Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:06:02 (1037575): wrapper (7.7.26015): starting
05:06:02 (1037575): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 05:06:02] Arguments: --nthreads 3
[2025-11-28 05:06:02] Threads: 3
[2025-11-28 05:06:02] Checking for CVMFS
[2025-11-28 05:06:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 05:06:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 05:06:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 05:06:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 05:06:02] 2.9.2.0 995440 16 48972 153395 3 88 36190360 36864001 0 130560 0 125220 100.000 2 222 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 05:06:02] CVMFS is ok
[2025-11-28 05:06:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 05:06:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 05:06:02] Further information can be found at the LHC@home message board.
[2025-11-28 05:06:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 05:06:02] Checking for apptainer binary...
[2025-11-28 05:06:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 05:06:02] Running /usr/bin/apptainer --version
[2025-11-28 05:06:02] apptainer version 1.4.1-1.1
[2025-11-28 05:06:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 05:06:02] thA335
[2025-11-28 05:06:02] apptainer works
[2025-11-28 05:06:02] Set ATHENA_PROC_NUMBER=3
[2025-11-28 05:06:02] Set ATHENA_CORE_NUMBER=3
[2025-11-28 05:06:02] Starting ATLAS job with PandaID=6898721173
[2025-11-28 05:06:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:10:18]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:10:18] 
[2025-11-28 05:10:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:10:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:10:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:10:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:10:18] 
[2025-11-28 05:10:18] 2025-11-28 04:09:25,514 | INFO     | ***************************************
[2025-11-28 05:10:18] 2025-11-28 04:09:26,017 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | INFO     | sufficient remaining disk space (826222313472 B)
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | INFO     | update_server=False
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:10:18] 2025-11-28 04:09:26,031 | INFO     | aborting loop
[2025-11-28 05:10:18] 2025-11-28 04:09:26,045 | INFO     | all data control threads have been joined
[2025-11-28 05:10:18] 2025-11-28 04:09:26,308 | INFO     | all job control threads have been joined
[2025-11-28 05:10:18] 2025-11-28 04:09:26,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:10:18] 2025-11-28 04:09:27,037 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,037 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,047 | INFO     | [data] control thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,070 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,247 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,315 | INFO     | [job] control thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,469 | INFO     | all payload control threads have been joined
[2025-11-28 05:10:18] 2025-11-28 04:09:27,660 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:27,808 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,060 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,379 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,433 | INFO     | [job] validate thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,475 | INFO     | [payload] control thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,519 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:28,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:10:18] 2025-11-28 04:09:28,976 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:29,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:10:18] 2025-11-28 04:09:29,937 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:33,160 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:10:18] 2025-11-28 04:09:56,558 | INFO     | PID=1041308 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:10:18] 2025-11-28 04:09:56,558 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:10:18] 2025-11-28 04:09:56,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:10:18] 2025-11-28 04:09:56,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:10:18] 2025-11-28 04:10:11,747 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:10:18] 2025-11-28 04:10:12,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178589611840)>', '<ExcThread(monitor, started 140178219833088)>']
[2025-11-28 05:10:18] 2025-11-28 04:10:13,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:10:18] 2025-11-28 04:10:13,649 | INFO     | [monitor] control thread has ended
[2025-11-28 05:10:18] 2025-11-28 04:10:17,817 | INFO     | all workflow threads have been joined
[2025-11-28 05:10:18] 2025-11-28 04:10:17,818 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:10:18] 2025-11-28 04:10:17,818 | INFO     | traces error code: 0
