Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:00 (466083): wrapper (7.7.26015): starting
00:01:00 (466083): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 00:01:00] Arguments: --nthreads 12
[2025-11-28 00:01:00] Threads: 12
[2025-11-28 00:01:00] Checking for CVMFS
[2025-11-28 00:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:01:02] 2.13.2.0 9514 38161 481300 153397 1 628 34303990 40960001 23408 16776704 0 106535661 99.579 110390182 35360 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:01:02] CVMFS is ok
[2025-11-28 00:01:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:01:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:01:02] Further information can be found at the LHC@home message board.
[2025-11-28 00:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:01:02] Checking for apptainer binary...
[2025-11-28 00:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:01:02] Running /usr/bin/apptainer --version
[2025-11-28 00:01:02] apptainer version 1.4.4-1.el9
[2025-11-28 00:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:01:03] c-211-33-3.aglt2.org
[2025-11-28 00:01:03] apptainer works
[2025-11-28 00:01:03] Set ATHENA_PROC_NUMBER=12
[2025-11-28 00:01:03] Set ATHENA_CORE_NUMBER=12
[2025-11-28 00:01:03] Starting ATLAS job with PandaID=6898719696
[2025-11-28 00:01:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 14:30:53]  *** The last 200 lines of the pilot log: ***
[2025-11-28 14:30:53] 2025-11-28 19:30:15,939 | INFO     | fitting pss+swap vs Time
[2025-11-28 14:30:53] 2025-11-28 19:30:15,941 | INFO     | sum of square deviations: 191072788247.01346
[2025-11-28 14:30:53] 2025-11-28 19:30:15,956 | INFO     | sum of deviations: 3081305445696.536
[2025-11-28 14:30:53] 2025-11-28 19:30:15,956 | INFO     | mean x: 1764332210.7943597
[2025-11-28 14:30:53] 2025-11-28 19:30:15,956 | INFO     | mean y: 3436735.6545240893
[2025-11-28 14:30:53] 2025-11-28 19:30:15,957 | INFO     | intersect: -28448790810.79435
[2025-11-28 14:30:53] 2025-11-28 19:30:15,958 | INFO     | chi2: 9.92307088497907
[2025-11-28 14:30:53] 2025-11-28 19:30:15,959 | INFO     | sum of square deviations: 187725086977.1012
[2025-11-28 14:30:53] 2025-11-28 19:30:15,974 | INFO     | sum of deviations: 3410681722683.2207
[2025-11-28 14:30:53] 2025-11-28 19:30:15,974 | INFO     | mean x: 1764332058.3167849
[2025-11-28 14:30:53] 2025-11-28 19:30:15,974 | INFO     | mean y: 3451737.9208037825
[2025-11-28 14:30:53] 2025-11-28 19:30:15,974 | INFO     | intersect: -32051800977.3391
[2025-11-28 14:30:53] 2025-11-28 19:30:15,975 | INFO     | chi2: 6.979783898913427
[2025-11-28 14:30:53] 2025-11-28 19:30:15,976 | INFO     | current chi2=6.979783898913427 (change=29.661049690988396 %)
[2025-11-28 14:30:53] 2025-11-28 19:30:15,977 | INFO     | sum of square deviations: 184416581091.35565
[2025-11-28 14:30:53] 2025-11-28 19:30:15,991 | INFO     | sum of deviations: 3506391153326.744
[2025-11-28 14:30:53] 2025-11-28 19:30:15,992 | INFO     | mean x: 1764331905.8359096
[2025-11-28 14:30:53] 2025-11-28 19:30:15,992 | INFO     | mean y: 3456137.0416171225
[2025-11-28 14:30:53] 2025-11-28 19:30:15,992 | INFO     | intersect: -33542539291.051323
[2025-11-28 14:30:53] 2025-11-28 19:30:15,993 | INFO     | chi2: 6.4146171867383455
[2025-11-28 14:30:53] 2025-11-28 19:30:15,993 | INFO     | current chi2=6.4146171867383455 (change=8.097194989991928 %)
[2025-11-28 14:30:53] 2025-11-28 19:30:15,993 | INFO     | right removable region: 840
[2025-11-28 14:30:53] 2025-11-28 19:30:15,994 | INFO     | sum of square deviations: 187723117287.10144
