Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:30 (25955): wrapper (7.7.26015): starting
04:14:30 (25955): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 04:14:30] Arguments: --nthreads 8
[2025-11-30 04:14:30] Threads: 8
[2025-11-30 04:14:30] Checking for CVMFS
[2025-11-30 04:14:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 04:14:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 04:14:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 04:14:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 04:14:33] 2.11.2.0 1477 195692 135456 153465 1 75 24951062 25165825 2504 130560 13 66962880 99.878 33830556 2303 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 04:14:33] CVMFS is ok
[2025-11-30 04:14:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 04:14:33] Checking for apptainer binary...
[2025-11-30 04:14:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 04:14:33] Running /usr/bin/apptainer --version
[2025-11-30 04:14:33] apptainer version 1.3.2-1.el7
[2025-11-30 04:14:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 04:14:39] cg-vwn317.simple-grid.lan
[2025-11-30 04:14:39] apptainer works
[2025-11-30 04:14:39] Set ATHENA_PROC_NUMBER=8
[2025-11-30 04:14:39] Set ATHENA_CORE_NUMBER=8
[2025-11-30 04:14:39] Starting ATLAS job with PandaID=6898271148
[2025-11-30 04:14:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:55:56]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:55:56] 2025-12-01 02:54:41,159 | INFO     | PID=29732 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 03:55:56] 2025-12-01 02:54:41,160 | INFO     | .. there are 9 such processes running
[2025-12-01 03:55:56] 2025-12-01 02:54:42,161 | INFO     | time since job start (84984s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:43,480 | INFO     | monitor loop #5709: job 0:6898271148 is in state 'finished'
[2025-12-01 03:55:56] 2025-12-01 02:54:43,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:55:56] 2025-12-01 02:54:44,174 | INFO     | time since job start (84986s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:45,985 | INFO     | monitor loop #5710: job 0:6898271148 is in state 'finished'
[2025-12-01 03:55:56] 2025-12-01 02:54:45,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:55:56] 2025-12-01 02:54:46,182 | INFO     | time since job start (84988s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:48,188 | INFO     | time since job start (84990s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:48,492 | INFO     | monitor loop #5711: job 0:6898271148 is in state 'finished'
[2025-12-01 03:55:56] 2025-12-01 02:54:48,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:55:56] 2025-12-01 02:54:50,200 | INFO     | time since job start (84992s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:51,002 | INFO     | monitor loop #5712: job 0:6898271148 is in state 'finished'
[2025-12-01 03:55:56] 2025-12-01 02:54:51,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,211 | INFO     | time since job start (84994s) is within the limit (172800.0s)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,239 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 03:55:56] 2025-12-01 02:54:52,240 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 03:55:56] 2025-12-01 02:54:52,242 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6898271148/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,243 | INFO     | extracted standard info from prmon json
[2025-12-01 03:55:56] 2025-12-01 02:54:52,243 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:55:56] 2025-12-01 02:54:52,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:55:56] 2025-12-01 02:54:52,268 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:55:56] 2025-12-01 02:54:52,270 | INFO     | sum of square deviations: 822026904265.5226
[2025-12-01 03:55:56] 2025-12-01 02:54:52,321 | INFO     | sum of deviations: 2940632921901.285
[2025-12-01 03:55:56] 2025-12-01 02:54:52,322 | INFO     | mean x: 1764515392.6091042
[2025-12-01 03:55:56] 2025-12-01 02:54:52,322 | INFO     | mean y: 2852535.342485549
[2025-12-01 03:55:56] 2025-12-01 02:54:52,322 | INFO     | intersect: -6309339958.337592
[2025-12-01 03:55:56] 2025-12-01 02:54:52,324 | INFO     | chi2: 20.46020117877235
[2025-12-01 03:55:56] 2025-12-01 02:54:52,326 | INFO     | sum of square deviations: 813150257154.3528
[2025-12-01 03:55:56] 2025-12-01 02:54:52,385 | INFO     | sum of deviations: 3398756980179.12
[2025-12-01 03:55:56] 2025-12-01 02:54:52,386 | INFO     | mean x: 1764515240.1131256
[2025-12-01 03:55:56] 2025-12-01 02:54:52,386 | INFO     | mean y: 2860404.915881073
[2025-12-01 03:55:56] 2025-12-01 02:54:52,386 | INFO     | intersect: -7372355228.605756
[2025-12-01 03:55:56] 2025-12-01 02:54:52,388 | INFO     | chi2: 17.268152187395224
[2025-12-01 03:55:56] 2025-12-01 02:54:52,388 | INFO     | current chi2=17.268152187395224 (change=15.60125906625448 %)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,388 | INFO     | right removable region: 1378
[2025-12-01 03:55:56] 2025-12-01 02:54:52,390 | INFO     | sum of square deviations: 813149320804.3524
[2025-12-01 03:55:56] 2025-12-01 02:54:52,448 | INFO     | sum of deviations: 2364509401919.8037
