] 2025-11-29 21:20:49,115 | INFO     | mean y: 3058509.336717428
[2025-11-29 16:21:40] 2025-11-29 21:20:49,115 | INFO     | intersect: -498321201.5333659
[2025-11-29 16:21:40] 2025-11-29 21:20:49,150 | INFO     | chi2: 59.90414354868813
[2025-11-29 16:21:40] 2025-11-29 21:20:49,194 | INFO     | sum of square deviations: 4070768988104.5073
[2025-11-29 16:21:40] 2025-11-29 21:20:49,445 | INFO     | time since job start (144471s) is within the limit (172800.0s)
[2025-11-29 16:21:40] 2025-11-29 21:20:50,613 | INFO     | monitor loop #8135: job 0:6898723203 is in state 'finished'
[2025-11-29 16:21:40] 2025-11-29 21:20:50,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:21:40] 2025-11-29 21:20:50,701 | INFO     | sum of deviations: 2182958529311.03
[2025-11-29 16:21:40] 2025-11-29 21:20:50,701 | INFO     | mean x: 1764378878.3925393
[2025-11-29 16:21:40] 2025-11-29 21:20:50,701 | INFO     | mean y: 3064499.501059771
[2025-11-29 16:21:40] 2025-11-29 21:20:50,701 | INFO     | intersect: -943087427.2671174
[2025-11-29 16:21:40] 2025-11-29 21:20:50,705 | INFO     | chi2: 55.00524732828227
[2025-11-29 16:21:40] 2025-11-29 21:20:50,705 | INFO     | current chi2=55.00524732828227 (change=8.177892095935228 %)
[2025-11-29 16:21:40] 2025-11-29 21:20:50,705 | INFO     | right removable region: 2358
[2025-11-29 16:21:40] 2025-11-29 21:20:50,709 | INFO     | sum of square deviations: 4070762667284.504
[2025-11-29 16:21:40] 2025-11-29 21:20:51,755 | INFO     | time since job start (144473s) is within the limit (172800.0s)
[2025-11-29 16:21:40] 2025-11-29 21:20:52,548 | INFO     | sum of deviations: 131268160027.87646
[2025-11-29 16:21:40] 2025-11-29 21:20:52,548 | INFO     | mean x: 1764379183.3925393
[2025-11-29 16:21:40] 2025-11-29 21:20:52,548 | INFO     | mean y: 3064581.1988130566
[2025-11-29 16:21:40] 2025-11-29 21:20:52,549 | INFO     | intersect: -53830607.22786191
[2025-11-29 16:21:40] 2025-11-29 21:20:52,552 | INFO     | chi2: 55.71686438478019
[2025-11-29 16:21:40] 2025-11-29 21:20:52,552 | INFO     | current chi2=55.71686438478019 (change=6.989965828498426 %)
[2025-11-29 16:21:40] 2025-11-29 21:20:52,553 | INFO     | left removable region: 10
[2025-11-29 16:21:40] 2025-11-29 21:20:52,601 | INFO     | sum of square deviations: 4014084383420.278
[2025-11-29 16:21:40] 2025-11-29 21:20:53,284 | INFO     | monitor loop #8136: job 0:6898723203 is in state 'finished'
[2025-11-29 16:21:40] 2025-11-29 21:20:53,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:21:40] 2025-11-29 21:20:55,329 | INFO     | sum of deviations: 412970816000.8152
[2025-11-29 16:21:40] 2025-11-29 21:20:55,329 | INFO     | mean x: 1764379152.9131176
[2025-11-29 16:21:40] 2025-11-29 21:20:55,329 | INFO     | mean y: 3076975.234241908
[2025-11-29 16:21:40] 2025-11-29 21:20:55,329 | INFO     | intersect: -178443149.63480932
[2025-11-29 16:21:40] 2025-11-29 21:20:55,437 | INFO     | chi2: 46.922427342125786
[2025-11-29 16:21:40] 2025-11-29 21:20:55,437 | INFO     | current memory leak: 0.10 B/s (using 2348 data points, chi2=46.92)
[2025-11-29 16:21:40] 2025-11-29 21:20:55,477 | INFO     | could have reported an average CPU frequency of 2899 MHz (81 samples)
[2025-11-29 16:21:40] 2025-11-29 21:20:55,477 | INFO     | ..............................
