Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:53:43 (485942): wrapper (7.7.26015): starting
09:53:43 (485942): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 09:53:43] Arguments: --nthreads 12
[2025-11-28 09:53:43] Threads: 12
[2025-11-28 09:53:43] Checking for CVMFS
[2025-11-28 09:53:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 09:53:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 09:53:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 09:53:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 09:53:43] 2.13.3.0 321434 687 46744 153403 2 81 3338410 4096001 0 130560 0 468036 99.985 25400 333 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-28 09:53:43] CVMFS is ok
[2025-11-28 09:53:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 09:53:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-28 09:53:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-28 09:53:43] Further information can be found at the LHC@home message board.
[2025-11-28 09:53:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 09:53:43] Checking for apptainer binary...
[2025-11-28 09:53:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 09:53:43] Running /usr/bin/apptainer --version
[2025-11-28 09:53:43] apptainer version 1.4.2
[2025-11-28 09:53:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 09:53:43] matisse
[2025-11-28 09:53:43] apptainer works
[2025-11-28 09:53:43] Set ATHENA_PROC_NUMBER=12
[2025-11-28 09:53:43] Set ATHENA_CORE_NUMBER=12
[2025-11-28 09:53:43] Starting ATLAS job with PandaID=6898271071
[2025-11-28 09:53:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:42:09]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:42:09] 2025-11-28 11:41:04,281 | INFO     | 10037s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 12:42:09] 2025-11-28 11:41:06,286 | INFO     | time since job start (10038s) is within the limit (172800.0s)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,654 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:42:09] 2025-11-28 11:41:06,655 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2860.609875
[2025-11-28 12:42:09] 2025-11-28 11:41:06,657 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6898271071/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,657 | INFO     | extracted standard info from prmon json
[2025-11-28 12:42:09] 2025-11-28 11:41:06,657 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:42:09] 2025-11-28 11:41:06,657 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:42:09] 2025-11-28 11:41:06,658 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:42:09] 2025-11-28 11:41:06,658 | INFO     | sum of square deviations: 1392873657.9030244
[2025-11-28 12:42:09] 2025-11-28 11:41:06,658 | INFO     | sum of deviations: 47668380555.68486
[2025-11-28 12:42:09] 2025-11-28 11:41:06,658 | INFO     | mean x: 1764325047.1757576
[2025-11-28 12:42:09] 2025-11-28 11:41:06,658 | INFO     | mean y: 3475485.3212121213
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | intersect: -60377103395.980385
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | chi2: 3.168850017480282
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | sum of square deviations: 1270052292.7437482
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | sum of deviations: 84950072087.93753
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | mean x: 1764324894.68125
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | mean y: 3521073.3125
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | intersect: -118006995380.24536
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | chi2: 1.411232376107528
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | current chi2=1.411232376107528 (change=55.46547270073474 %)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,659 | INFO     | sum of square deviations: 1154672927.574192
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | sum of deviations: 79809871358.0387
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | mean x: 1764324742.1870968
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | mean y: 3514278.6193548385
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | intersect: -121944898423.4784
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | chi2: 1.4112590409459336
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | current chi2=1.4112590409459336 (change=-0.0018894718443937923 %)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | right removable region: 154
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | sum of square deviations: 1270034602.7437482
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | sum of deviations: 12276243371.693743
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | mean x: 1764325199.68125
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | mean y: 3518843.13125
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | intersect: -17050572038.571543
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | chi2: 1.8131821555146566
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | current chi2=1.8131821555146566 (change=42.78106740575837 %)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,660 | INFO     | sum of square deviations: 1154647184.9419365
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | sum of deviations: 7058679774.632256
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | mean x: 1764325352.1806452
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | mean y: 3525715.477419355
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | intersect: -10782286471.762022
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | chi2: 1.8098704801542997
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | current chi2=1.8098704801542997 (change=0.18264438298626554 %)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | left removable region: 20
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | sum of square deviations: 746062258.8358212
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | sum of deviations: 32920733682.22389
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | mean x: 1764325321.686567
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | mean y: 3579990.2910447763
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | intersect: -77849016567.3767
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | chi2: 0.008357478640102528
[2025-11-28 12:42:09] 2025-11-28 11:41:06,661 | INFO     | current memory leak: 44.13 B/s (using 134 data points, chi2=0.01)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | could have reported an average CPU frequency of 3778 MHz (9 samples)
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | ..............................
