Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:49 (9888): wrapper (7.7.26015): starting
00:39:49 (9888): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 00:39:49] Arguments: --nthreads 8
[2025-11-30 00:39:49] Threads: 8
[2025-11-30 00:39:49] Checking for CVMFS
[2025-11-30 00:39:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:39:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:39:52] 2.11.2.0 31287 195148 140124 153461 1 84 15684709 25165825 2504 130560 11 67672717 99.883 35945005 2195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 00:39:52] CVMFS is ok
[2025-11-30 00:39:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:39:52] Checking for apptainer binary...
[2025-11-30 00:39:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:39:52] Running /usr/bin/apptainer --version
[2025-11-30 00:39:52] apptainer version 1.3.2-1.el7
[2025-11-30 00:39:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:40:03] cg-vwn426.simple-grid.lan
[2025-11-30 00:40:03] apptainer works
[2025-11-30 00:40:03] Set ATHENA_PROC_NUMBER=8
[2025-11-30 00:40:03] Set ATHENA_CORE_NUMBER=8
[2025-11-30 00:40:03] Starting ATLAS job with PandaID=6899500629
[2025-11-30 00:40:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 00:46:01]  *** The last 200 lines of the pilot log: ***
[2025-12-01 00:46:01] 2025-11-30 23:44:57,720 | INFO     | sum of deviations: 4796960703339.83
[2025-12-01 00:46:01] 2025-11-30 23:44:57,720 | INFO     | mean x: 1764503296.1334279
[2025-12-01 00:46:01] 2025-11-30 23:44:57,720 | INFO     | mean y: 2860720.320085167
[2025-12-01 00:46:01] 2025-11-30 23:44:57,721 | INFO     | intersect: -9755502673.561924
[2025-12-01 00:46:01] 2025-11-30 23:44:57,722 | INFO     | chi2: 16.244364910037778
[2025-12-01 00:46:01] 2025-11-30 23:44:57,724 | INFO     | sum of square deviations: 858183661150.469
[2025-12-01 00:46:01] 2025-11-30 23:44:57,784 | INFO     | sum of deviations: 5305830183986.757
[2025-12-01 00:46:01] 2025-11-30 23:44:57,785 | INFO     | mean x: 1764503143.6374643
[2025-12-01 00:46:01] 2025-11-30 23:44:57,785 | INFO     | mean y: 2869154.685185185
[2025-12-01 00:46:01] 2025-11-30 23:44:57,785 | INFO     | intersect: -10906397081.752369
[2025-12-01 00:46:01] 2025-11-30 23:44:57,787 | INFO     | chi2: 12.699385986037118
[2025-12-01 00:46:01] 2025-11-30 23:44:57,787 | INFO     | current chi2=12.699385986037118 (change=21.822822521120127 %)
[2025-12-01 00:46:01] 2025-11-30 23:44:57,787 | INFO     | right removable region: 1403
[2025-12-01 00:46:01] 2025-11-30 23:44:57,789 | INFO     | sum of square deviations: 858182686980.4689
[2025-12-01 00:46:01] 2025-11-30 23:44:57,846 | INFO     | sum of deviations: 4213088897358.2544
[2025-12-01 00:46:01] 2025-11-30 23:44:57,847 | INFO     | mean x: 1764503448.6374643
[2025-12-01 00:46:01] 2025-11-30 23:44:57,847 | INFO     | mean y: 2870396.25
[2025-12-01 00:46:01] 2025-11-30 23:44:57,847 | INFO     | intersect: -8659632357.052502
[2025-12-01 00:46:01] 2025-11-30 23:44:57,849 | INFO     | chi2: 11.606280142849942
[2025-12-01 00:46:01] 2025-11-30 23:44:57,849 | INFO     | current chi2=11.606280142849942 (change=28.551961205463034 %)
[2025-12-01 00:46:01] 2025-11-30 23:44:57,851 | INFO     | sum of square deviations: 849046196033.9774
[2025-12-01 00:46:01] 2025-11-30 23:44:57,913 | INFO     | sum of deviations: 3701046886100.2886
[2025-12-01 00:46:01] 2025-11-30 23:44:57,914 | INFO     | mean x: 1764503601.1415296