[2025-11-29 16:21:40] 2025-11-29 21:20:55,477 | INFO     | . Timing measurements:
[2025-11-29 16:21:40] 2025-11-29 21:20:55,477 | INFO     | . get job = 0 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . initial setup = 10 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . payload setup = 58 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . stage-in = 1 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . payload execution = 144208 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . stage-out = 30 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,478 | INFO     | . log creation = 9 s
[2025-11-29 16:21:40] 2025-11-29 21:20:55,479 | INFO     | ..............................
[2025-11-29 16:21:40] 2025-11-29 21:20:56,973 | INFO     | 
[2025-11-29 16:21:40] 2025-11-29 21:20:56,974 | INFO     | job summary report
[2025-11-29 16:21:40] 2025-11-29 21:20:56,974 | INFO     | --------------------------------------------------
[2025-11-29 16:21:40] 2025-11-29 21:20:56,974 | INFO     | PanDA job id: 6898723203
[2025-11-29 16:21:40] 2025-11-29 21:20:56,974 | INFO     | task id: 47556173
[2025-11-29 16:21:40] 2025-11-29 21:20:56,974 | INFO     | errors: (none)
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | pilot state: finished 
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | transexitcode: 0
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | exeerrorcode: 0
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | exeerrordiag: 
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | exitcode: 0
[2025-11-29 16:21:40] 2025-11-29 21:20:56,975 | INFO     | exitmsg: OK
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | cpuconsumptiontime: 510439 s
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | nevents: 1000
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | neventsw: 0
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | pid: 1943872
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | pgrp: 1943872
[2025-11-29 16:21:40] 2025-11-29 21:20:56,976 | INFO     | corecount: 9
[2025-11-29 16:21:40] 2025-11-29 21:20:56,977 | INFO     | event service: False
[2025-11-29 16:21:40] 2025-11-29 21:20:56,977 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284172, 3: 2284371, 4: 2284371, 14: 2284399, 25: 2284555, 36: 2284583, 46: 2284873, 48: 2284901, 144274: 2375180, 144277: 23754
[2025-11-29 16:21:40] 2025-11-29 21:20:56,981 | INFO     | --------------------------------------------------
[2025-11-29 16:21:40] 2025-11-29 21:20:56,981 | INFO     | 
[2025-11-29 16:21:40] 2025-11-29 21:20:56,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-29 16:21:40] 2025-11-29 21:20:57,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:21:40] 2025-11-29 21:20:57,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:21:40] 2025-11-29 21:20:57,519 | INFO     | job 6898723203 has completed (purged errors)
[2025-11-29 16:21:40] 2025-11-29 21:20:57,523 | INFO     | overall cleanup function is called
[2025-11-29 16:21:40] 2025-11-29 21:20:57,685 | INFO     | PID=1933903 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 16:21:40] 2025-11-29 21:20:57,686 | INFO     | .. there are 15 such processes running
[2025-11-29 16:21:40] 2025-11-29 21:20:58,637 | INFO     | --- collectZombieJob: --- 10, [1943872]
[2025-11-29 16:21:40] 2025-11-29 21:20:58,686 | INFO     | zombie collector waiting for pid 1943872
[2025-11-29 16:21:40] 2025-11-29 21:20:58,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:21:40] 2025-11-29 21:20:58,687 | INFO     | collected zombie processes
[2025-11-29 16:21:40] 2025-11-29 21:20:58,687 | INFO     | will attempt to kill all subprocesses of pid=1943872
[2025-11-29 16:21:40] 2025-11-29 21:21:01,518 | INFO     | process IDs to be killed: [1943872] (in reverse order)
[2025-11-29 16:21:40] 2025-11-29 21:21:02,575 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:21:40] 2025-11-29 21:21:02,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:21:40] 2025-11-29 21:21:02,717 | INFO     | did not find any defunct processes belonging to 1943872
[2025-11-29 16:21:40] 2025-11-29 21:21:02,859 | INFO     | did not find any defunct processes belonging to 1943872
[2025-11-29 16:21:40] 2025-11-29 21:21:02,928 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:21:40] 2025-11-29 21:21:02,928 | INFO     | ready for new job
[2025-11-29 16:21:40] 2025-11-29 21:21:02,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:21:40] 2025-11-29 21:21:03,018 | INFO     | ***************************************
[2025-11-29 16:21:40] 2025-11-29 21:21:03,064 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:21:40] 2025-11-29 21:21:03,064 | INFO     | ***************************************
[2025-11-29 16:21:40] 2025-11-29 21:21:03,064 | INFO     | 