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . Timing measurements:
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . get job = 0 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . initial setup = 1 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . payload setup = 2 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . stage-in = 0 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . payload execution = 10012 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . stage-out = 0 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | . log creation = 0 s
[2025-11-28 12:42:09] 2025-11-28 11:41:06,662 | INFO     | ..............................
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | 
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | job summary report
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | --------------------------------------------------
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | PanDA job id: 6898271071
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | task id: 47556173
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | errors: (none)
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | pilot state: finished 
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | transexitcode: 0
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | exeerrorcode: 0
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | exeerrordiag: 
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | exitcode: 0
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | exitmsg: OK
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | cpuconsumptiontime: 117640 s
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | nevents: 1000
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | neventsw: 0
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | pid: 496270
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | pgrp: 496270
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | corecount: 12
[2025-11-28 12:42:09] 2025-11-28 11:41:07,079 | INFO     | event service: False
[2025-11-28 12:42:09] 2025-11-28 11:41:07,080 | INFO     | sizes: {0: 2284322, 2: 2284584, 11: 2284612, 10018: 2314313, 10019: 2323321, 10021: 2323377, 10025: 2323815}
[2025-11-28 12:42:09] 2025-11-28 11:41:07,080 | INFO     | --------------------------------------------------
[2025-11-28 12:42:09] 2025-11-28 11:41:07,080 | INFO     | 
[2025-11-28 12:42:09] 2025-11-28 11:41:07,080 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-28 12:42:09] 2025-11-28 11:41:07,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | job 6898271071 has completed (purged errors)
[2025-11-28 12:42:09] 2025-11-28 11:41:07,091 | INFO     | overall cleanup function is called
[2025-11-28 12:42:09] 2025-11-28 11:41:08,103 | INFO     | --- collectZombieJob: --- 10, [496270]
[2025-11-28 12:42:09] 2025-11-28 11:41:08,104 | INFO     | zombie collector waiting for pid 496270
[2025-11-28 12:42:09] 2025-11-28 11:41:08,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:42:09] 2025-11-28 11:41:08,104 | INFO     | collected zombie processes
[2025-11-28 12:42:09] 2025-11-28 11:41:08,104 | INFO     | will attempt to kill all subprocesses of pid=496270
[2025-11-28 12:42:09] 2025-11-28 11:41:08,160 | INFO     | process IDs to be killed: [496270] (in reverse order)
[2025-11-28 12:42:09] 2025-11-28 11:41:08,185 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:42:09] 2025-11-28 11:41:08,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:42:09] 2025-11-28 11:41:08,187 | INFO     | did not find any defunct processes belonging to 496270
[2025-11-28 12:42:09] 2025-11-28 11:41:08,189 | INFO     | did not find any defunct processes belonging to 496270
[2025-11-28 12:42:09] 2025-11-28 11:41:08,189 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:42:09] 2025-11-28 11:41:08,189 | INFO     | ready for new job
[2025-11-28 12:42:09] 2025-11-28 11:41:08,189 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:42:09] 2025-11-28 11:41:08,190 | INFO     | ***************************************
[2025-11-28 12:42:09] 2025-11-28 11:41:08,190 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:42:09] 2025-11-28 11:41:08,190 | INFO     | ***************************************
[2025-11-28 12:42:09] 2025-11-28 11:41:08,190 | INFO     | 
[2025-11-28 12:42:09] 2025-11-28 11:41:08,191 | INFO     | architecture information:
[2025-11-28 12:42:09] 2025-11-28 11:41:08,191 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:42:09] 2025-11-28 11:41:08,197 | INFO     | cat /etc/os-release:
[2025-11-28 12:42:09] NAME="CentOS Linux"
[2025-11-28 12:42:09] VERSION="7 (Core)"
[2025-11-28 12:42:09] ID="centos"
[2025-11-28 12:42:09] ID_LIKE="rhel fedora"