[2025-12-01 03:55:56] 2025-12-01 02:54:52,449 | INFO     | mean x: 1764515545.1131256
[2025-12-01 03:55:56] 2025-12-01 02:54:52,449 | INFO     | mean y: 2862431.3923132704
[2025-12-01 03:55:56] 2025-12-01 02:54:52,449 | INFO     | intersect: -5128069230.8595295
[2025-12-01 03:55:56] 2025-12-01 02:54:52,451 | INFO     | chi2: 15.897610835718432
[2025-12-01 03:55:56] 2025-12-01 02:54:52,451 | INFO     | current chi2=15.897610835718432 (change=22.299831283123694 %)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,451 | INFO     | left removable region: 10
[2025-12-01 03:55:56] 2025-12-01 02:54:52,453 | INFO     | sum of square deviations: 793845208757.6158
[2025-12-01 03:55:56] 2025-12-01 02:54:52,503 | INFO     | sum of deviations: 2447375007019.5737
[2025-12-01 03:55:56] 2025-12-01 02:54:52,504 | INFO     | mean x: 1764515514.622076
[2025-12-01 03:55:56] 2025-12-01 02:54:52,504 | INFO     | mean y: 2880403.51754386
[2025-12-01 03:55:56] 2025-12-01 02:54:52,504 | INFO     | intersect: -5437010298.528494
[2025-12-01 03:55:56] 2025-12-01 02:54:52,506 | INFO     | chi2: 8.89551510035576
[2025-12-01 03:55:56] 2025-12-01 02:54:52,506 | INFO     | current memory leak: 3.08 B/s (using 1368 data points, chi2=8.90)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,507 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,507 | INFO     | ..............................
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . Timing measurements:
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . get job = 0 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . initial setup = 6 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . payload setup = 160 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . stage-in = 0 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . payload execution = 84547 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . stage-out = 6 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | . log creation = 2 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,508 | INFO     | ..............................
[2025-12-01 03:55:56] 2025-12-01 02:54:52,621 | INFO     | 
[2025-12-01 03:55:56] 2025-12-01 02:54:52,621 | INFO     | job summary report
[2025-12-01 03:55:56] 2025-12-01 02:54:52,621 | INFO     | --------------------------------------------------
[2025-12-01 03:55:56] 2025-12-01 02:54:52,621 | INFO     | PanDA job id: 6898271148
[2025-12-01 03:55:56] 2025-12-01 02:54:52,621 | INFO     | task id: 47556161
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | errors: (none)
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | pilot state: finished 
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | transexitcode: 0
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | exeerrorcode: 0
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | exeerrordiag: 
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | exitcode: 0
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | exitmsg: OK
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | cpuconsumptiontime: 318042 s
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | nevents: 1000
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | neventsw: 0
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | pid: 3983
[2025-12-01 03:55:56] 2025-12-01 02:54:52,622 | INFO     | pgrp: 3983
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | corecount: 8
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | event service: False
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | sizes: {0: 2284088, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 96: 2285321, 98
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | --------------------------------------------------
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | 
[2025-12-01 03:55:56] 2025-12-01 02:54:52,623 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-01 03:55:56] 2025-12-01 02:54:53,120 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,121 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,122 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | job 6898271148 has completed (purged errors)
[2025-12-01 03:55:56] 2025-12-01 02:54:53,123 | INFO     | overall cleanup function is called
[2025-12-01 03:55:56] 2025-12-01 02:54:54,142 | INFO     | --- collectZombieJob: --- 10, [3983]
[2025-12-01 03:55:56] 2025-12-01 02:54:54,142 | INFO     | zombie collector waiting for pid 3983
[2025-12-01 03:55:56] 2025-12-01 02:54:54,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:55:56] 2025-12-01 02:54:54,142 | INFO     | collected zombie processes
[2025-12-01 03:55:56] 2025-12-01 02:54:54,143 | INFO     | will attempt to kill all subprocesses of pid=3983
[2025-12-01 03:55:56] 2025-12-01 02:54:54,275 | INFO     | process IDs to be killed: [3983] (in reverse order)
[2025-12-01 03:55:56] 2025-12-01 02:54:55,120 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:55:56] 2025-12-01 02:54:55,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:55:56] 2025-12-01 02:54:55,123 | INFO     | did not find any defunct processes belonging to 3983
[2025-12-01 03:55:56] 2025-12-01 02:54:55,126 | INFO     | did not find any defunct processes belonging to 3983