[2025-11-28 05:10:18] 2025-11-28 04:10:17,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:10:18] 2025-11-28 04:10:17,862 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:10:18] 2025-11-28 04:10:17,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:10:18] 2025-11-28 04:10:17,868 [wrapper] pilotpid: 1041308
[2025-11-28 05:10:18] 2025-11-28 04:10:17,870 [wrapper] Pilot exit status: 0
[2025-11-28 05:10:18] 2025-11-28 04:10:17,877 [wrapper] pandaids: 6898721173
[2025-11-28 05:10:18] 2025-11-28 04:10:17,894 [wrapper] cleanup supervisor_pilot 1041314 1041309
[2025-11-28 05:10:18] 2025-11-28 04:10:17,897 [wrapper] Test setup, not cleaning
[2025-11-28 05:10:18] 2025-11-28 04:10:17,900 [wrapper] apfmon messages muted
[2025-11-28 05:10:18] 2025-11-28 04:10:17,902 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:10:18] 2025-11-28 04:10:17,905 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:10:18]  *** Error codes and diagnostics ***
[2025-11-28 05:10:18]     "exeErrorCode": 65,
[2025-11-28 05:10:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 05:10:18]     "pilotErrorCode": 1305,
[2025-11-28 05:10:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 05:10:18]  *** Listing of results directory ***
[2025-11-28 05:10:18] total 403572
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc    576529 Nov 26 23:16 pilot3.tar.gz
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      5112 Nov 26 23:23 queuedata.json
[2025-11-28 05:10:18] -rwx------ 1 boinc boinc     36292 Nov 26 23:24 runpilot2-wrapper.sh
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc       100 Nov 28 05:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:10:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 05:06 run_atlas
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc       105 Nov 28 05:06 job.xml
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc 409074970 Nov 28 05:06 EVNT.47483658._002701.pool.root.1
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc    590107 Nov 28 05:06 input.tar.gz
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:06 start_atlas.sh
[2025-11-28 05:10:18] drwxrwx--x 2 boinc boinc      4096 Nov 28 05:06 shared
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:06 boinc_setup_complete
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      6196 Nov 28 05:06 init_data.xml
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:06 boinc_lockfile
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      2785 Nov 28 05:06 pandaJob.out
[2025-11-28 05:10:18] -rw------- 1 boinc boinc    991850 Nov 28 05:06 agis_schedconf.cvmfs.json
[2025-11-28 05:10:18] -rw------- 1 boinc boinc   1516240 Nov 28 05:06 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:10:18] drwx------ 5 boinc boinc      4096 Nov 28 05:06 pilot3
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc       522 Nov 28 05:07 boinc_task_state.xml
[2025-11-28 05:10:18] -rw------- 1 boinc boinc       953 Nov 28 05:07 memory_monitor_summary.json
[2025-11-28 05:10:18] -rw------- 1 boinc boinc     55838 Nov 28 05:07 log.47556161._006834.job.log.tgz.1
[2025-11-28 05:10:18] -rw------- 1 boinc boinc        95 Nov 28 05:09 pilot_heartbeat.json
[2025-11-28 05:10:18] -rw------- 1 boinc boinc      8392 Nov 28 05:09 heartbeat.json
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:10 boinc_mmap_file
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc        22 Nov 28 05:10 wrapper_checkpoint.txt
[2025-11-28 05:10:18] -rw------- 1 boinc boinc      4752 Nov 28 05:10 pilotlog.txt
[2025-11-28 05:10:18] -rw------- 1 boinc boinc     93041 Nov 28 05:10 log.47556161._006834.job.log.1
[2025-11-28 05:10:18] -rw------- 1 boinc boinc       186 Nov 28 05:10 output.list
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:10 runtime_log
[2025-11-28 05:10:18] -rw------- 1 boinc boinc    163840 Nov 28 05:10 result.tar.gz
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      8744 Nov 28 05:10 runtime_log.err
[2025-11-28 05:10:18] -rw------- 1 boinc boinc       649 Nov 28 05:10 8LILDmc7ci8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiLNKDm8cxJEn.diag
[2025-11-28 05:10:18] -rw-r--r-- 1 boinc boinc      8601 Nov 28 05:10 stderr.txt
[2025-11-28 05:10:18] No HITS result produced
[2025-11-28 05:10:18]  *** Contents of shared directory: ***
[2025-11-28 05:10:18] total 400244
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc 409074970 Nov 28 05:06 ATLAS.root_0
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc    590107 Nov 28 05:06 input.tar.gz
[2025-11-28 05:10:18] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:06 start_atlas.sh
[2025-11-28 05:10:18] -rw------- 1 boinc boinc    163840 Nov 28 05:10 result.tar.gz
05:10:20 (1037575): run_atlas exited; CPU time 31.703132
05:10:20 (1037575): called boinc_finish(0)

</stderr_txt>
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