Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:16:55 (14194): wrapper (7.7.26015): starting
05:16:55 (14194): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 05:16:55] Arguments: --nthreads 8
[2025-11-30 05:16:55] Threads: 8
[2025-11-30 05:16:55] Checking for CVMFS
[2025-11-30 05:16:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 05:16:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 05:16:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 05:16:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 05:16:57] 2.11.2.0 19320 84033 112280 153468 3 11 18228927 25165824 2504 130560 11 27640297 99.881 17659756 1605 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 05:16:57] CVMFS is ok
[2025-11-30 05:16:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 05:16:57] Checking for apptainer binary...
[2025-11-30 05:16:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 05:16:57] Running /usr/bin/apptainer --version
[2025-11-30 05:16:57] apptainer version 1.3.2-1.el7
[2025-11-30 05:16:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 05:17:03] cg-vwn360.simple-grid.lan
[2025-11-30 05:17:03] apptainer works
[2025-11-30 05:17:03] Set ATHENA_PROC_NUMBER=8
[2025-11-30 05:17:03] Set ATHENA_CORE_NUMBER=8
[2025-11-30 05:17:03] Starting ATLAS job with PandaID=6898720545
[2025-11-30 05:17:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 04:42:37]  *** The last 200 lines of the pilot log: ***
[2025-12-01 04:42:37] 2025-12-01 03:41:49,107 | INFO     | time since job start (84065s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:41:51,114 | INFO     | time since job start (84067s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:41:51,433 | INFO     | monitor loop #5668: job 0:6898720545 is in state 'finished'
[2025-12-01 04:42:37] 2025-12-01 03:41:51,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:42:37] 2025-12-01 03:41:53,121 | INFO     | time since job start (84069s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:41:53,945 | INFO     | monitor loop #5669: job 0:6898720545 is in state 'finished'
[2025-12-01 04:42:37] 2025-12-01 03:41:53,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:42:37] 2025-12-01 03:41:55,129 | INFO     | time since job start (84071s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:41:56,449 | INFO     | monitor loop #5670: job 0:6898720545 is in state 'finished'
[2025-12-01 04:42:37] 2025-12-01 03:41:56,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:42:37] 2025-12-01 03:41:57,136 | INFO     | time since job start (84073s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:41:58,956 | INFO     | monitor loop #5671: job 0:6898720545 is in state 'finished'
[2025-12-01 04:42:37] 2025-12-01 03:41:58,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 04:42:37] 2025-12-01 03:41:59,143 | INFO     | time since job start (84075s) is within the limit (172800.0s)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,336 | INFO     | PID=17965 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:42:37] 2025-12-01 03:42:00,336 | INFO     | .. there are 9 such processes running
[2025-12-01 04:42:37] 2025-12-01 03:42:00,675 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 04:42:37] 2025-12-01 03:42:00,676 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 04:42:37] 2025-12-01 03:42:00,678 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6898720545/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,679 | INFO     | extracted standard info from prmon json
[2025-12-01 04:42:37] 2025-12-01 03:42:00,679 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 04:42:37] 2025-12-01 03:42:00,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 04:42:37] 2025-12-01 03:42:00,705 | INFO     | fitting pss+swap vs Time