[2025-11-29 16:21:40] 2025-11-29 21:21:03,067 | INFO     | architecture information:
[2025-11-29 16:21:40] 2025-11-29 21:21:03,101 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:21:40] 2025-11-29 21:21:03,332 | INFO     | cat /etc/os-release:
[2025-11-29 16:21:40] NAME="CentOS Linux"
[2025-11-29 16:21:40] VERSION="7 (Core)"
[2025-11-29 16:21:40] ID="centos"
[2025-11-29 16:21:40] ID_LIKE="rhel fedora"
[2025-11-29 16:21:40] VERSION_ID="7"
[2025-11-29 16:21:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:21:40] ANSI_COLOR="0;31"
[2025-11-29 16:21:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:21:40] HOME_URL="https://www.centos.org/"
[2025-11-29 16:21:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:21:40] 
[2025-11-29 16:21:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:21:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:21:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:21:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:21:40] 
[2025-11-29 16:21:40] 2025-11-29 21:21:03,334 | INFO     | ***************************************
[2025-11-29 16:21:40] 2025-11-29 21:21:03,860 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-29 16:21:40] 2025-11-29 21:21:04,041 | INFO     | sufficient remaining disk space (50361008128 B)
[2025-11-29 16:21:40] 2025-11-29 21:21:04,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:21:40] 2025-11-29 21:21:04,042 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:21:40] 2025-11-29 21:21:04,042 | INFO     | update_server=False
[2025-11-29 16:21:40] 2025-11-29 21:21:04,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:21:40] 2025-11-29 21:21:04,072 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:21:40] 2025-11-29 21:21:04,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:21:40] 2025-11-29 21:21:04,307 | INFO     | all payload control threads have been joined
[2025-11-29 16:21:40] 2025-11-29 21:21:04,487 | INFO     | all data control threads have been joined
[2025-11-29 16:21:40] 2025-11-29 21:21:04,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:21:40] 2025-11-29 21:21:04,768 | INFO     | aborting loop
[2025-11-29 16:21:40] 2025-11-29 21:21:05,048 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,087 | INFO     | all job control threads have been joined
[2025-11-29 16:21:40] 2025-11-29 21:21:05,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,321 | INFO     | [payload] control thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,494 | INFO     | [data] control thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,625 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,644 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,828 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,846 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,847 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,854 | INFO     | [job] validate thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:05,990 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:06,079 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:06,095 | INFO     | [job] control thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:06,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:21:40] 2025-11-29 21:21:07,176 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:08,360 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:21:40] 2025-11-29 21:21:30,807 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:21:40] 2025-11-29 21:21:32,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908874008384)>', '<ExcThread(monitor, started 139908073117440)>']
[2025-11-29 16:21:40] 2025-11-29 21:21:35,847 | INFO     | PID=1933903 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 16:21:40] 2025-11-29 21:21:35,896 | INFO     | .. there are 15 such processes running
[2025-11-29 16:21:40] 2025-11-29 21:21:35,897 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:21:40] 2025-11-29 21:21:35,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:21:40] 2025-11-29 21:21:35,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:21:40] 2025-11-29 21:21:35,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:21:40] 2025-11-29 21:21:35,898 | INFO     | [monitor] control thread has ended
[2025-11-29 16:21:40] 2025-11-29 21:21:37,377 | INFO     | all workflow threads have been joined
[2025-11-29 16:21:40] 2025-11-29 21:21:37,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:21:40] 2025-11-29 21:21:37,378 | INFO     | traces error code: 0
[2025-11-29 16:21:40] 2025-11-29 21:21:37,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:21:40] 2025-11-29 21:21:38,502 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:21:40] 2025-11-29 21:21:38,524 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:21:40] 2025-11-29 21:21:38,562 [wrapper] pilotpid: 1933903