[2025-11-28 12:42:09] VERSION_ID="7"
[2025-11-28 12:42:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:42:09] ANSI_COLOR="0;31"
[2025-11-28 12:42:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:42:09] HOME_URL="https://www.centos.org/"
[2025-11-28 12:42:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:42:09] 
[2025-11-28 12:42:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:42:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:42:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:42:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:42:09] 
[2025-11-28 12:42:09] 2025-11-28 11:41:08,197 | INFO     | ***************************************
[2025-11-28 12:42:09] 2025-11-28 11:41:08,700 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-28 12:42:09] 2025-11-28 11:41:08,708 | INFO     | sufficient remaining disk space (448687767552 B)
[2025-11-28 12:42:09] 2025-11-28 11:41:08,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:42:09] 2025-11-28 11:41:08,708 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:42:09] 2025-11-28 11:41:08,708 | INFO     | update_server=False
[2025-11-28 12:42:09] 2025-11-28 11:41:08,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:42:09] 2025-11-28 11:41:08,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:42:09] 2025-11-28 11:41:08,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:42:09] 2025-11-28 11:41:09,162 | INFO     | all data control threads have been joined
[2025-11-28 12:42:09] 2025-11-28 11:41:09,194 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 12:42:09] 2025-11-28 11:41:09,195 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 12:42:09] 2025-11-28 11:41:09,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:42:09] 2025-11-28 11:41:09,195 | INFO     | will abort loop
[2025-11-28 12:42:09] 2025-11-28 11:41:09,470 | INFO     | all job control threads have been joined
[2025-11-28 12:42:09] 2025-11-28 11:41:09,618 | INFO     | all payload control threads have been joined
[2025-11-28 12:42:09] 2025-11-28 11:41:09,714 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:09,722 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:09,811 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:09,949 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,106 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,106 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,168 | INFO     | [data] control thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,200 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,475 | INFO     | [job] control thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,621 | INFO     | [payload] control thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,714 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,824 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:10,828 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:11,151 | INFO     | [job] validate thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:11,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:42:09] 2025-11-28 11:41:12,708 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:12,715 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:42:09] 2025-11-28 11:41:39,464 | INFO     | PID=489733 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 12:42:09] 2025-11-28 11:41:39,464 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:42:09] 2025-11-28 11:41:39,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:42:09] 2025-11-28 11:41:39,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:42:09] 2025-11-28 11:42:03,858 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:42:09] 2025-11-28 11:42:04,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137802668427072)>', '<ExcThread(monitor, started 137802322790144)>']
[2025-11-28 12:42:09] 2025-11-28 11:42:04,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:42:09] 2025-11-28 11:42:04,568 | INFO     | [monitor] control thread has ended
[2025-11-28 12:42:09] 2025-11-28 11:42:09,451 | INFO     | all workflow threads have been joined
[2025-11-28 12:42:09] 2025-11-28 11:42:09,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:42:09] 2025-11-28 11:42:09,452 | INFO     | traces error code: 0
[2025-11-28 12:42:09] 2025-11-28 11:42:09,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:42:09] 2025-11-28 11:42:09,492 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:42:09] 2025-11-28 11:42:09,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:42:09] 2025-11-28 11:42:09,495 [wrapper] pilotpid: 489733
[2025-11-28 12:42:09] 2025-11-28 11:42:09,497 [wrapper] Pilot exit status: 0
[2025-11-28 12:42:09] 2025-11-28 11:42:09,501 [wrapper] pandaids: 6898271071
