Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:23:43 (30739): wrapper (7.7.26015): starting
03:23:43 (30739): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 03:23:43] Arguments: --nthreads 8
[2025-11-30 03:23:43] Threads: 8
[2025-11-30 03:23:43] Checking for CVMFS
[2025-11-30 03:23:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 03:23:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 03:23:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 03:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 03:23:46] 2.11.2.0 1038 177331 134296 153464 2 75 25131439 25165825 2504 130560 10 58671602 99.890 29412812 2272 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 03:23:46] CVMFS is ok
[2025-11-30 03:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 03:23:46] Checking for apptainer binary...
[2025-11-30 03:23:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 03:23:46] Running /usr/bin/apptainer --version
[2025-11-30 03:23:46] apptainer version 1.3.2-1.el7
[2025-11-30 03:23:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 03:23:52] cg-vwn304.simple-grid.lan
[2025-11-30 03:23:52] apptainer works
[2025-11-30 03:23:52] Set ATHENA_PROC_NUMBER=8
[2025-11-30 03:23:52] Set ATHENA_CORE_NUMBER=8
[2025-11-30 03:23:53] Starting ATLAS job with PandaID=6892527843
[2025-11-30 03:23:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 02:52:15]  *** The last 200 lines of the pilot log: ***
[2025-12-01 02:52:16] 2025-12-01 01:51:01,465 | INFO     | monitor loop #5668: job 0:6892527843 is in state 'finished'
[2025-12-01 02:52:16] 2025-12-01 01:51:01,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:52:16] 2025-12-01 01:51:02,480 | INFO     | time since job start (84204s) is within the limit (172800.0s)
[2025-12-01 02:52:16] 2025-12-01 01:51:03,629 | INFO     | PID=2203 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 02:52:16] 2025-12-01 01:51:03,630 | INFO     | .. there are 9 such processes running
[2025-12-01 02:52:16] 2025-12-01 01:51:03,976 | INFO     | monitor loop #5669: job 0:6892527843 is in state 'finished'
[2025-12-01 02:52:16] 2025-12-01 01:51:03,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 02:52:16] 2025-12-01 01:51:04,632 | INFO     | time since job start (84206s) is within the limit (172800.0s)
[2025-12-01 02:52:16] 2025-12-01 01:51:05,589 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 02:52:16] 2025-12-01 01:51:05,590 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-01 02:52:16] 2025-12-01 01:51:05,592 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6892527843/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 02:52:16] 2025-12-01 01:51:05,593 | INFO     | extracted standard info from prmon json
[2025-12-01 02:52:16] 2025-12-01 01:51:05,593 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 02:52:16] 2025-12-01 01:51:05,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 02:52:16] 2025-12-01 01:51:05,655 | INFO     | fitting pss+swap vs Time
[2025-12-01 02:52:16] 2025-12-01 01:51:05,657 | INFO     | sum of square deviations: 799080179694.3901
[2025-12-01 02:52:16] 2025-12-01 01:51:05,763 | INFO     | sum of deviations: 3147688029965.2065
[2025-12-01 02:52:16] 2025-12-01 01:51:05,763 | INFO     | mean x: 1764511931.1393144
[2025-12-01 02:52:16] 2025-12-01 01:51:05,763 | INFO     | mean y: 2847697.365426696
[2025-12-01 02:52:16] 2025-12-01 01:51:05,763 | INFO     | intersect: -6947810353.622899
[2025-12-01 02:52:16] 2025-12-01 01:51:05,765 | INFO     | chi2: 16.712768828394616
[2025-12-01 02:52:16] 2025-12-01 01:51:05,767 | INFO     | sum of square deviations: 790369823005.3767