[2025-11-29 16:21:40] 2025-11-29 21:21:38,612 [wrapper] Pilot exit status: 0
[2025-11-29 16:21:40] 2025-11-29 21:21:38,780 [wrapper] pandaids: 6898723203
[2025-11-29 16:21:40] 2025-11-29 21:21:38,907 [wrapper] cleanup supervisor_pilot 3614584 1933904
[2025-11-29 16:21:40] 2025-11-29 21:21:38,911 [wrapper] Test setup, not cleaning
[2025-11-29 16:21:40] 2025-11-29 21:21:38,914 [wrapper] apfmon messages muted
[2025-11-29 16:21:40] 2025-11-29 21:21:38,918 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:21:40] 2025-11-29 21:21:38,922 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:21:40]  *** Error codes and diagnostics ***
[2025-11-29 16:21:40]     "exeErrorCode": 0,
[2025-11-29 16:21:40]     "exeErrorDiag": "",
[2025-11-29 16:21:40]     "pilotErrorCode": 0,
[2025-11-29 16:21:40]     "pilotErrorDiag": "",
[2025-11-29 16:21:40]  *** Listing of results directory ***
[2025-11-29 16:21:40] total 1347432
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 17:16 pilot3.tar.gz
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 17:54 queuedata.json
[2025-11-29 16:21:40] -rwx------. 1 boincer umatlas     36292 Nov 26 17:55 runpilot2-wrapper.sh
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:21:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:11 run_atlas
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:11 job.xml
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas 409023426 Nov 28 00:11 EVNT.47483658._003233.pool.root.1
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:11 start_atlas.sh
[2025-11-29 16:21:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:11 shared
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas    590109 Nov 28 00:11 input.tar.gz
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:11 boinc_lockfile
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 28 00:11 pandaJob.out
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas        57 Nov 28 00:11 setup.sh.local
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas    991858 Nov 28 00:12 agis_schedconf.cvmfs.json
[2025-11-29 16:21:40] drwx------. 5 boincer umatlas      4096 Nov 28 00:12 pilot3
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas       533 Nov 29 14:16 boinc_task_state.xml
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas 925370619 Nov 29 16:12 HITS.47556173._001894.pool.root.1
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas      1060 Nov 29 16:18 memory_monitor_summary.json
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas   1516240 Nov 29 16:19 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas   3211184 Nov 29 16:19 log.47556173._001894.job.log.tgz.1
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas      8638 Nov 29 16:20 heartbeat.json
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas      6525 Nov 29 16:21 init_data.xml
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 16:21 boinc_mmap_file
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas        29 Nov 29 16:21 wrapper_checkpoint.txt
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas        95 Nov 29 16:21 pilot_heartbeat.json
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas      4824 Nov 29 16:21 pilotlog.txt
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas  17515504 Nov 29 16:21 log.47556173._001894.job.log.1
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas       353 Nov 29 16:21 output.list
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas       620 Nov 29 16:21 runtime_log
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas  20746240 Nov 29 16:21 result.tar.gz
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas      9344 Nov 29 16:21 runtime_log.err
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas       663 Nov 29 16:21 qEmLDmdbdi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdNNKDmjwq2zm.diag
[2025-11-29 16:21:40] -rw-r--r--. 1 boincer umatlas     21840 Nov 29 16:21 stderr.txt
[2025-11-29 16:21:40] HITS file was successfully produced:
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas 925370619 Nov 29 16:12 shared/HITS.pool.root.1
[2025-11-29 16:21:40]  *** Contents of shared directory: ***
[2025-11-29 16:21:40] total 1323988
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas 409023426 Nov 28 00:11 ATLAS.root_0
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:11 start_atlas.sh
[2025-11-29 16:21:40] -rw-r--r--. 2 boincer umatlas    590109 Nov 28 00:11 input.tar.gz
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas 925370619 Nov 29 16:12 HITS.pool.root.1
[2025-11-29 16:21:40] -rw-------. 1 boincer umatlas  20746240 Nov 29 16:21 result.tar.gz
16:21:42 (1919974): run_atlas exited; CPU time 514724.901384
16:21:42 (1919974): called boinc_finish(0)

</stderr_txt>
]]>

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