[2025-12-01 04:42:37] 2025-12-01 03:42:00,708 | INFO     | sum of square deviations: 795589468118.3522
[2025-12-01 04:42:37] 2025-12-01 03:42:00,757 | INFO     | sum of deviations: 2918366425820.0186
[2025-12-01 04:42:37] 2025-12-01 03:42:00,758 | INFO     | mean x: 1764518661.1395178
[2025-12-01 04:42:37] 2025-12-01 03:42:00,758 | INFO     | mean y: 2842135.0679327976
[2025-12-01 04:42:37] 2025-12-01 03:42:00,758 | INFO     | intersect: -6469732257.579024
[2025-12-01 04:42:37] 2025-12-01 03:42:00,760 | INFO     | chi2: 20.327956644194433
[2025-12-01 04:42:37] 2025-12-01 03:42:00,762 | INFO     | sum of square deviations: 786904553156.8345
[2025-12-01 04:42:37] 2025-12-01 03:42:00,813 | INFO     | sum of deviations: 3372356774240.224
[2025-12-01 04:42:37] 2025-12-01 03:42:00,814 | INFO     | mean x: 1764518508.643695
[2025-12-01 04:42:37] 2025-12-01 03:42:00,814 | INFO     | mean y: 2850105.92228739
[2025-12-01 04:42:37] 2025-12-01 03:42:00,814 | INFO     | intersect: -7559167323.033723
[2025-12-01 04:42:37] 2025-12-01 03:42:00,816 | INFO     | chi2: 17.108292311869015
[2025-12-01 04:42:37] 2025-12-01 03:42:00,816 | INFO     | current chi2=17.108292311869015 (change=15.838602908693922 %)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,816 | INFO     | right removable region: 1363
[2025-12-01 04:42:37] 2025-12-01 03:42:00,818 | INFO     | sum of square deviations: 786903601556.8363
[2025-12-01 04:42:37] 2025-12-01 03:42:00,870 | INFO     | sum of deviations: 2341899807779.878
[2025-12-01 04:42:37] 2025-12-01 03:42:00,870 | INFO     | mean x: 1764518813.643695
[2025-12-01 04:42:37] 2025-12-01 03:42:00,870 | INFO     | mean y: 2852255.921554252
[2025-12-01 04:42:37] 2025-12-01 03:42:00,870 | INFO     | intersect: -5248523214.11139
[2025-12-01 04:42:37] 2025-12-01 03:42:00,872 | INFO     | chi2: 15.61894548528601
[2025-12-01 04:42:37] 2025-12-01 03:42:00,872 | INFO     | current chi2=15.61894548528601 (change=23.165196784563655 %)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,873 | INFO     | left removable region: 10
[2025-12-01 04:42:37] 2025-12-01 03:42:00,874 | INFO     | sum of square deviations: 768018829129.3297
[2025-12-01 04:42:37] 2025-12-01 03:42:00,923 | INFO     | sum of deviations: 2418022804499.365
[2025-12-01 04:42:37] 2025-12-01 03:42:00,924 | INFO     | mean x: 1764518783.1529934
[2025-12-01 04:42:37] 2025-12-01 03:42:00,924 | INFO     | mean y: 2870669.1818181816
[2025-12-01 04:42:37] 2025-12-01 03:42:00,924 | INFO     | intersect: -5552522629.532387
[2025-12-01 04:42:37] 2025-12-01 03:42:00,925 | INFO     | chi2: 8.385698767415546
[2025-12-01 04:42:37] 2025-12-01 03:42:00,926 | INFO     | current memory leak: 3.15 B/s (using 1353 data points, chi2=8.39)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | ..............................
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | . Timing measurements:
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | . get job = 0 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | . initial setup = 6 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,927 | INFO     | . payload setup = 139 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,928 | INFO     | . stage-in = 0 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,928 | INFO     | . payload execution = 83643 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,928 | INFO     | . stage-out = 5 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,928 | INFO     | . log creation = 2 s
[2025-12-01 04:42:37] 2025-12-01 03:42:00,928 | INFO     | ..............................