[2025-12-01 02:52:16] 2025-12-01 01:51:05,836 | INFO     | sum of deviations: 3617996928545.1235
[2025-12-01 02:52:16] 2025-12-01 01:51:05,836 | INFO     | mean x: 1764511778.6434846
[2025-12-01 02:52:16] 2025-12-01 01:51:05,836 | INFO     | mean y: 2855931.098828697
[2025-12-01 02:52:16] 2025-12-01 01:51:05,836 | INFO     | intersect: -8074373246.55209
[2025-12-01 02:52:16] 2025-12-01 01:51:05,838 | INFO     | chi2: 13.328897451115997
[2025-12-01 02:52:16] 2025-12-01 01:51:05,838 | INFO     | current chi2=13.328897451115997 (change=20.247221821973014 %)
[2025-12-01 02:52:16] 2025-12-01 01:51:05,838 | INFO     | right removable region: 1365
[2025-12-01 02:52:16] 2025-12-01 01:51:05,841 | INFO     | sum of square deviations: 790368870185.3772
[2025-12-01 02:52:16] 2025-12-01 01:51:05,905 | INFO     | sum of deviations: 2580847177450.0664
[2025-12-01 02:52:16] 2025-12-01 01:51:05,906 | INFO     | mean x: 1764512083.6434846
[2025-12-01 02:52:16] 2025-12-01 01:51:05,906 | INFO     | mean y: 2857619.591508053
[2025-12-01 02:52:16] 2025-12-01 01:51:05,906 | INFO     | intersect: -5758928050.914112
[2025-12-01 02:52:16] 2025-12-01 01:51:05,908 | INFO     | chi2: 12.189875391964806
[2025-12-01 02:52:16] 2025-12-01 01:51:05,908 | INFO     | current chi2=12.189875391964806 (change=27.062502227312063 %)
[2025-12-01 02:52:16] 2025-12-01 01:51:05,910 | INFO     | sum of square deviations: 781721096751.3165
[2025-12-01 02:52:16] 2025-12-01 01:51:05,987 | INFO     | sum of deviations: 2166123963579.0105
[2025-12-01 02:52:16] 2025-12-01 01:51:05,987 | INFO     | mean x: 1764512236.1476855
[2025-12-01 02:52:16] 2025-12-01 01:51:05,987 | INFO     | mean y: 2864931.7810433507
[2025-12-01 02:52:16] 2025-12-01 01:51:05,987 | INFO     | intersect: -4886541602.892284
[2025-12-01 02:52:16] 2025-12-01 01:51:05,989 | INFO     | chi2: 9.878127133721424
[2025-12-01 02:52:16] 2025-12-01 01:51:05,989 | INFO     | current chi2=9.878127133721424 (change=18.96449458184959 %)
[2025-12-01 02:52:16] 2025-12-01 01:51:05,989 | INFO     | left removable region: 20
[2025-12-01 02:52:16] 2025-12-01 01:51:05,991 | INFO     | sum of square deviations: 754474444509.1417
[2025-12-01 02:52:16] 2025-12-01 01:51:06,044 | INFO     | sum of deviations: 2530784047073.6016
[2025-12-01 02:52:16] 2025-12-01 01:51:06,044 | INFO     | mean x: 1764512358.1539032
[2025-12-01 02:52:16] 2025-12-01 01:51:06,044 | INFO     | mean y: 2879205.1613382897
[2025-12-01 02:52:16] 2025-12-01 01:51:06,044 | INFO     | intersect: -5915942511.570793
[2025-12-01 02:52:16] 2025-12-01 01:51:06,046 | INFO     | chi2: 5.208430035159137
[2025-12-01 02:52:16] 2025-12-01 01:51:06,046 | INFO     | current memory leak: 3.35 B/s (using 1345 data points, chi2=5.21)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,048 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,048 | INFO     | ..............................
[2025-12-01 02:52:16] 2025-12-01 01:51:06,048 | INFO     | . Timing measurements:
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . get job = 0 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . initial setup = 8 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . payload setup = 155 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . stage-in = 0 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . payload execution = 83779 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . stage-out = 4 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | . log creation = 2 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,049 | INFO     | ..............................