[2025-11-28 14:30:53] 2025-11-28 19:30:16,009 | INFO     | sum of deviations: 2669154042178.666
[2025-11-28 14:30:53] 2025-11-28 19:30:16,010 | INFO     | mean x: 1764332363.3167849
[2025-11-28 14:30:53] 2025-11-28 19:30:16,010 | INFO     | mean y: 3455499.8333333335
[2025-11-28 14:30:53] 2025-11-28 19:30:16,010 | INFO     | intersect: -25082825440.68252
[2025-11-28 14:30:53] 2025-11-28 19:30:16,011 | INFO     | chi2: 5.654059589883368
[2025-11-28 14:30:53] 2025-11-28 19:30:16,011 | INFO     | current chi2=5.654059589883368 (change=43.021070237015714 %)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,012 | INFO     | sum of square deviations: 184412847270.0074
[2025-11-28 14:30:53] 2025-11-28 19:30:16,027 | INFO     | sum of deviations: 2392557542581.867
[2025-11-28 14:30:53] 2025-11-28 19:30:16,027 | INFO     | mean x: 1764332515.8382878
[2025-11-28 14:30:53] 2025-11-28 19:30:16,028 | INFO     | mean y: 3468231.7122473246
[2025-11-28 14:30:53] 2025-11-28 19:30:16,028 | INFO     | intersect: -22886840826.911987
[2025-11-28 14:30:53] 2025-11-28 19:30:16,029 | INFO     | chi2: 3.7777294428869292
[2025-11-28 14:30:53] 2025-11-28 19:30:16,029 | INFO     | current chi2=3.7777294428869292 (change=33.18553894185512 %)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,030 | INFO     | sum of square deviations: 181142515509.84134
[2025-11-28 14:30:53] 2025-11-28 19:30:16,045 | INFO     | sum of deviations: 2296013723453.93
[2025-11-28 14:30:53] 2025-11-28 19:30:16,045 | INFO     | mean x: 1764332668.340909
[2025-11-28 14:30:53] 2025-11-28 19:30:16,045 | INFO     | mean y: 3472732.8528708136
[2025-11-28 14:30:53] 2025-11-28 19:30:16,045 | INFO     | intersect: -22359758824.61512
[2025-11-28 14:30:53] 2025-11-28 19:30:16,046 | INFO     | chi2: 3.6960033998329154
[2025-11-28 14:30:53] 2025-11-28 19:30:16,046 | INFO     | current chi2=3.6960033998329154 (change=2.1633641130096146 %)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,047 | INFO     | left removable region: 30
[2025-11-28 14:30:53] 2025-11-28 19:30:16,048 | INFO     | sum of square deviations: 164760870686.27615
[2025-11-28 14:30:53] 2025-11-28 19:30:16,061 | INFO     | sum of deviations: 2506121291283.935
[2025-11-28 14:30:53] 2025-11-28 19:30:16,062 | INFO     | mean x: 1764332790.3876543
[2025-11-28 14:30:53] 2025-11-28 19:30:16,062 | INFO     | mean y: 3502605.4938271604
[2025-11-28 14:30:53] 2025-11-28 19:30:16,062 | INFO     | intersect: -26833160447.350784
[2025-11-28 14:30:53] 2025-11-28 19:30:16,063 | INFO     | chi2: 0.0490743629305068
[2025-11-28 14:30:53] 2025-11-28 19:30:16,063 | INFO     | current memory leak: 15.21 B/s (using 810 data points, chi2=0.05)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,064 | INFO     | could have reported an average CPU frequency of 2589 MHz (32 samples)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | ..............................
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . Timing measurements:
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . get job = 0 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . initial setup = 4 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . payload setup = 50 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . stage-in = 0 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . payload execution = 51927 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . stage-out = 5 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | . log creation = 1 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,065 | INFO     | ..............................