[2025-12-01 04:42:37] 2025-12-01 03:42:01,055 | INFO     | 
[2025-12-01 04:42:37] 2025-12-01 03:42:01,055 | INFO     | job summary report
[2025-12-01 04:42:37] 2025-12-01 03:42:01,055 | INFO     | --------------------------------------------------
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | PanDA job id: 6898720545
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | task id: 47556161
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | errors: (none)
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | pilot state: finished 
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | transexitcode: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | exeerrorcode: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | exeerrordiag: 
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | exitcode: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:01,056 | INFO     | exitmsg: OK
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | cpuconsumptiontime: 313760 s
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | nevents: 1000
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | neventsw: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | pid: 24572
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | pgrp: 24572
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | corecount: 8
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | event service: False
[2025-12-01 04:42:37] 2025-12-01 03:42:01,057 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 65: 2284638, 76: 2284666, 87: 2284722, 98: 2284750, 99: 2285320, 1
[2025-12-01 04:42:37] 2025-12-01 03:42:01,058 | INFO     | --------------------------------------------------
[2025-12-01 04:42:37] 2025-12-01 03:42:01,058 | INFO     | 
[2025-12-01 04:42:37] 2025-12-01 03:42:01,058 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-01 04:42:37] 2025-12-01 03:42:01,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,238 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,238 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 04:42:37] 2025-12-01 03:42:01,241 | INFO     | job 6898720545 has completed (purged errors)
[2025-12-01 04:42:37] 2025-12-01 03:42:01,241 | INFO     | overall cleanup function is called
[2025-12-01 04:42:37] 2025-12-01 03:42:02,257 | INFO     | --- collectZombieJob: --- 10, [24572]
[2025-12-01 04:42:37] 2025-12-01 03:42:02,258 | INFO     | zombie collector waiting for pid 24572
[2025-12-01 04:42:37] 2025-12-01 03:42:02,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 04:42:37] 2025-12-01 03:42:02,258 | INFO     | collected zombie processes
[2025-12-01 04:42:37] 2025-12-01 03:42:02,258 | INFO     | will attempt to kill all subprocesses of pid=24572
[2025-12-01 04:42:37] 2025-12-01 03:42:02,384 | INFO     | process IDs to be killed: [24572] (in reverse order)
[2025-12-01 04:42:37] 2025-12-01 03:42:03,112 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 04:42:37] 2025-12-01 03:42:03,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 04:42:37] 2025-12-01 03:42:03,116 | INFO     | did not find any defunct processes belonging to 24572
[2025-12-01 04:42:37] 2025-12-01 03:42:03,119 | INFO     | did not find any defunct processes belonging to 24572
[2025-12-01 04:42:37] 2025-12-01 03:42:03,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 04:42:37] 2025-12-01 03:42:03,161 | INFO     | ready for new job
[2025-12-01 04:42:37] 2025-12-01 03:42:03,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 04:42:37] 2025-12-01 03:42:03,167 | INFO     | ***************************************
[2025-12-01 04:42:37] 2025-12-01 03:42:03,167 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 04:42:37] 2025-12-01 03:42:03,167 | INFO     | ***************************************
[2025-12-01 04:42:37] 2025-12-01 03:42:03,167 | INFO     | 
[2025-12-01 04:42:37] 2025-12-01 03:42:03,168 | INFO     | pilot is running in a VM
[2025-12-01 04:42:37] 2025-12-01 03:42:03,168 | INFO     | architecture information:
[2025-12-01 04:42:37] 2025-12-01 03:42:03,177 | INFO     | executing command: cat /etc/os-release
[2025-12-01 04:42:37] 2025-12-01 03:42:03,360 | INFO     | cat /etc/os-release:
[2025-12-01 04:42:37] NAME="CentOS Linux"
[2025-12-01 04:42:37] VERSION="7 (Core)"
[2025-12-01 04:42:37] ID="centos"
[2025-12-01 04:42:37] ID_LIKE="rhel fedora"
[2025-12-01 04:42:37] VERSION_ID="7"
[2025-12-01 04:42:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 04:42:37] ANSI_COLOR="0;31"
[2025-12-01 04:42:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 04:42:37] HOME_URL="https://www.centos.org/"
[2025-12-01 04:42:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 04:42:37] 