[2025-11-28 12:42:09] 2025-11-28 11:42:09,519 [wrapper] cleanup supervisor_pilot  518544 489734
[2025-11-28 12:42:09] 2025-11-28 11:42:09,520 [wrapper] Test setup, not cleaning
[2025-11-28 12:42:09] 2025-11-28 11:42:09,522 [wrapper] apfmon messages muted
[2025-11-28 12:42:09] 2025-11-28 11:42:09,523 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:42:09] 2025-11-28 11:42:09,525 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:42:09]  *** Error codes and diagnostics ***
[2025-11-28 12:42:09]     "exeErrorCode": 0,
[2025-11-28 12:42:09]     "exeErrorDiag": "",
[2025-11-28 12:42:09]     "pilotErrorCode": 0,
[2025-11-28 12:42:09]     "pilotErrorDiag": "",
[2025-11-28 12:42:09]  *** Listing of results directory ***
[2025-11-28 12:42:09] total 1316776
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc    576529 Nov 26 15:19 pilot3.tar.gz
[2025-11-28 12:42:09] -rwx------ 1 boinc boinc     36292 Nov 26 15:44 runpilot2-wrapper.sh
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc      5112 Nov 26 15:44 queuedata.json
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc       100 Nov 28 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:42:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 09:53 run_atlas
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc       105 Nov 28 09:53 job.xml
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc 409850337 Nov 28 09:53 EVNT.47483658._003186.pool.root.1
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc    590100 Nov 28 09:53 input.tar.gz
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc     15847 Nov 28 09:53 start_atlas.sh
[2025-11-28 12:42:09] drwxrwx--x 2 boinc boinc      4096 Nov 28 09:53 shared
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc         0 Nov 28 09:53 boinc_setup_complete
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc      9642 Nov 28 09:53 init_data.xml
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc         0 Nov 28 09:53 boinc_lockfile
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc      2786 Nov 28 09:53 pandaJob.out
[2025-11-28 12:42:09] -rw------- 1 boinc boinc    991858 Nov 28 09:53 agis_schedconf.cvmfs.json
[2025-11-28 12:42:09] -rw------- 1 boinc boinc   1516240 Nov 28 09:53 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:42:09] drwx------ 5 boinc boinc      4096 Nov 28 09:53 pilot3
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc       531 Nov 28 12:37 boinc_task_state.xml
[2025-11-28 12:42:09] -rw------- 1 boinc boinc 927901794 Nov 28 12:40 HITS.47556173._001426.pool.root.1
[2025-11-28 12:42:09] -rw------- 1 boinc boinc      1028 Nov 28 12:40 memory_monitor_summary.json
[2025-11-28 12:42:09] -rw------- 1 boinc boinc   1908359 Nov 28 12:41 log.47556173._001426.job.log.tgz.1
[2025-11-28 12:42:09] -rw------- 1 boinc boinc        95 Nov 28 12:41 pilot_heartbeat.json
[2025-11-28 12:42:09] -rw------- 1 boinc boinc      8548 Nov 28 12:41 heartbeat.json
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc      8192 Nov 28 12:42 boinc_mmap_file
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc        29 Nov 28 12:42 wrapper_checkpoint.txt
[2025-11-28 12:42:09] -rw------- 1 boinc boinc      4941 Nov 28 12:42 pilotlog.txt
[2025-11-28 12:42:09] -rw------- 1 boinc boinc   1445129 Nov 28 12:42 log.47556173._001426.job.log.1
[2025-11-28 12:42:09] -rw------- 1 boinc boinc       353 Nov 28 12:42 output.list
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc       620 Nov 28 12:42 runtime_log
[2025-11-28 12:42:09] -rw------- 1 boinc boinc   3368960 Nov 28 12:42 result.tar.gz
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc      8895 Nov 28 12:42 runtime_log.err
[2025-11-28 12:42:09] -rw------- 1 boinc boinc       653 Nov 28 12:42 mpdKDmAwVi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh1MKDmhnGddn.diag
[2025-11-28 12:42:09] -rw-r--r-- 1 boinc boinc     21384 Nov 28 12:42 stderr.txt
[2025-11-28 12:42:09] HITS file was successfully produced:
[2025-11-28 12:42:09] -rw------- 1 boinc boinc 927901794 Nov 28 12:40 shared/HITS.pool.root.1
[2025-11-28 12:42:09]  *** Contents of shared directory: ***
[2025-11-28 12:42:09] total 1310300
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc 409850337 Nov 28 09:53 ATLAS.root_0
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc    590100 Nov 28 09:53 input.tar.gz
[2025-11-28 12:42:09] -rw-r--r-- 2 boinc boinc     15847 Nov 28 09:53 start_atlas.sh
[2025-11-28 12:42:09] -rw------- 1 boinc boinc 927901794 Nov 28 12:40 HITS.pool.root.1
[2025-11-28 12:42:09] -rw------- 1 boinc boinc   3368960 Nov 28 12:42 result.tar.gz
12:42:10 (485942): run_atlas exited; CPU time 117506.009321
12:42:10 (485942): called boinc_finish(0)

</stderr_txt>
]]>

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