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | 
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | job summary report
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | --------------------------------------------------
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | PanDA job id: 6892527843
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | task id: 47493029
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | errors: (none)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,193 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | pilot state: finished 
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | transexitcode: 0
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | exeerrorcode: 0
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | exeerrordiag: 
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | exitcode: 0
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | exitmsg: OK
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | cpuconsumptiontime: 315010 s
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | nevents: 1000
[2025-12-01 02:52:16] 2025-12-01 01:51:06,194 | INFO     | neventsw: 0
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | pid: 8793
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | pgrp: 8793
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | corecount: 8
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | event service: False
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284360, 13: 2284360, 23: 2284416, 34: 2284444, 45: 2284600, 56: 2284628, 66: 2284656, 77: 2284684, 84: 2285002, 88: 2285310, 83
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | --------------------------------------------------
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | 
[2025-12-01 02:52:16] 2025-12-01 01:51:06,195 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-01 02:52:16] 2025-12-01 01:51:06,702 | INFO     | time since job start (84208s) is within the limit (172800.0s)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 02:52:16] 2025-12-01 01:51:06,761 | INFO     | job 6892527843 has completed (purged errors)
[2025-12-01 02:52:16] 2025-12-01 01:51:06,761 | INFO     | overall cleanup function is called
[2025-12-01 02:52:16] 2025-12-01 01:51:07,783 | INFO     | --- collectZombieJob: --- 10, [8793]
[2025-12-01 02:52:16] 2025-12-01 01:51:07,783 | INFO     | zombie collector waiting for pid 8793
[2025-12-01 02:52:16] 2025-12-01 01:51:07,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 02:52:16] 2025-12-01 01:51:07,783 | INFO     | collected zombie processes
[2025-12-01 02:52:16] 2025-12-01 01:51:07,783 | INFO     | will attempt to kill all subprocesses of pid=8793
[2025-12-01 02:52:16] 2025-12-01 01:51:07,888 | INFO     | process IDs to be killed: [8793] (in reverse order)
[2025-12-01 02:52:16] 2025-12-01 01:51:08,459 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 02:52:16] 2025-12-01 01:51:08,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 02:52:16] 2025-12-01 01:51:08,463 | INFO     | did not find any defunct processes belonging to 8793
[2025-12-01 02:52:16] 2025-12-01 01:51:08,465 | INFO     | did not find any defunct processes belonging to 8793
[2025-12-01 02:52:16] 2025-12-01 01:51:08,514 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 02:52:16] 2025-12-01 01:51:08,514 | INFO     | ready for new job
[2025-12-01 02:52:16] 2025-12-01 01:51:08,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 02:52:16] 2025-12-01 01:51:08,519 | INFO     | ***************************************
[2025-12-01 02:52:16] 2025-12-01 01:51:08,519 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 02:52:16] 2025-12-01 01:51:08,520 | INFO     | ***************************************
[2025-12-01 02:52:16] 2025-12-01 01:51:08,520 | INFO     | 
[2025-12-01 02:52:16] 2025-12-01 01:51:08,520 | INFO     | pilot is running in a VM
[2025-12-01 02:52:16] 2025-12-01 01:51:08,520 | INFO     | architecture information:
[2025-12-01 02:52:16] 2025-12-01 01:51:08,533 | INFO     | executing command: cat /etc/os-release
[2025-12-01 02:52:16] 2025-12-01 01:51:08,862 | INFO     | cat /etc/os-release:
[2025-12-01 02:52:16] NAME="CentOS Linux"
[2025-12-01 02:52:16] VERSION="7 (Core)"
[2025-12-01 02:52:16] ID="centos"
[2025-12-01 02:52:16] ID_LIKE="rhel fedora"
[2025-12-01 02:52:16] VERSION_ID="7"
[2025-12-01 02:52:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 02:52:16] ANSI_COLOR="0;31"
[2025-12-01 02:52:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 02:52:16] HOME_URL="https://www.centos.org/"