[2025-12-01 00:46:01] 2025-11-30 23:44:57,914 | INFO     | mean y: 2878942.1551107937
[2025-12-01 00:46:01] 2025-11-30 23:44:57,914 | INFO     | intersect: -7688705554.686877
[2025-12-01 00:46:01] 2025-11-30 23:44:57,916 | INFO     | chi2: 8.163859857403343
[2025-12-01 00:46:01] 2025-11-30 23:44:57,916 | INFO     | current chi2=8.163859857403343 (change=29.659979279125913 %)
[2025-12-01 00:46:01] 2025-11-30 23:44:57,918 | INFO     | sum of square deviations: 839974776074.938
[2025-12-01 00:46:01] 2025-11-30 23:44:57,984 | INFO     | sum of deviations: 3234780560370.6475
[2025-12-01 00:46:01] 2025-11-30 23:44:57,985 | INFO     | mean x: 1764503753.6456242
[2025-12-01 00:46:01] 2025-11-30 23:44:57,985 | INFO     | mean y: 2886781.2037302726
[2025-12-01 00:46:01] 2025-11-30 23:44:57,985 | INFO     | intersect: -6792296364.253825
[2025-12-01 00:46:01] 2025-11-30 23:44:57,987 | INFO     | chi2: 5.385743628337712
[2025-12-01 00:46:01] 2025-11-30 23:44:57,987 | INFO     | current chi2=5.385743628337712 (change=34.02944535538927 %)
[2025-12-01 00:46:01] 2025-11-30 23:44:57,989 | INFO     | sum of square deviations: 830968449034.744
[2025-12-01 00:46:01] 2025-11-30 23:44:58,045 | INFO     | sum of deviations: 2984559267757.9478
[2025-12-01 00:46:01] 2025-11-30 23:44:58,045 | INFO     | mean x: 1764503906.1475883
[2025-12-01 00:46:01] 2025-11-30 23:44:58,045 | INFO     | mean y: 2891013.985601152
[2025-12-01 00:46:01] 2025-11-30 23:44:58,046 | INFO     | intersect: -6334613727.8673525
[2025-12-01 00:46:01] 2025-11-30 23:44:58,047 | INFO     | chi2: 4.476047595064022
[2025-12-01 00:46:01] 2025-11-30 23:44:58,047 | INFO     | current chi2=4.476047595064022 (change=16.890815754526805 %)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,047 | INFO     | left removable region: 40
[2025-12-01 00:46:01] 2025-11-30 23:44:58,049 | INFO     | sum of square deviations: 785173619635.5624
[2025-12-01 00:46:01] 2025-11-30 23:44:58,114 | INFO     | sum of deviations: 3153726385597.2295
[2025-12-01 00:46:01] 2025-11-30 23:44:58,114 | INFO     | mean x: 1764504333.151871
[2025-12-01 00:46:01] 2025-11-30 23:44:58,114 | INFO     | mean y: 2906974.9699192955
[2025-12-01 00:46:01] 2025-11-30 23:44:58,115 | INFO     | intersect: -7084396691.121893
[2025-12-01 00:46:01] 2025-11-30 23:44:58,116 | INFO     | chi2: 0.4735646069975705
[2025-12-01 00:46:01] 2025-11-30 23:44:58,117 | INFO     | current memory leak: 4.02 B/s (using 1363 data points, chi2=0.47)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,118 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,118 | INFO     | ..............................
[2025-12-01 00:46:01] 2025-11-30 23:44:58,118 | INFO     | . Timing measurements:
[2025-12-01 00:46:01] 2025-11-30 23:44:58,118 | INFO     | . get job = 0 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,118 | INFO     | . initial setup = 9 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | . payload setup = 145 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | . stage-in = 0 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | . payload execution = 86080 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | . stage-out = 3 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | . log creation = 1 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,119 | INFO     | ..............................
