Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:49:12 (995315): wrapper (7.7.26015): starting
04:49:12 (995315): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 04:49:12] Arguments: --nthreads 3
[2025-11-28 04:49:12] Threads: 3
[2025-11-28 04:49:12] Checking for CVMFS
[2025-11-28 04:49:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:49:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:49:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:49:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:49:14] 2.9.2.0 995440 0 29968 153395 3 1 36190195 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 04:49:14] CVMFS is ok
[2025-11-28 04:49:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 04:49:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 04:49:14] Further information can be found at the LHC@home message board.
[2025-11-28 04:49:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:49:14] Checking for apptainer binary...
[2025-11-28 04:49:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 04:49:14] Running /usr/bin/apptainer --version
[2025-11-28 04:49:14] apptainer version 1.4.1-1.1
[2025-11-28 04:49:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:49:14] thA335
[2025-11-28 04:49:14] apptainer works
[2025-11-28 04:49:14] Set ATHENA_PROC_NUMBER=3
[2025-11-28 04:49:14] Set ATHENA_CORE_NUMBER=3
[2025-11-28 04:49:14] Starting ATLAS job with PandaID=6895356268
[2025-11-28 04:49:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:53:34]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:53:34] 2025-11-28 03:52:46,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | INFO     | update_server=False
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:53:34] 2025-11-28 03:52:46,623 | INFO     | aborting loop
[2025-11-28 04:53:34] 2025-11-28 03:52:47,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:53:34] 2025-11-28 03:52:47,504 | INFO     | all job control threads have been joined
[2025-11-28 04:53:34] 2025-11-28 03:52:47,622 | INFO     | all data control threads have been joined
[2025-11-28 04:53:34] 2025-11-28 03:52:47,628 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:47,629 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:47,630 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:47,667 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:47,957 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,066 | INFO     | all payload control threads have been joined
[2025-11-28 04:53:34] 2025-11-28 03:52:48,510 | INFO     | [job] control thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,628 | INFO     | [data] control thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,632 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,868 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,908 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:48,930 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:49,031 | INFO     | [job] validate thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:49,073 | INFO     | [payload] control thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:49,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:49,380 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:52:49,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:53:34] 2025-11-28 03:52:53,687 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:53:34] 2025-11-28 03:53:16,797 | INFO     | PID=999520 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 04:53:34] 2025-11-28 03:53:16,797 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:53:34] 2025-11-28 03:53:16,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:53:34] 2025-11-28 03:53:16,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:53:34] 2025-11-28 03:53:27,755 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:53:34] 2025-11-28 03:53:29,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140482817431360)>', '<ExcThread(monitor, started 140482172663552)>']
[2025-11-28 04:53:34] 2025-11-28 03:53:29,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:53:34] 2025-11-28 03:53:29,866 | INFO     | [monitor] control thread has ended
[2025-11-28 04:53:34] 2025-11-28 03:53:34,562 | INFO     | all workflow threads have been joined
[2025-11-28 04:53:34] 2025-11-28 03:53:34,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:53:34] 2025-11-28 03:53:34,563 | INFO     | traces error code: 0
[2025-11-28 04:53:34] 2025-11-28 03:53:34,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:53:34] 2025-11-28 03:53:34,610 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:53:34] 2025-11-28 03:53:34,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:53:34] 2025-11-28 03:53:34,616 [wrapper] pilotpid: 999520