[2025-12-01 04:42:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 04:42:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 04:42:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 04:42:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 04:42:37] 
[2025-12-01 04:42:37] 2025-12-01 03:42:03,360 | INFO     | ***************************************
[2025-12-01 04:42:37] 2025-12-01 03:42:03,863 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-01 04:42:37] 2025-12-01 03:42:04,146 | INFO     | sufficient remaining disk space (488141488128 B)
[2025-12-01 04:42:37] 2025-12-01 03:42:04,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 04:42:37] 2025-12-01 03:42:04,146 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 04:42:37] 2025-12-01 03:42:04,147 | INFO     | update_server=False
[2025-12-01 04:42:37] 2025-12-01 03:42:04,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 04:42:37] 2025-12-01 03:42:04,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 04:42:37] 2025-12-01 03:42:04,464 | INFO     | all data control threads have been joined
[2025-12-01 04:42:37] 2025-12-01 03:42:04,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:42:37] 2025-12-01 03:42:04,995 | INFO     | aborting loop
[2025-12-01 04:42:37] 2025-12-01 03:42:05,012 | INFO     | all job control threads have been joined
[2025-12-01 04:42:37] 2025-12-01 03:42:05,152 | INFO     | [job] retrieve thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:05,267 | INFO     | all payload control threads have been joined
[2025-12-01 04:42:37] 2025-12-01 03:42:05,311 | INFO     | [payload] validate_post thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:05,470 | INFO     | [data] control thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:05,984 | INFO     | [job] validate thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,000 | INFO     | [job] job monitor thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,018 | INFO     | [job] control thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 04:42:37] 2025-12-01 03:42:06,119 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,145 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,152 | INFO     | [payload] failed_post thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,156 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,273 | INFO     | [payload] control thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,341 | INFO     | [data] copytool_in thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,344 | INFO     | [data] copytool_out thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:06,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 04:42:37] 2025-12-01 03:42:07,080 | INFO     | [job] queue monitor thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:10,810 | INFO     | [monitor] cgroup control has ended
[2025-12-01 04:42:37] 2025-12-01 03:42:10,963 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 04:42:37] 2025-12-01 03:42:11,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109801232192)>', '<ExcThread(monitor, started 140109508749056)>']
[2025-12-01 04:42:37] 2025-12-01 03:42:16,842 | INFO     | all workflow threads have been joined
[2025-12-01 04:42:37] 2025-12-01 03:42:16,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 04:42:37] 2025-12-01 03:42:16,843 | INFO     | traces error code: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:16,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 04:42:37] 2025-12-01 03:42:32,513 | INFO     | PID=17965 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 04:42:37] 2025-12-01 03:42:32,514 | INFO     | .. there are 9 such processes running
[2025-12-01 04:42:37] 2025-12-01 03:42:32,515 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 04:42:37] 2025-12-01 03:42:32,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 04:42:37] 2025-12-01 03:42:32,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 04:42:37] 2025-12-01 03:42:32,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 04:42:37] 2025-12-01 03:42:32,515 | INFO     | [monitor] control thread has ended
[2025-12-01 04:42:37] 2025-12-01 03:42:32,819 [wrapper] ==== pilot stdout END ====
[2025-12-01 04:42:37] 2025-12-01 03:42:32,926 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 04:42:37] 2025-12-01 03:42:33,060 [wrapper] pilotpid: 17965
[2025-12-01 04:42:37] 2025-12-01 03:42:33,184 [wrapper] Pilot exit status: 0
[2025-12-01 04:42:37] 2025-12-01 03:42:33,517 [wrapper] pandaids: 6898720545
[2025-12-01 04:42:37] 2025-12-01 03:42:34,353 [wrapper] cleanup supervisor_pilot  6965 17966
[2025-12-01 04:42:37] 2025-12-01 03:42:34,454 [wrapper] Test setup, not cleaning