[2025-12-01 03:55:56] 2025-12-01 02:54:55,148 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:55:56] 2025-12-01 02:54:55,149 | INFO     | ready for new job
[2025-12-01 03:55:56] 2025-12-01 02:54:55,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:55:56] 2025-12-01 02:54:55,154 | INFO     | ***************************************
[2025-12-01 03:55:56] 2025-12-01 02:54:55,154 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:55:56] 2025-12-01 02:54:55,154 | INFO     | ***************************************
[2025-12-01 03:55:56] 2025-12-01 02:54:55,154 | INFO     | 
[2025-12-01 03:55:56] 2025-12-01 02:54:55,155 | INFO     | pilot is running in a VM
[2025-12-01 03:55:56] 2025-12-01 02:54:55,155 | INFO     | architecture information:
[2025-12-01 03:55:56] 2025-12-01 02:54:55,161 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:55:56] 2025-12-01 02:54:55,460 | INFO     | cat /etc/os-release:
[2025-12-01 03:55:56] NAME="CentOS Linux"
[2025-12-01 03:55:56] VERSION="7 (Core)"
[2025-12-01 03:55:56] ID="centos"
[2025-12-01 03:55:56] ID_LIKE="rhel fedora"
[2025-12-01 03:55:56] VERSION_ID="7"
[2025-12-01 03:55:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:55:56] ANSI_COLOR="0;31"
[2025-12-01 03:55:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:55:56] HOME_URL="https://www.centos.org/"
[2025-12-01 03:55:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:55:56] 
[2025-12-01 03:55:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:55:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:55:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:55:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:55:56] 
[2025-12-01 03:55:56] 2025-12-01 02:54:55,461 | INFO     | ***************************************
[2025-12-01 03:55:56] 2025-12-01 02:54:55,964 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-01 03:55:56] 2025-12-01 02:54:56,229 | INFO     | sufficient remaining disk space (488029290496 B)
[2025-12-01 03:55:56] 2025-12-01 02:54:56,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:55:56] 2025-12-01 02:54:56,229 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:55:56] 2025-12-01 02:54:56,229 | INFO     | update_server=False
[2025-12-01 03:55:56] 2025-12-01 02:54:56,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:55:56] 2025-12-01 02:54:56,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:55:56] 2025-12-01 02:54:56,483 | INFO     | all data control threads have been joined
[2025-12-01 03:55:56] 2025-12-01 02:54:57,016 | INFO     | all payload control threads have been joined
[2025-12-01 03:55:56] 2025-12-01 02:54:57,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:55:56] 2025-12-01 02:54:57,024 | INFO     | aborting loop
[2025-12-01 03:55:56] 2025-12-01 02:54:57,235 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,331 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,489 | INFO     | [data] control thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,633 | INFO     | [job] validate thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:55:56] 2025-12-01 02:54:57,675 | INFO     | all job control threads have been joined
[2025-12-01 03:55:56] 2025-12-01 02:54:57,685 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,766 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,806 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:57,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,022 | INFO     | [payload] control thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,024 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,030 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,080 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,237 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,649 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,681 | INFO     | [job] control thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:54:58,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:55:56] 2025-12-01 02:55:02,828 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:55:56] 2025-12-01 02:55:25,363 | INFO     | PID=29732 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 03:55:56] 2025-12-01 02:55:25,364 | INFO     | .. there are 9 such processes running
[2025-12-01 03:55:56] 2025-12-01 02:55:25,365 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:55:56] 2025-12-01 02:55:25,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:55:56] 2025-12-01 02:55:25,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:55:56] 2025-12-01 02:55:46,431 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:55:56] 2025-12-01 02:55:46,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139904452052800)>', '<ExcThread(monitor, started 139904155625216)>']
[2025-12-01 03:55:56] 2025-12-01 02:55:47,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:55:56] 2025-12-01 02:55:47,494 | INFO     | [monitor] control thread has ended
[2025-12-01 03:55:56] 2025-12-01 02:55:51,795 | INFO     | all workflow threads have been joined
[2025-12-01 03:55:56] 2025-12-01 02:55:51,795 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:55:56] 2025-12-01 02:55:51,795 | INFO     | traces error code: 0
