Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:42:46 (3448217): wrapper (7.7.26015): starting
18:42:46 (3448217): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 18:42:46] Arguments: --nthreads 12
[2025-11-27 18:42:46] Threads: 12
[2025-11-27 18:42:46] Checking for CVMFS
[2025-11-27 18:42:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 18:42:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 18:42:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 18:42:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 18:42:49] 2.11.5.0 2451234 30380 225916 153393 2 414 36635551 45568001 25977 130560 0 277539566 99.776 176172299 26042 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-27 18:42:49] CVMFS is ok
[2025-11-27 18:42:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 18:42:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 18:42:49] Further information can be found at the LHC@home message board.
[2025-11-27 18:42:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:42:49] Checking for apptainer binary...
[2025-11-27 18:42:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 18:42:49] Running /usr/bin/apptainer --version
[2025-11-27 18:42:49] apptainer version 1.4.1-1.el9
[2025-11-27 18:42:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:42:49] wns0065.triumf.lcg
[2025-11-27 18:42:49] apptainer works
[2025-11-27 18:42:49] Set ATHENA_PROC_NUMBER=12
[2025-11-27 18:42:49] Set ATHENA_CORE_NUMBER=12
[2025-11-27 18:42:49] Starting ATLAS job with PandaID=6899449484
[2025-11-27 18:42:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:49:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | WARNING  | wrong length of table data, x=[1764297895.0, 1764297956.0], y=[1000.0, 614196.0] (must be same and length>=4)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . Timing measurements:
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . get job = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . initial setup = 3 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload setup = 26 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-in = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload execution = 137 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-out = 1 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . log creation = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899449484/pilotlog.txt
[2025-11-27 18:49:52] 2025-11-28 02:49:17,577 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 18:49:52] - Log from pilotlog.txt -
[2025-11-27 18:49:52] 2025-11-28 02:49:17,559 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6899449484/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | INFO     | extracted standard info from prmon json
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | WARNING  | wrong length of table data, x=[1764297895.0, 1764297956.0], y=[1000.0, 614196.0] (must be same and length>=4)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . Timing measurements:
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . get job = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . initial setup = 3 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload setup = 26 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-in = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload execution = 137 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-out = 1 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . log creation = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899449484/pilotlog.txt
[2025-11-27 18:49:52] 2025-11-28 02:49:17,577 | WARNING  | 
[2025-11-27 18:49:52] [begin log extracts]
[2025-11-27 18:49:52] - Log from pilotlog.txt -
[2025-11-27 18:49:52] 2025-11-28 02:49:17,559 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6899449484/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | INFO     | extracted standard info from prmon json
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 18:49:52] 2025-11-28 02:49:17,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | WARNING  | wrong length of table data, x=[1764297895.0, 1764297956.0], y=[1000.0, 614196.0] (must be same and length>=4)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . Timing measurements:
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . get job = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,561 | INFO     | . initial setup = 3 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload setup = 26 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-in = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . payload execution = 137 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . stage-out = 1 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | . log creation = 0 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | ..............................
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 18:49:52] 2025-11-28 02:49:17,562 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899449484/pilotlog.txt
[2025-11-27 18:49:52] [end log extracts]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,577 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,578 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | 
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | job summary report
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | --------------------------------------------------
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | PanDA job id: 6899449484
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | task id: 47556185
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 18:46:39,475 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | pilot state: failed 
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | transexitcode: 65
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | exeerrorcode: 65
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | exitcode: 65