[2025-11-28 14:30:53] 2025-11-28 19:30:16,528 | INFO     | 
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | job summary report
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | --------------------------------------------------
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | PanDA job id: 6898719696
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | task id: 47556173
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | errors: (none)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | pilot state: finished 
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | transexitcode: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | exeerrorcode: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:16,529 | INFO     | exeerrordiag: 
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | exitcode: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | exitmsg: OK
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | cpuconsumptiontime: 255549 s
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | nevents: 1000
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | neventsw: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | pid: 489146
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | pgrp: 489146
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | corecount: 12
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | event service: False
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284343, 13: 2284371, 24: 2284427, 35: 2284873, 46: 2284873, 51982: 2333602, 51989: 2342596, 51992: 2342680, 52015: 2342926}
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | --------------------------------------------------
[2025-11-28 14:30:53] 2025-11-28 19:30:16,530 | INFO     | 
[2025-11-28 14:30:53] 2025-11-28 19:30:16,531 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-28 14:30:53] 2025-11-28 19:30:16,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,575 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,576 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,576 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 14:30:53] 2025-11-28 19:30:16,576 | INFO     | job 6898719696 has completed (purged errors)
[2025-11-28 14:30:53] 2025-11-28 19:30:16,576 | INFO     | overall cleanup function is called
[2025-11-28 14:30:53] 2025-11-28 19:30:17,132 | INFO     | PID=472095 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 14:30:53] 2025-11-28 19:30:17,132 | INFO     | .. there are 25 such processes running
[2025-11-28 14:30:53] 2025-11-28 19:30:17,772 | INFO     | --- collectZombieJob: --- 10, [489146]
[2025-11-28 14:30:53] 2025-11-28 19:30:17,773 | INFO     | zombie collector waiting for pid 489146
[2025-11-28 14:30:53] 2025-11-28 19:30:17,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 14:30:53] 2025-11-28 19:30:17,773 | INFO     | collected zombie processes
[2025-11-28 14:30:53] 2025-11-28 19:30:17,773 | INFO     | will attempt to kill all subprocesses of pid=489146
[2025-11-28 14:30:53] 2025-11-28 19:30:18,688 | INFO     | process IDs to be killed: [489146] (in reverse order)
[2025-11-28 14:30:53] 2025-11-28 19:30:18,861 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 14:30:53] 2025-11-28 19:30:18,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 14:30:53] 2025-11-28 19:30:18,896 | INFO     | did not find any defunct processes belonging to 489146
[2025-11-28 14:30:53] 2025-11-28 19:30:18,928 | INFO     | did not find any defunct processes belonging to 489146
[2025-11-28 14:30:53] 2025-11-28 19:30:18,929 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 14:30:53] 2025-11-28 19:30:18,929 | INFO     | ready for new job
[2025-11-28 14:30:53] 2025-11-28 19:30:18,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 14:30:53] 2025-11-28 19:30:18,938 | INFO     | ***************************************
[2025-11-28 14:30:53] 2025-11-28 19:30:18,939 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 14:30:53] 2025-11-28 19:30:18,939 | INFO     | ***************************************
[2025-11-28 14:30:53] 2025-11-28 19:30:18,939 | INFO     | 
[2025-11-28 14:30:53] 2025-11-28 19:30:18,953 | INFO     | architecture information:
[2025-11-28 14:30:53] 2025-11-28 19:30:18,954 | INFO     | executing command: cat /etc/os-release
[2025-11-28 14:30:53] 2025-11-28 19:30:18,995 | INFO     | cat /etc/os-release:
[2025-11-28 14:30:53] NAME="CentOS Linux"
[2025-11-28 14:30:53] VERSION="7 (Core)"
[2025-11-28 14:30:53] ID="centos"
[2025-11-28 14:30:53] ID_LIKE="rhel fedora"
[2025-11-28 14:30:53] VERSION_ID="7"
[2025-11-28 14:30:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 14:30:53] ANSI_COLOR="0;31"
[2025-11-28 14:30:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 14:30:53] HOME_URL="https://www.centos.org/"