[2025-12-01 02:52:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 02:52:16] 
[2025-12-01 02:52:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 02:52:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 02:52:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 02:52:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 02:52:16] 
[2025-12-01 02:52:16] 2025-12-01 01:51:08,862 | INFO     | ***************************************
[2025-12-01 02:52:16] 2025-12-01 01:51:09,366 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-01 02:52:16] 2025-12-01 01:51:09,583 | INFO     | sufficient remaining disk space (487993638912 B)
[2025-12-01 02:52:16] 2025-12-01 01:51:09,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 02:52:16] 2025-12-01 01:51:09,583 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 02:52:16] 2025-12-01 01:51:09,583 | INFO     | update_server=False
[2025-12-01 02:52:16] 2025-12-01 01:51:09,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 02:52:16] 2025-12-01 01:51:09,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 02:52:16] 2025-12-01 01:51:09,999 | INFO     | aborting loop
[2025-12-01 02:52:16] 2025-12-01 01:51:10,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 02:52:16] 2025-12-01 01:51:10,433 | INFO     | all payload control threads have been joined
[2025-12-01 02:52:16] 2025-12-01 01:51:10,484 | INFO     | all data control threads have been joined
[2025-12-01 02:52:16] 2025-12-01 01:51:10,590 | INFO     | [job] retrieve thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:10,691 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,005 | INFO     | [job] job monitor thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,125 | INFO     | all job control threads have been joined
[2025-12-01 02:52:16] 2025-12-01 01:51:11,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 02:52:16] 2025-12-01 01:51:11,170 | INFO     | [payload] validate_post thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 02:52:16] 2025-12-01 01:51:11,439 | INFO     | [payload] control thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,490 | INFO     | [data] copytool_in thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,490 | INFO     | [data] control thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,503 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,690 | INFO     | [payload] failed_post thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:11,926 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:12,018 | INFO     | [job] validate thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:12,131 | INFO     | [job] control thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:12,213 | INFO     | [job] queue monitor thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:12,422 | INFO     | [data] copytool_out thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:15,174 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 02:52:16] 2025-12-01 01:51:39,886 | INFO     | PID=2203 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 02:52:16] 2025-12-01 01:51:39,887 | INFO     | .. there are 9 such processes running
[2025-12-01 02:52:16] 2025-12-01 01:51:39,887 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 02:52:16] 2025-12-01 01:51:39,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 02:52:16] 2025-12-01 01:51:39,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 02:52:16] 2025-12-01 01:52:05,477 | INFO     | [monitor] cgroup control has ended
[2025-12-01 02:52:16] 2025-12-01 01:52:06,503 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016453674816)>', '<ExcThread(monitor, started 140015791236864)>']
[2025-12-01 02:52:16] 2025-12-01 01:52:07,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 02:52:16] 2025-12-01 01:52:07,046 | INFO     | [monitor] control thread has ended
[2025-12-01 02:52:16] 2025-12-01 01:52:11,529 | INFO     | all workflow threads have been joined
[2025-12-01 02:52:16] 2025-12-01 01:52:11,529 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 02:52:16] 2025-12-01 01:52:11,529 | INFO     | traces error code: 0
[2025-12-01 02:52:16] 2025-12-01 01:52:11,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 02:52:16] 2025-12-01 01:52:11,785 [wrapper] ==== pilot stdout END ====
[2025-12-01 02:52:16] 2025-12-01 01:52:11,877 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 02:52:16] 2025-12-01 01:52:11,936 [wrapper] pilotpid: 2203
[2025-12-01 02:52:16] 2025-12-01 01:52:12,025 [wrapper] Pilot exit status: 0
[2025-12-01 02:52:16] 2025-12-01 01:52:12,335 [wrapper] pandaids: 6892527843
