Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:53:57 (160302): wrapper (7.7.26015): starting
03:53:57 (160302): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 03:53:57] Arguments: --nthreads 3
[2025-11-28 03:53:57] Threads: 3
[2025-11-28 03:53:57] Checking for CVMFS
[2025-11-28 03:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 03:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 03:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 03:53:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 03:53:58] 2.9.2.0 3650771 5224 86836 153393 1 81 7663036 36864001 0 130560 2 1943830 99.979 201933 237 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 03:53:58] CVMFS is ok
[2025-11-28 03:53:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 03:53:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 03:53:58] Further information can be found at the LHC@home message board.
[2025-11-28 03:53:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 03:53:58] Checking for apptainer binary...
[2025-11-28 03:53:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 03:53:58] Running /usr/bin/apptainer --version
[2025-11-28 03:53:58] apptainer version 1.4.1-1.1
[2025-11-28 03:53:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 03:53:58] thA330a
[2025-11-28 03:53:58] apptainer works
[2025-11-28 03:53:58] Set ATHENA_PROC_NUMBER=3
[2025-11-28 03:53:58] Set ATHENA_CORE_NUMBER=3
[2025-11-28 03:53:58] Starting ATLAS job with PandaID=6891583879
[2025-11-28 03:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 11:47:42]  *** The last 200 lines of the pilot log: ***
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | job 6891583879 has completed (purged errors)
[2025-11-28 11:47:42] 2025-11-28 10:46:57,694 | INFO     | overall cleanup function is called
[2025-11-28 11:47:42] 2025-11-28 10:46:58,702 | INFO     | --- collectZombieJob: --- 10, [170465]
[2025-11-28 11:47:42] 2025-11-28 10:46:58,703 | INFO     | zombie collector waiting for pid 170465
[2025-11-28 11:47:42] 2025-11-28 10:46:58,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 11:47:42] 2025-11-28 10:46:58,703 | INFO     | collected zombie processes
[2025-11-28 11:47:42] 2025-11-28 10:46:58,703 | INFO     | will attempt to kill all subprocesses of pid=170465
[2025-11-28 11:47:42] 2025-11-28 10:46:58,751 | INFO     | process IDs to be killed: [170465] (in reverse order)
[2025-11-28 11:47:42] 2025-11-28 10:46:58,777 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 11:47:42] 2025-11-28 10:46:58,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 11:47:42] 2025-11-28 10:46:58,778 | INFO     | did not find any defunct processes belonging to 170465
[2025-11-28 11:47:42] 2025-11-28 10:46:58,779 | INFO     | did not find any defunct processes belonging to 170465
[2025-11-28 11:47:42] 2025-11-28 10:46:58,780 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 11:47:42] 2025-11-28 10:46:58,780 | INFO     | ready for new job
[2025-11-28 11:47:42] 2025-11-28 10:46:58,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 11:47:42] 2025-11-28 10:46:58,781 | INFO     | ***************************************
[2025-11-28 11:47:42] 2025-11-28 10:46:58,781 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 11:47:42] 2025-11-28 10:46:58,781 | INFO     | ***************************************
[2025-11-28 11:47:42] 2025-11-28 10:46:58,781 | INFO     | 
[2025-11-28 11:47:42] 2025-11-28 10:46:58,782 | INFO     | architecture information:
[2025-11-28 11:47:42] 2025-11-28 10:46:58,782 | INFO     | executing command: cat /etc/os-release
[2025-11-28 11:47:42] 2025-11-28 10:46:58,790 | INFO     | cat /etc/os-release:
[2025-11-28 11:47:42] NAME="CentOS Linux"
[2025-11-28 11:47:42] VERSION="7 (Core)"
[2025-11-28 11:47:42] ID="centos"
[2025-11-28 11:47:42] ID_LIKE="rhel fedora"
[2025-11-28 11:47:42] VERSION_ID="7"
[2025-11-28 11:47:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 11:47:42] ANSI_COLOR="0;31"
[2025-11-28 11:47:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 11:47:42] HOME_URL="https://www.centos.org/"
[2025-11-28 11:47:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 11:47:42] 
[2025-11-28 11:47:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 11:47:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 11:47:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 11:47:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 11:47:42] 