[2025-11-28 14:30:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 14:30:53] 
[2025-11-28 14:30:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 14:30:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 14:30:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 14:30:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 14:30:53] 
[2025-11-28 14:30:53] 2025-11-28 19:30:18,995 | INFO     | ***************************************
[2025-11-28 14:30:53] 2025-11-28 19:30:19,506 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-28 14:30:53] 2025-11-28 19:30:19,695 | INFO     | sufficient remaining disk space (121791053824 B)
[2025-11-28 14:30:53] 2025-11-28 19:30:19,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 14:30:53] 2025-11-28 19:30:19,695 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 14:30:53] 2025-11-28 19:30:19,695 | INFO     | update_server=False
[2025-11-28 14:30:53] 2025-11-28 19:30:19,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 14:30:53] 2025-11-28 19:30:19,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:30:53] 2025-11-28 19:30:19,696 | INFO     | aborting loop
[2025-11-28 14:30:53] 2025-11-28 19:30:19,791 | INFO     | all data control threads have been joined
[2025-11-28 14:30:53] 2025-11-28 19:30:20,636 | INFO     | all job control threads have been joined
[2025-11-28 14:30:53] 2025-11-28 19:30:20,702 | INFO     | [job] retrieve thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:20,702 | INFO     | [job] job monitor thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:20,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 14:30:53] 2025-11-28 19:30:20,797 | INFO     | [data] control thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:20,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:20,925 | INFO     | all payload control threads have been joined
[2025-11-28 14:30:53] 2025-11-28 19:30:21,105 | INFO     | [data] copytool_in thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,214 | INFO     | [payload] failed_post thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,249 | INFO     | [payload] validate_post thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:30:53] 2025-11-28 19:30:21,368 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,632 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,642 | INFO     | [job] control thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,687 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:21,931 | INFO     | [payload] control thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:22,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 14:30:53] 2025-11-28 19:30:22,152 | INFO     | [job] validate thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:22,274 | INFO     | [job] queue monitor thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:22,728 | INFO     | [data] copytool_out thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:26,147 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 14:30:53] 2025-11-28 19:30:37,141 | INFO     | [monitor] cgroup control has ended
[2025-11-28 14:30:53] 2025-11-28 19:30:38,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939311052608)>', '<ExcThread(monitor, started 139938649581312)>']
[2025-11-28 14:30:53] 2025-11-28 19:30:43,611 | INFO     | all workflow threads have been joined
[2025-11-28 14:30:53] 2025-11-28 19:30:43,612 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 14:30:53] 2025-11-28 19:30:43,612 | INFO     | traces error code: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:43,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 14:30:53] 2025-11-28 19:30:50,943 | INFO     | PID=472095 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 14:30:53] 2025-11-28 19:30:50,945 | INFO     | .. there are 25 such processes running
[2025-11-28 14:30:53] 2025-11-28 19:30:50,946 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 14:30:53] 2025-11-28 19:30:50,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 14:30:53] 2025-11-28 19:30:50,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 14:30:53] 2025-11-28 19:30:50,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 14:30:53] 2025-11-28 19:30:50,946 | INFO     | [monitor] control thread has ended
[2025-11-28 14:30:53] 2025-11-28 19:30:51,939 [wrapper] ==== pilot stdout END ====
[2025-11-28 14:30:53] 2025-11-28 19:30:51,957 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 14:30:53] 2025-11-28 19:30:51,976 [wrapper] pilotpid: 472095
[2025-11-28 14:30:53] 2025-11-28 19:30:51,990 [wrapper] Pilot exit status: 0
[2025-11-28 14:30:53] 2025-11-28 19:30:52,089 [wrapper] pandaids: 6898719696
[2025-11-28 14:30:53] 2025-11-28 19:30:52,938 [wrapper] cleanup supervisor_pilot 2499264 472096