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | cpuconsumptiontime: 44 s
[2025-11-27 18:49:52] 2025-11-28 02:49:17,870 | INFO     | nevents: 0
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | neventsw: 0
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | pid: 3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | pgrp: 3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | corecount: 12
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | event service: False
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | sizes: {0: 2284311, 11: 2284311, 18: 2284601, 22: 2284629, 168: 2310077, 169: 2310053, 171: 2314499, 173: 2314527, 318: 2314693}
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | --------------------------------------------------
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | 
[2025-11-27 18:49:52] 2025-11-28 02:49:17,871 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:49:52] 2025-11-28 02:49:17,978 | INFO     | job 6899449484 has completed (purged errors)
[2025-11-27 18:49:52] 2025-11-28 02:49:17,978 | INFO     | overall cleanup function is called
[2025-11-27 18:49:52] 2025-11-28 02:49:18,998 | INFO     | --- collectZombieJob: --- 10, [3461908]
[2025-11-27 18:49:52] 2025-11-28 02:49:18,998 | INFO     | zombie collector waiting for pid 3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:18,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:49:52] 2025-11-28 02:49:18,998 | INFO     | collected zombie processes
[2025-11-27 18:49:52] 2025-11-28 02:49:18,998 | INFO     | will attempt to kill all subprocesses of pid=3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:19,780 | INFO     | process IDs to be killed: [3461908] (in reverse order)
[2025-11-27 18:49:52] 2025-11-28 02:49:20,213 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:49:52] 2025-11-28 02:49:20,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:49:52] 2025-11-28 02:49:20,246 | INFO     | did not find any defunct processes belonging to 3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:20,264 | INFO     | did not find any defunct processes belonging to 3461908
[2025-11-27 18:49:52] 2025-11-28 02:49:20,265 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:49:52] 2025-11-28 02:49:20,265 | INFO     | ready for new job
[2025-11-27 18:49:52] 2025-11-28 02:49:20,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:49:52] 2025-11-28 02:49:20,267 | INFO     | ***************************************
[2025-11-27 18:49:52] 2025-11-28 02:49:20,267 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:49:52] 2025-11-28 02:49:20,267 | INFO     | ***************************************
[2025-11-27 18:49:52] 2025-11-28 02:49:20,267 | INFO     | 
[2025-11-27 18:49:52] 2025-11-28 02:49:20,269 | INFO     | architecture information:
[2025-11-27 18:49:52] 2025-11-28 02:49:20,274 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:49:52] 2025-11-28 02:49:20,336 | INFO     | cat /etc/os-release:
[2025-11-27 18:49:52] NAME="CentOS Linux"
[2025-11-27 18:49:52] VERSION="7 (Core)"
[2025-11-27 18:49:52] ID="centos"
[2025-11-27 18:49:52] ID_LIKE="rhel fedora"
[2025-11-27 18:49:52] VERSION_ID="7"
[2025-11-27 18:49:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:49:52] ANSI_COLOR="0;31"
[2025-11-27 18:49:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:49:52] HOME_URL="https://www.centos.org/"
[2025-11-27 18:49:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:49:52] 
[2025-11-27 18:49:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:49:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:49:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:49:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:49:52] 
[2025-11-27 18:49:52] 2025-11-28 02:49:20,336 | INFO     | ***************************************
[2025-11-27 18:49:52] 2025-11-28 02:49:20,840 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 18:49:52] 2025-11-28 02:49:20,994 | INFO     | sufficient remaining disk space (1998805008384 B)
[2025-11-27 18:49:52] 2025-11-28 02:49:20,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:49:52] 2025-11-28 02:49:20,995 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:49:52] 2025-11-28 02:49:20,995 | INFO     | update_server=False
[2025-11-27 18:49:52] 2025-11-28 02:49:20,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:49:52] 2025-11-28 02:49:20,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:49:52] 2025-11-28 02:49:20,999 | INFO     | aborting loop
[2025-11-27 18:49:52] 2025-11-28 02:49:21,139 | INFO     | all job control threads have been joined
[2025-11-27 18:49:52] 2025-11-28 02:49:21,389 | INFO     | all payload control threads have been joined
[2025-11-27 18:49:52] 2025-11-28 02:49:21,799 | INFO     | all data control threads have been joined
[2025-11-27 18:49:52] 2025-11-28 02:49:21,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:49:52] 2025-11-28 02:49:22,001 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,018 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,145 | INFO     | [job] control thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,270 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,326 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,395 | INFO     | [payload] control thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,806 | INFO     | [data] control thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,837 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,837 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:22,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:49:52] 2025-11-28 02:49:23,087 | INFO     | [job] validate thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:23,092 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:23,344 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:23,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:49:52] 2025-11-28 02:49:23,894 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:23,945 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:26,637 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:49:52] 2025-11-28 02:49:27,424 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:49:52] 2025-11-28 02:49:28,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516616009536)>', '<ExcThread(monitor, started 140516054247168)>']