[2025-12-01 03:55:56] 2025-12-01 02:55:51,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:55:56] 2025-12-01 02:55:52,095 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:55:56] 2025-12-01 02:55:52,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:55:56] 2025-12-01 02:55:52,170 [wrapper] pilotpid: 29732
[2025-12-01 03:55:56] 2025-12-01 02:55:52,247 [wrapper] Pilot exit status: 0
[2025-12-01 03:55:56] 2025-12-01 02:55:52,569 [wrapper] pandaids: 6898271148
[2025-12-01 03:55:56] 2025-12-01 02:55:53,112 [wrapper] cleanup supervisor_pilot  7919 29733
[2025-12-01 03:55:56] 2025-12-01 02:55:53,172 [wrapper] Test setup, not cleaning
[2025-12-01 03:55:56] 2025-12-01 02:55:53,228 [wrapper] apfmon messages muted
[2025-12-01 03:55:56] 2025-12-01 02:55:53,324 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:55:56] 2025-12-01 02:55:53,422 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:55:56]  *** Error codes and diagnostics ***
[2025-12-01 03:55:56]     "exeErrorCode": 0,
[2025-12-01 03:55:56]     "exeErrorDiag": "",
[2025-12-01 03:55:56]     "pilotErrorCode": 0,
[2025-12-01 03:55:56]     "pilotErrorDiag": "",
[2025-12-01 03:55:56]  *** Listing of results directory ***
[2025-12-01 03:55:56] total 1324048
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc    576529 Nov 26 15:19 pilot3.tar.gz
[2025-12-01 03:55:56] -rwx------. 1 boinc boinc     36292 Nov 26 15:41 runpilot2-wrapper.sh
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc      5112 Nov 26 15:41 queuedata.json
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc       100 Nov 30 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:55:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 04:14 run_atlas
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc       105 Nov 30 04:14 job.xml
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc 409913678 Nov 30 04:14 EVNT.47483658._002521.pool.root.1
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc     15847 Nov 30 04:14 start_atlas.sh
[2025-12-01 03:55:56] drwxrwx--x. 2 boinc boinc        68 Nov 30 04:14 shared
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc    590102 Nov 30 04:14 input.tar.gz
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc      6391 Nov 30 04:14 init_data.xml
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc         0 Nov 30 04:14 boinc_lockfile
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc      2785 Nov 30 04:14 pandaJob.out
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc    991420 Nov 30 04:18 agis_schedconf.cvmfs.json
[2025-12-01 03:55:56] drwx------. 5 boinc boinc      4096 Nov 30 04:18 pilot3
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc       533 Dec  1 03:32 boinc_task_state.xml
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc 914456505 Dec  1 03:52 HITS.47556161._005040.pool.root.1
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc      1032 Dec  1 03:53 memory_monitor_summary.json
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc   1516240 Dec  1 03:53 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc   2467214 Dec  1 03:53 log.47556161._005040.job.log.tgz.1
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc      8625 Dec  1 03:54 heartbeat.json
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc        95 Dec  1 03:55 pilot_heartbeat.json
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc      4885 Dec  1 03:55 pilotlog.txt
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc  11307393 Dec  1 03:55 log.47556161._005040.job.log.1
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc       353 Dec  1 03:55 output.list
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc      8192 Dec  1 03:55 boinc_mmap_file
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc       620 Dec  1 03:55 runtime_log
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc  13793280 Dec  1 03:55 result.tar.gz
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc        29 Dec  1 03:55 wrapper_checkpoint.txt
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc      8833 Dec  1 03:55 runtime_log.err
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc       662 Dec  1 03:55 pnJKDm4sVi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR1MKDm8WVqkm.diag
[2025-12-01 03:55:56] -rw-r--r--. 1 boinc boinc     21494 Dec  1 03:55 stderr.txt
[2025-12-01 03:55:56] HITS file was successfully produced:
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc 914456505 Dec  1 03:52 shared/HITS.pool.root.1
[2025-12-01 03:55:56]  *** Contents of shared directory: ***
[2025-12-01 03:55:56] total 1307400
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc 409913678 Nov 30 04:14 ATLAS.root_0
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc     15847 Nov 30 04:14 start_atlas.sh
[2025-12-01 03:55:56] -rw-r--r--. 2 boinc boinc    590102 Nov 30 04:14 input.tar.gz
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc 914456505 Dec  1 03:52 HITS.pool.root.1
[2025-12-01 03:55:56] -rw-------. 1 boinc boinc  13793280 Dec  1 03:55 result.tar.gz
03:55:57 (25955): run_atlas exited; CPU time 318677.109566
03:55:57 (25955): called boinc_finish(0)

</stderr_txt>
]]>

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