[2025-12-01 00:46:01] 2025-11-30 23:44:58,244 | INFO     | 
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | job summary report
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | --------------------------------------------------
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | PanDA job id: 6899500629
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | task id: 47556173
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | errors: (none)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | pilot state: finished 
[2025-12-01 00:46:01] 2025-11-30 23:44:58,245 | INFO     | transexitcode: 0
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | exeerrorcode: 0
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | exeerrordiag: 
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | exitcode: 0
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | exitmsg: OK
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | cpuconsumptiontime: 325583 s
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | nevents: 1000
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | neventsw: 0
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | pid: 20636
[2025-12-01 00:46:01] 2025-11-30 23:44:58,246 | INFO     | pgrp: 20636
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | corecount: 8
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | event service: False
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | sizes: {0: 2284316, 1: 2284316, 12: 2284344, 22: 2284372, 33: 2284400, 44: 2284456, 55: 2284612, 65: 2284640, 76: 2284668, 87: 2284724, 93: 2285014, 97: 2285322, 8
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | --------------------------------------------------
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | 
[2025-12-01 00:46:01] 2025-11-30 23:44:58,247 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-01 00:46:01] 2025-11-30 23:44:58,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 00:46:01] 2025-11-30 23:44:58,277 | INFO     | job 6899500629 has completed (purged errors)
[2025-12-01 00:46:01] 2025-11-30 23:44:58,277 | INFO     | overall cleanup function is called
[2025-12-01 00:46:01] 2025-11-30 23:44:59,293 | INFO     | --- collectZombieJob: --- 10, [20636]
[2025-12-01 00:46:01] 2025-11-30 23:44:59,294 | INFO     | zombie collector waiting for pid 20636
[2025-12-01 00:46:01] 2025-11-30 23:44:59,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 00:46:01] 2025-11-30 23:44:59,294 | INFO     | collected zombie processes
[2025-12-01 00:46:01] 2025-11-30 23:44:59,294 | INFO     | will attempt to kill all subprocesses of pid=20636
[2025-12-01 00:46:01] 2025-11-30 23:44:59,443 | INFO     | process IDs to be killed: [20636] (in reverse order)
[2025-12-01 00:46:01] 2025-11-30 23:44:59,715 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 00:46:01] 2025-11-30 23:44:59,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 00:46:01] 2025-11-30 23:44:59,719 | INFO     | did not find any defunct processes belonging to 20636
[2025-12-01 00:46:01] 2025-11-30 23:44:59,721 | INFO     | did not find any defunct processes belonging to 20636
[2025-12-01 00:46:01] 2025-11-30 23:44:59,728 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 00:46:01] 2025-11-30 23:44:59,728 | INFO     | ready for new job
[2025-12-01 00:46:01] 2025-11-30 23:44:59,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 00:46:01] 2025-11-30 23:44:59,733 | INFO     | ***************************************
[2025-12-01 00:46:01] 2025-11-30 23:44:59,734 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 00:46:01] 2025-11-30 23:44:59,734 | INFO     | ***************************************
[2025-12-01 00:46:01] 2025-11-30 23:44:59,734 | INFO     | 
[2025-12-01 00:46:01] 2025-11-30 23:44:59,735 | INFO     | pilot is running in a VM
[2025-12-01 00:46:01] 2025-11-30 23:44:59,735 | INFO     | architecture information:
[2025-12-01 00:46:01] 2025-11-30 23:44:59,735 | INFO     | executing command: cat /etc/os-release
[2025-12-01 00:46:01] 2025-11-30 23:44:59,767 | INFO     | cat /etc/os-release:
[2025-12-01 00:46:01] NAME="CentOS Linux"
[2025-12-01 00:46:01] VERSION="7 (Core)"
[2025-12-01 00:46:01] ID="centos"
[2025-12-01 00:46:01] ID_LIKE="rhel fedora"
[2025-12-01 00:46:01] VERSION_ID="7"
[2025-12-01 00:46:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 00:46:01] ANSI_COLOR="0;31"
[2025-12-01 00:46:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 00:46:01] HOME_URL="https://www.centos.org/"
[2025-12-01 00:46:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 00:46:01] 