[2025-11-27 18:49:52] 2025-11-28 02:49:33,076 | INFO     | all workflow threads have been joined
[2025-11-27 18:49:52] 2025-11-28 02:49:33,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:49:52] 2025-11-28 02:49:33,080 | INFO     | traces error code: 0
[2025-11-27 18:49:52] 2025-11-28 02:49:33,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:49:52] 2025-11-28 02:49:51,151 | INFO     | PID=3452040 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | INFO     | .. there are 48 such processes running
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:49:52] 2025-11-28 02:49:51,152 | INFO     | [monitor] control thread has ended
[2025-11-27 18:49:52] 2025-11-28 02:49:51,937 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:49:52] 2025-11-28 02:49:51,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:49:52] 2025-11-28 02:49:51,980 [wrapper] pilotpid: 3452040
[2025-11-27 18:49:52] 2025-11-28 02:49:51,997 [wrapper] Pilot exit status: 0
[2025-11-27 18:49:52] 2025-11-28 02:49:52,101 [wrapper] pandaids: 6899449484
[2025-11-27 18:49:52] 2025-11-28 02:49:52,425 [wrapper] cleanup supervisor_pilot 3452046 3452041
[2025-11-27 18:49:52] 2025-11-28 02:49:52,442 [wrapper] Test setup, not cleaning
[2025-11-27 18:49:52] 2025-11-28 02:49:52,456 [wrapper] apfmon messages muted
[2025-11-27 18:49:52] 2025-11-28 02:49:52,462 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:49:52] 2025-11-28 02:49:52,483 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:49:52]  *** Error codes and diagnostics ***
[2025-11-27 18:49:52]     "exeErrorCode": 65,
[2025-11-27 18:49:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 18:49:52]     "pilotErrorCode": 1305,
[2025-11-27 18:49:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 18:49:52]  *** Listing of results directory ***
[2025-11-27 18:49:52] total 405348
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc    576529 Nov 27 00:46 pilot3.tar.gz
[2025-11-27 18:49:52] -rwx------. 1 boinc boinc     36292 Nov 27 00:49 runpilot2-wrapper.sh
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc      5112 Nov 27 00:53 queuedata.json
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc       100 Nov 27 18:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:49:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 18:42 run_atlas
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc       105 Nov 27 18:42 job.xml
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc      6596 Nov 27 18:42 init_data.xml
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc 410848961 Nov 27 18:42 EVNT.47483658._004319.pool.root.1
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 18:42 start_atlas.sh
[2025-11-27 18:49:52] drwxrwx--x. 2 boinc boinc      4096 Nov 27 18:42 shared
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc    590112 Nov 27 18:42 input.tar.gz
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc         0 Nov 27 18:42 boinc_lockfile
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc      2786 Nov 27 18:42 pandaJob.out
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc    991842 Nov 27 18:43 agis_schedconf.cvmfs.json
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc   1516240 Nov 27 18:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:49:52] drwx------. 5 boinc boinc      4096 Nov 27 18:43 pilot3
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc       524 Nov 27 18:46 boinc_task_state.xml
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc       987 Nov 27 18:46 memory_monitor_summary.json
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc     49653 Nov 27 18:46 log.47556185._000823.job.log.tgz.1
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc     10339 Nov 27 18:49 heartbeat.json
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc        23 Nov 27 18:49 wrapper_checkpoint.txt
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc      8192 Nov 27 18:49 boinc_mmap_file
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc        95 Nov 27 18:49 pilot_heartbeat.json
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc       823 Nov 27 18:49 pilotlog.txt
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc    108466 Nov 27 18:49 log.47556185._000823.job.log.1
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc       186 Nov 27 18:49 output.list
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc       620 Nov 27 18:49 runtime_log
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc    184320 Nov 27 18:49 result.tar.gz
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc      8636 Nov 27 18:49 runtime_log.err
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc       645 Nov 27 18:49 KKGMDmJsmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZiKKDmgBH3Eo.diag
[2025-11-27 18:49:52] -rw-r--r--. 1 boinc boinc     22503 Nov 27 18:49 stderr.txt
[2025-11-27 18:49:52] No HITS result produced
[2025-11-27 18:49:52]  *** Contents of shared directory: ***
[2025-11-27 18:49:52] total 401996
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc 410848961 Nov 27 18:42 ATLAS.root_0
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 18:42 start_atlas.sh
[2025-11-27 18:49:52] -rw-r--r--. 2 boinc boinc    590112 Nov 27 18:42 input.tar.gz
[2025-11-27 18:49:52] -rw-------. 1 boinc boinc    184320 Nov 27 18:49 result.tar.gz
18:49:54 (3448217): run_atlas exited; CPU time 52.068150
18:49:54 (3448217): called boinc_finish(0)

</stderr_txt>
]]>

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