[2025-11-28 04:53:34] 2025-11-28 03:53:34,619 [wrapper] Pilot exit status: 0
[2025-11-28 04:53:34] 2025-11-28 03:53:34,627 [wrapper] pandaids: 6895356268
[2025-11-28 04:53:34] 2025-11-28 03:53:34,644 [wrapper] cleanup supervisor_pilot  999526 999521
[2025-11-28 04:53:34] 2025-11-28 03:53:34,647 [wrapper] Test setup, not cleaning
[2025-11-28 04:53:34] 2025-11-28 03:53:34,649 [wrapper] apfmon messages muted
[2025-11-28 04:53:34] 2025-11-28 03:53:34,652 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:53:34] 2025-11-28 03:53:34,654 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:53:34]  *** Error codes and diagnostics ***
[2025-11-28 04:53:34]     "exeErrorCode": 65,
[2025-11-28 04:53:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 04:53:34]     "pilotErrorCode": 1305,
[2025-11-28 04:53:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 04:53:34]  *** Listing of results directory ***
[2025-11-28 04:53:34] total 400692
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc    576529 Nov 23 11:16 pilot3.tar.gz
[2025-11-28 04:53:34] -rwx------ 1 boinc boinc     36292 Nov 23 11:52 runpilot2-wrapper.sh
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      5112 Nov 23 11:52 queuedata.json
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc       100 Nov 28 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:53:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 04:49 run_atlas
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc       105 Nov 28 04:49 job.xml
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc 406125277 Nov 28 04:49 EVNT.47483658._000693.pool.root.1
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc    590095 Nov 28 04:49 input.tar.gz
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:49 start_atlas.sh
[2025-11-28 04:53:34] drwxrwx--x 2 boinc boinc      4096 Nov 28 04:49 shared
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:49 boinc_setup_complete
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      6196 Nov 28 04:49 init_data.xml
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:49 boinc_lockfile
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      2786 Nov 28 04:49 pandaJob.out
[2025-11-28 04:53:34] -rw------- 1 boinc boinc    991850 Nov 28 04:49 agis_schedconf.cvmfs.json
[2025-11-28 04:53:34] -rw------- 1 boinc boinc   1516240 Nov 28 04:49 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:53:34] drwx------ 5 boinc boinc      4096 Nov 28 04:49 pilot3
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc       522 Nov 28 04:50 boinc_task_state.xml
[2025-11-28 04:53:34] -rw------- 1 boinc boinc       971 Nov 28 04:50 memory_monitor_summary.json
[2025-11-28 04:53:34] -rw------- 1 boinc boinc     55749 Nov 28 04:50 log.47556137._006889.job.log.tgz.1
[2025-11-28 04:53:34] -rw------- 1 boinc boinc        95 Nov 28 04:52 pilot_heartbeat.json
[2025-11-28 04:53:34] -rw------- 1 boinc boinc      8407 Nov 28 04:52 heartbeat.json
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      8192 Nov 28 04:53 boinc_mmap_file
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc        22 Nov 28 04:53 wrapper_checkpoint.txt
[2025-11-28 04:53:34] -rw------- 1 boinc boinc      4751 Nov 28 04:53 pilotlog.txt
[2025-11-28 04:53:34] -rw------- 1 boinc boinc     93664 Nov 28 04:53 log.47556137._006889.job.log.1
[2025-11-28 04:53:34] -rw------- 1 boinc boinc       186 Nov 28 04:53 output.list
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc       620 Nov 28 04:53 runtime_log
[2025-11-28 04:53:34] -rw------- 1 boinc boinc    163840 Nov 28 04:53 result.tar.gz
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      8744 Nov 28 04:53 runtime_log.err
[2025-11-28 04:53:34] -rw------- 1 boinc boinc       648 Nov 28 04:53 XPYNDmHtMh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYVIKDmhtMm3n.diag
[2025-11-28 04:53:34] -rw-r--r-- 1 boinc boinc      7998 Nov 28 04:53 stderr.txt
[2025-11-28 04:53:34] No HITS result produced
[2025-11-28 04:53:34]  *** Contents of shared directory: ***
[2025-11-28 04:53:34] total 397364
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc 406125277 Nov 28 04:49 ATLAS.root_0
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc    590095 Nov 28 04:49 input.tar.gz
[2025-11-28 04:53:34] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:49 start_atlas.sh
[2025-11-28 04:53:34] -rw------- 1 boinc boinc    163840 Nov 28 04:53 result.tar.gz
04:53:36 (995315): run_atlas exited; CPU time 31.408986
04:53:36 (995315): called boinc_finish(0)

</stderr_txt>
]]>

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