[2025-12-01 00:46:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 00:46:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 00:46:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 00:46:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 00:46:01] 
[2025-12-01 00:46:01] 2025-11-30 23:44:59,767 | INFO     | ***************************************
[2025-12-01 00:46:01] 2025-11-30 23:45:00,270 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-01 00:46:01] 2025-11-30 23:45:00,391 | INFO     | sufficient remaining disk space (489023340544 B)
[2025-12-01 00:46:01] 2025-11-30 23:45:00,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 00:46:01] 2025-11-30 23:45:00,392 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 00:46:01] 2025-11-30 23:45:00,392 | INFO     | update_server=False
[2025-12-01 00:46:01] 2025-11-30 23:45:00,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 00:46:01] 2025-11-30 23:45:00,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 00:46:01] 2025-11-30 23:45:00,432 | INFO     | all data control threads have been joined
[2025-12-01 00:46:01] 2025-11-30 23:45:00,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 00:46:01] 2025-11-30 23:45:00,675 | INFO     | all job control threads have been joined
[2025-12-01 00:46:01] 2025-11-30 23:45:00,709 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 00:46:01] 2025-11-30 23:45:00,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 00:46:01] 2025-11-30 23:45:00,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:46:01] 2025-11-30 23:45:00,710 | INFO     | will abort loop
[2025-12-01 00:46:01] 2025-11-30 23:45:01,008 | INFO     | all payload control threads have been joined
[2025-12-01 00:46:01] 2025-11-30 23:45:01,400 | INFO     | [job] retrieve thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,438 | INFO     | [data] control thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,446 | INFO     | [data] copytool_in thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,681 | INFO     | [job] control thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,686 | INFO     | [payload] validate_post thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,686 | INFO     | [job] validate thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,715 | INFO     | [job] job monitor thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,800 | INFO     | [payload] failed_post thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:01,921 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:02,016 | INFO     | [payload] control thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:02,283 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:02,460 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:02,654 | INFO     | [data] copytool_out thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:02,755 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:03,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:46:01] 2025-11-30 23:45:04,265 | INFO     | [job] queue monitor thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:04,401 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 00:46:01] 2025-11-30 23:45:15,437 [wrapper] supervise_pilot (15 min periods counter: 97)
[2025-12-01 00:46:01] 2025-11-30 23:45:29,643 | INFO     | PID=13701 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 00:46:01] 2025-11-30 23:45:29,643 | INFO     | .. there are 9 such processes running
[2025-12-01 00:46:01] 2025-11-30 23:45:29,648 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 00:46:01] 2025-11-30 23:45:29,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 00:46:01] 2025-11-30 23:45:29,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 00:46:01] 2025-11-30 23:45:50,222 | INFO     | [monitor] cgroup control has ended
[2025-12-01 00:46:01] 2025-11-30 23:45:51,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908879574848)>', '<ExcThread(monitor, started 139908576417536)>']
[2025-12-01 00:46:01] 2025-11-30 23:45:51,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 00:46:01] 2025-11-30 23:45:51,779 | INFO     | [monitor] control thread has ended
[2025-12-01 00:46:01] 2025-11-30 23:45:56,273 | INFO     | all workflow threads have been joined
[2025-12-01 00:46:01] 2025-11-30 23:45:56,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 00:46:01] 2025-11-30 23:45:56,273 | INFO     | traces error code: 0
[2025-12-01 00:46:01] 2025-11-30 23:45:56,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 00:46:01] 2025-11-30 23:45:56,536 [wrapper] ==== pilot stdout END ====
[2025-12-01 00:46:01] 2025-11-30 23:45:56,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 00:46:01] 2025-11-30 23:45:56,666 [wrapper] pilotpid: 13701