[2025-11-28 14:30:53] 2025-11-28 19:30:52,979 [wrapper] Test setup, not cleaning
[2025-11-28 14:30:53] 2025-11-28 19:30:53,002 [wrapper] apfmon messages muted
[2025-11-28 14:30:53] 2025-11-28 19:30:53,022 [wrapper] ==== wrapper stdout END ====
[2025-11-28 14:30:53] 2025-11-28 19:30:53,064 [wrapper] ==== wrapper stderr END ====
[2025-11-28 14:30:53]  *** Error codes and diagnostics ***
[2025-11-28 14:30:53]     "exeErrorCode": 0,
[2025-11-28 14:30:53]     "exeErrorDiag": "",
[2025-11-28 14:30:53]     "pilotErrorCode": 0,
[2025-11-28 14:30:53]     "pilotErrorDiag": "",
[2025-11-28 14:30:53]  *** Listing of results directory ***
[2025-11-28 14:30:53] total 1314260
[2025-11-28 14:30:53] -rwx------. 1 boincer umatlas     36292 Nov 26 17:01 runpilot2-wrapper.sh
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 17:01 queuedata.json
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 17:01 pilot3.tar.gz
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas       100 Nov 28 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 14:30:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 28 00:00 run_atlas
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas       105 Nov 28 00:00 job.xml
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas 406183249 Nov 28 00:01 EVNT.47483658._003228.pool.root.1
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:01 start_atlas.sh
[2025-11-28 14:30:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 28 00:01 shared
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:01 input.tar.gz
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas         0 Nov 28 00:01 boinc_lockfile
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas      2786 Nov 28 00:01 pandaJob.out
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas        57 Nov 28 00:01 setup.sh.local
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas    991858 Nov 28 00:02 agis_schedconf.cvmfs.json
[2025-11-28 14:30:53] drwx------. 5 boincer umatlas      4096 Nov 28 00:02 pilot3
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas       533 Nov 28 14:18 boinc_task_state.xml
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas      6880 Nov 28 14:27 init_data.xml
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas 917529802 Nov 28 14:28 HITS.47556173._001846.pool.root.1
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas      1058 Nov 28 14:29 memory_monitor_summary.json
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas   1516240 Nov 28 14:29 agis_ddmendpoints.agis.ALL.json
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas   2488805 Nov 28 14:29 log.47556173._001846.job.log.tgz.1
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas      8642 Nov 28 14:30 heartbeat.json
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas        95 Nov 28 14:30 pilot_heartbeat.json
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas       822 Nov 28 14:30 pilotlog.txt
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 14:30 boinc_mmap_file
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas        29 Nov 28 14:30 wrapper_checkpoint.txt
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas   6595208 Nov 28 14:30 log.47556173._001846.job.log.1
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas       353 Nov 28 14:30 output.list
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas       620 Nov 28 14:30 runtime_log
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas   9103360 Nov 28 14:30 result.tar.gz
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas       662 Nov 28 14:30 wc5MDmckci8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTFKKDma7RpWn.diag
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas      9355 Nov 28 14:30 runtime_log.err
[2025-11-28 14:30:53] -rw-r--r--. 1 boincer umatlas     21287 Nov 28 14:30 stderr.txt
[2025-11-28 14:30:53] HITS file was successfully produced:
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas 917529802 Nov 28 14:28 shared/HITS.pool.root.1
[2025-11-28 14:30:53]  *** Contents of shared directory: ***
[2025-11-28 14:30:53] total 1302188
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas 406183249 Nov 28 00:01 ATLAS.root_0
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 28 00:01 start_atlas.sh
[2025-11-28 14:30:53] -rw-r--r--. 2 boincer umatlas    590101 Nov 28 00:01 input.tar.gz
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas 917529802 Nov 28 14:28 HITS.pool.root.1
[2025-11-28 14:30:53] -rw-------. 1 boincer umatlas   9103360 Nov 28 14:30 result.tar.gz
14:30:55 (466083): run_atlas exited; CPU time 256861.730020
14:30:55 (466083): called boinc_finish(0)

</stderr_txt>
]]>

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