[2025-12-01 04:42:37] 2025-12-01 03:42:34,557 [wrapper] apfmon messages muted
[2025-12-01 04:42:37] 2025-12-01 03:42:34,659 [wrapper] ==== wrapper stdout END ====
[2025-12-01 04:42:37] 2025-12-01 03:42:34,768 [wrapper] ==== wrapper stderr END ====
[2025-12-01 04:42:37]  *** Error codes and diagnostics ***
[2025-12-01 04:42:37]     "exeErrorCode": 0,
[2025-12-01 04:42:37]     "exeErrorDiag": "",
[2025-12-01 04:42:37]     "pilotErrorCode": 0,
[2025-12-01 04:42:37]     "pilotErrorDiag": "",
[2025-12-01 04:42:37]  *** Listing of results directory ***
[2025-12-01 04:42:37] total 1322656
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc      5112 Nov 26 23:04 queuedata.json
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc    576529 Nov 26 23:04 pilot3.tar.gz
[2025-12-01 04:42:37] -rwx------. 1 boinc boinc     36292 Nov 26 23:05 runpilot2-wrapper.sh
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc       100 Nov 30 05:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 04:42:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 05:16 run_atlas
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc       105 Nov 30 05:16 job.xml
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc 410078413 Nov 30 05:16 EVNT.47483658._002696.pool.root.1
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc     15847 Nov 30 05:16 start_atlas.sh
[2025-12-01 04:42:37] drwxrwx--x. 2 boinc boinc        68 Nov 30 05:16 shared
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc    590110 Nov 30 05:16 input.tar.gz
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc      6391 Nov 30 05:16 init_data.xml
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc         0 Nov 30 05:16 boinc_lockfile
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc      2785 Nov 30 05:17 pandaJob.out
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc    991196 Nov 30 05:20 agis_schedconf.cvmfs.json
[2025-12-01 04:42:37] drwx------. 5 boinc boinc      4096 Nov 30 05:20 pilot3
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc       533 Dec  1 04:17 boinc_task_state.xml
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc 913082233 Dec  1 04:39 HITS.47556161._006783.pool.root.1
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc      1031 Dec  1 04:40 memory_monitor_summary.json
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc   1516240 Dec  1 04:40 agis_ddmendpoints.agis.ALL.json
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc   2458652 Dec  1 04:40 log.47556161._006783.job.log.tgz.1
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc      8625 Dec  1 04:42 heartbeat.json
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc        29 Dec  1 04:42 wrapper_checkpoint.txt
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc      8192 Dec  1 04:42 boinc_mmap_file
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc        95 Dec  1 04:42 pilot_heartbeat.json
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc       820 Dec  1 04:42 pilotlog.txt
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc  11207665 Dec  1 04:42 log.47556161._006783.job.log.1
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc       353 Dec  1 04:42 output.list
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc       620 Dec  1 04:42 runtime_log
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc  13690880 Dec  1 04:42 result.tar.gz
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc      8817 Dec  1 04:42 runtime_log.err
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc       662 Dec  1 04:42 3ZYMDmZoci8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGLNKDm8UKgVm.diag
[2025-12-01 04:42:37] -rw-r--r--. 1 boinc boinc     21497 Dec  1 04:42 stderr.txt
[2025-12-01 04:42:37] HITS file was successfully produced:
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc 913082233 Dec  1 04:39 shared/HITS.pool.root.1
[2025-12-01 04:42:37]  *** Contents of shared directory: ***
[2025-12-01 04:42:37] total 1306120
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc 410078413 Nov 30 05:16 ATLAS.root_0
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc     15847 Nov 30 05:16 start_atlas.sh
[2025-12-01 04:42:37] -rw-r--r--. 2 boinc boinc    590110 Nov 30 05:16 input.tar.gz
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc 913082233 Dec  1 04:39 HITS.pool.root.1
[2025-12-01 04:42:37] -rw-------. 1 boinc boinc  13690880 Dec  1 04:42 result.tar.gz
04:42:39 (14194): run_atlas exited; CPU time 314355.387933
04:42:39 (14194): called boinc_finish(0)

</stderr_txt>
]]>

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