[2025-12-01 00:46:01] 2025-11-30 23:45:56,727 [wrapper] Pilot exit status: 0
[2025-12-01 00:46:01] 2025-11-30 23:45:57,095 [wrapper] pandaids: 6899500629
[2025-12-01 00:46:01] 2025-11-30 23:45:58,351 [wrapper] cleanup supervisor_pilot 32727 13702
[2025-12-01 00:46:01] 2025-11-30 23:45:58,429 [wrapper] Test setup, not cleaning
[2025-12-01 00:46:01] 2025-11-30 23:45:58,505 [wrapper] apfmon messages muted
[2025-12-01 00:46:01] 2025-11-30 23:45:58,618 [wrapper] ==== wrapper stdout END ====
[2025-12-01 00:46:01] 2025-11-30 23:45:58,735 [wrapper] ==== wrapper stderr END ====
[2025-12-01 00:46:01]  *** Error codes and diagnostics ***
[2025-12-01 00:46:01]     "exeErrorCode": 0,
[2025-12-01 00:46:01]     "exeErrorDiag": "",
[2025-12-01 00:46:01]     "pilotErrorCode": 0,
[2025-12-01 00:46:01]     "pilotErrorDiag": "",
[2025-12-01 00:46:01]  *** Listing of results directory ***
[2025-12-01 00:46:01] total 1343456
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 00:46:01] -rwx------. 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc       100 Nov 30 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 00:46:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 00:39 run_atlas
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc       105 Nov 30 00:39 job.xml
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc 410695997 Nov 30 00:39 EVNT.47483658._003368.pool.root.1
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc     15847 Nov 30 00:39 start_atlas.sh
[2025-12-01 00:46:01] drwxrwx--x. 2 boinc boinc        68 Nov 30 00:39 shared
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc    590107 Nov 30 00:39 input.tar.gz
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc      6391 Nov 30 00:39 init_data.xml
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc         0 Nov 30 00:39 boinc_lockfile
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc      2787 Nov 30 00:40 pandaJob.out
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc    991826 Nov 30 00:44 agis_schedconf.cvmfs.json
[2025-12-01 00:46:01] drwx------. 5 boinc boinc      4096 Nov 30 00:44 pilot3
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc       533 Dec  1 00:33 boinc_task_state.xml
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc 933012427 Dec  1 00:43 HITS.47556173._003249.pool.root.1
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc      1035 Dec  1 00:44 memory_monitor_summary.json
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc   1516240 Dec  1 00:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc   2492673 Dec  1 00:44 log.47556173._003249.job.log.tgz.1
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc      8627 Dec  1 00:44 heartbeat.json
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc        95 Dec  1 00:45 pilot_heartbeat.json
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc      8192 Dec  1 00:45 boinc_mmap_file
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc        29 Dec  1 00:45 wrapper_checkpoint.txt
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc      5070 Dec  1 00:45 pilotlog.txt
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc  11547554 Dec  1 00:45 log.47556173._003249.job.log.1
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc       353 Dec  1 00:46 output.list
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc       620 Dec  1 00:46 runtime_log
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc  14059520 Dec  1 00:46 result.tar.gz
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc      8817 Dec  1 00:46 runtime_log.err
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc       662 Dec  1 00:46 R7jMDm9rmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNgKKDmdOzSIo.diag
[2025-12-01 00:46:01] -rw-r--r--. 1 boinc boinc     20862 Dec  1 00:46 stderr.txt
[2025-12-01 00:46:01] HITS file was successfully produced:
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc 933012427 Dec  1 00:43 shared/HITS.pool.root.1
[2025-12-01 00:46:01]  *** Contents of shared directory: ***
[2025-12-01 00:46:01] total 1326548
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc 410695997 Nov 30 00:39 ATLAS.root_0
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc     15847 Nov 30 00:39 start_atlas.sh
[2025-12-01 00:46:01] -rw-r--r--. 2 boinc boinc    590107 Nov 30 00:39 input.tar.gz
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc 933012427 Dec  1 00:43 HITS.pool.root.1
[2025-12-01 00:46:01] -rw-------. 1 boinc boinc  14059520 Dec  1 00:46 result.tar.gz
00:46:02 (9888): run_atlas exited; CPU time 326222.474485
00:46:02 (9888): called boinc_finish(0)

</stderr_txt>
]]>

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