[2025-11-28 11:47:42] 2025-11-28 10:46:58,790 | INFO     | ***************************************
[2025-11-28 11:47:42] 2025-11-28 10:46:59,294 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | INFO     | sufficient remaining disk space (252543238144 B)
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | INFO     | update_server=False
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:47:42] 2025-11-28 10:46:59,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 11:47:42] 2025-11-28 10:46:59,675 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 11:47:42] 2025-11-28 10:46:59,675 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 11:47:42] 2025-11-28 10:46:59,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:47:42] 2025-11-28 10:46:59,675 | INFO     | will abort loop
[2025-11-28 11:47:42] 2025-11-28 10:46:59,830 | INFO     | all payload control threads have been joined
[2025-11-28 11:47:42] 2025-11-28 10:46:59,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 11:47:42] 2025-11-28 10:47:00,313 | INFO     | [job] retrieve thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,313 | INFO     | [job] queue monitor thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,358 | INFO     | all data control threads have been joined
[2025-11-28 11:47:42] 2025-11-28 10:47:00,400 | INFO     | [payload] failed_post thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,589 | INFO     | all job control threads have been joined
[2025-11-28 11:47:42] 2025-11-28 10:47:00,667 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,680 | INFO     | [job] job monitor thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,746 | INFO     | [data] copytool_in thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,836 | INFO     | [payload] control thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,871 | INFO     | [job] validate thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:00,879 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:01,124 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:01,313 | INFO     | [data] copytool_out thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:01,364 | INFO     | [data] control thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:01,401 | INFO     | [payload] validate_post thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:01,594 | INFO     | [job] control thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:03,875 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:09,528 | INFO     | job.realtimelogging is not enabled
[2025-11-28 11:47:42] 2025-11-28 10:47:10,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 11:47:42] 2025-11-28 10:47:29,061 | INFO     | PID=164020 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 11:47:42] 2025-11-28 10:47:29,062 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 11:47:42] 2025-11-28 10:47:29,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 11:47:42] 2025-11-28 10:47:29,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 11:47:42] 2025-11-28 10:47:35,752 | INFO     | [monitor] cgroup control has ended
[2025-11-28 11:47:42] 2025-11-28 10:47:37,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166807103296)>', '<ExcThread(monitor, started 140166316418816)>']
[2025-11-28 11:47:42] 2025-11-28 10:47:38,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 11:47:42] 2025-11-28 10:47:38,110 | INFO     | [monitor] control thread has ended
[2025-11-28 11:47:42] 2025-11-28 10:47:42,853 | INFO     | all workflow threads have been joined
[2025-11-28 11:47:42] 2025-11-28 10:47:42,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 11:47:42] 2025-11-28 10:47:42,854 | INFO     | traces error code: 0
[2025-11-28 11:47:42] 2025-11-28 10:47:42,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 11:47:42] 2025-11-28 10:47:42,905 [wrapper] ==== pilot stdout END ====
[2025-11-28 11:47:42] 2025-11-28 10:47:42,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 11:47:42] 2025-11-28 10:47:42,910 [wrapper] pilotpid: 164020
[2025-11-28 11:47:42] 2025-11-28 10:47:42,912 [wrapper] Pilot exit status: 0
[2025-11-28 11:47:42] 2025-11-28 10:47:42,920 [wrapper] pandaids: 6891583879
[2025-11-28 11:47:42] 2025-11-28 10:47:42,937 [wrapper] cleanup supervisor_pilot  220650 164021
[2025-11-28 11:47:42] 2025-11-28 10:47:42,940 [wrapper] Test setup, not cleaning
[2025-11-28 11:47:42] 2025-11-28 10:47:42,942 [wrapper] apfmon messages muted