[2025-12-01 02:52:16] 2025-12-01 01:52:13,124 [wrapper] cleanup supervisor_pilot 16317 2204
[2025-12-01 02:52:16] 2025-12-01 01:52:13,225 [wrapper] Test setup, not cleaning
[2025-12-01 02:52:16] 2025-12-01 01:52:13,314 [wrapper] apfmon messages muted
[2025-12-01 02:52:16] 2025-12-01 01:52:13,399 [wrapper] ==== wrapper stdout END ====
[2025-12-01 02:52:16] 2025-12-01 01:52:13,492 [wrapper] ==== wrapper stderr END ====
[2025-12-01 02:52:16]  *** Error codes and diagnostics ***
[2025-12-01 02:52:16]     "exeErrorCode": 0,
[2025-12-01 02:52:16]     "exeErrorDiag": "",
[2025-12-01 02:52:16]     "pilotErrorCode": 0,
[2025-12-01 02:52:16]     "pilotErrorDiag": "",
[2025-12-01 02:52:16]  *** Listing of results directory ***
[2025-12-01 02:52:16] total 1310540
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-12-01 02:52:16] -rwx------. 1 boinc boinc     36292 Nov 19 08:11 runpilot2-wrapper.sh
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc       100 Nov 30 03:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 02:52:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 03:23 run_atlas
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc       105 Nov 30 03:23 job.xml
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc 407314923 Nov 30 03:23 EVNT.47493027._000141.pool.root.1
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc     15120 Nov 30 03:23 start_atlas.sh
[2025-12-01 02:52:16] drwxrwx--x. 2 boinc boinc        68 Nov 30 03:23 shared
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc    590094 Nov 30 03:23 input.tar.gz
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc      6391 Nov 30 03:23 init_data.xml
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc         0 Nov 30 03:23 boinc_lockfile
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc      2773 Nov 30 03:23 pandaJob.out
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc    991772 Nov 30 03:27 agis_schedconf.cvmfs.json
[2025-12-01 02:52:16] drwx------. 5 boinc boinc      4096 Nov 30 03:27 pilot3
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc       533 Dec  1 02:29 boinc_task_state.xml
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc 903466617 Dec  1 02:48 HITS.47493029._001367.pool.root.1
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc      1035 Dec  1 02:49 memory_monitor_summary.json
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc   1516240 Dec  1 02:49 agis_ddmendpoints.agis.ALL.json
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc   2456924 Dec  1 02:49 log.47493029._001367.job.log.tgz.1
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc        95 Dec  1 02:51 pilot_heartbeat.json
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc      8627 Dec  1 02:51 heartbeat.json
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc        29 Dec  1 02:52 wrapper_checkpoint.txt
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc      8192 Dec  1 02:52 boinc_mmap_file
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc      4883 Dec  1 02:52 pilotlog.txt
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc  11195314 Dec  1 02:52 log.47493029._001367.job.log.1
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc       353 Dec  1 02:52 output.list
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc       620 Dec  1 02:52 runtime_log
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc  13670400 Dec  1 02:52 result.tar.gz
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc       662 Dec  1 02:52 uJ0KDmHXrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7kGKDmnpzWUo.diag
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc      8703 Dec  1 02:52 runtime_log.err
[2025-12-01 02:52:16] -rw-r--r--. 1 boinc boinc     21288 Dec  1 02:52 stderr.txt
[2025-12-01 02:52:16] HITS file was successfully produced:
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc 903466617 Dec  1 02:48 shared/HITS.pool.root.1
[2025-12-01 02:52:16]  *** Contents of shared directory: ***
[2025-12-01 02:52:16] total 1294012
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc 407314923 Nov 30 03:23 ATLAS.root_0
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc     15120 Nov 30 03:23 start_atlas.sh
[2025-12-01 02:52:16] -rw-r--r--. 2 boinc boinc    590094 Nov 30 03:23 input.tar.gz
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc 903466617 Dec  1 02:48 HITS.pool.root.1
[2025-12-01 02:52:16] -rw-------. 1 boinc boinc  13670400 Dec  1 02:52 result.tar.gz
02:52:17 (30739): run_atlas exited; CPU time 315610.237704
02:52:17 (30739): called boinc_finish(0)

</stderr_txt>
]]>

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