[2025-11-28 11:47:42] 2025-11-28 10:47:42,944 [wrapper] ==== wrapper stdout END ====
[2025-11-28 11:47:42] 2025-11-28 10:47:42,947 [wrapper] ==== wrapper stderr END ====
[2025-11-28 11:47:42]  *** Error codes and diagnostics ***
[2025-11-28 11:47:42]     "exeErrorCode": 0,
[2025-11-28 11:47:42]     "exeErrorDiag": "",
[2025-11-28 11:47:42]     "pilotErrorCode": 0,
[2025-11-28 11:47:42]     "pilotErrorDiag": "",
[2025-11-28 11:47:42]  *** Listing of results directory ***
[2025-11-28 11:47:42] total 1318208
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-28 11:47:42] -rwx------ 1 boinc boinc     36292 Nov 18 18:15 runpilot2-wrapper.sh
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:15 queuedata.json
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc       100 Nov 28 03:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 11:47:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 03:53 run_atlas
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc       105 Nov 28 03:53 job.xml
[2025-11-28 11:47:42] -rw-r--r-- 2 boinc boinc 408745633 Nov 28 03:53 EVNT.47493065._000450.pool.root.1
[2025-11-28 11:47:42] -rw-r--r-- 2 boinc boinc    590095 Nov 28 03:53 input.tar.gz
[2025-11-28 11:47:42] -rw-r--r-- 2 boinc boinc     15120 Nov 28 03:53 start_atlas.sh
[2025-11-28 11:47:42] drwxrwx--x 2 boinc boinc      4096 Nov 28 03:53 shared
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc         0 Nov 28 03:53 boinc_setup_complete
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc      6441 Nov 28 03:53 init_data.xml
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc         0 Nov 28 03:53 boinc_lockfile
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc      2773 Nov 28 03:53 pandaJob.out
[2025-11-28 11:47:42] -rw------- 1 boinc boinc    991842 Nov 28 03:54 agis_schedconf.cvmfs.json
[2025-11-28 11:47:42] drwx------ 5 boinc boinc      4096 Nov 28 03:54 pilot3
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc       531 Nov 28 11:43 boinc_task_state.xml
[2025-11-28 11:47:42] -rw------- 1 boinc boinc 926889440 Nov 28 11:46 HITS.47493068._004493.pool.root.1
[2025-11-28 11:47:42] -rw------- 1 boinc boinc      1025 Nov 28 11:46 memory_monitor_summary.json
[2025-11-28 11:47:42] -rw------- 1 boinc boinc   1516240 Nov 28 11:46 agis_ddmendpoints.agis.ALL.json
[2025-11-28 11:47:42] -rw------- 1 boinc boinc   1161675 Nov 28 11:46 log.47493068._004493.job.log.tgz.1
[2025-11-28 11:47:42] -rw------- 1 boinc boinc      8567 Nov 28 11:46 heartbeat.json
[2025-11-28 11:47:42] -rw------- 1 boinc boinc        95 Nov 28 11:47 pilot_heartbeat.json
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc      8192 Nov 28 11:47 boinc_mmap_file
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc        28 Nov 28 11:47 wrapper_checkpoint.txt
[2025-11-28 11:47:42] -rw------- 1 boinc boinc      5009 Nov 28 11:47 pilotlog.txt
[2025-11-28 11:47:42] -rw------- 1 boinc boinc   3989112 Nov 28 11:47 log.47493068._004493.job.log.1
[2025-11-28 11:47:42] -rw------- 1 boinc boinc       353 Nov 28 11:47 output.list
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc       620 Nov 28 11:47 runtime_log
[2025-11-28 11:47:42] -rw------- 1 boinc boinc   5171200 Nov 28 11:47 result.tar.gz
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc      8783 Nov 28 11:47 runtime_log.err
[2025-11-28 11:47:42] -rw------- 1 boinc boinc       666 Nov 28 11:47 2FoKDm8Tef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpYFKDm0UtgXn.diag
[2025-11-28 11:47:42] -rw-r--r-- 1 boinc boinc     11749 Nov 28 11:47 stderr.txt
[2025-11-28 11:47:42] HITS file was successfully produced:
[2025-11-28 11:47:43] -rw------- 1 boinc boinc 926889440 Nov 28 11:46 shared/HITS.pool.root.1
[2025-11-28 11:47:43]  *** Contents of shared directory: ***
[2025-11-28 11:47:43] total 1309992
[2025-11-28 11:47:43] -rw-r--r-- 2 boinc boinc 408745633 Nov 28 03:53 ATLAS.root_0
[2025-11-28 11:47:43] -rw-r--r-- 2 boinc boinc    590095 Nov 28 03:53 input.tar.gz
[2025-11-28 11:47:43] -rw-r--r-- 2 boinc boinc     15120 Nov 28 03:53 start_atlas.sh
[2025-11-28 11:47:43] -rw------- 1 boinc boinc 926889440 Nov 28 11:46 HITS.pool.root.1
[2025-11-28 11:47:43] -rw------- 1 boinc boinc   5171200 Nov 28 11:47 result.tar.gz
11:48:05 (160302): run_atlas exited; CPU time 83768.927658
11:48:05 (160302): called boinc_finish(0)

</stderr_txt>
]]>

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