Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:27:41 (13011): wrapper (7.7.26015): starting
02:27:41 (13011): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 02:27:41] Arguments: --nthreads 8
[2025-11-30 02:27:41] Threads: 8
[2025-11-30 02:27:41] Checking for CVMFS
[2025-11-30 02:27:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 02:27:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 02:27:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 02:27:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 02:27:43] 2.11.2.0 27863 290489 137144 153463 2 84 24553226 25165825 2554 130560 9 147692322 99.878 84116941 3670 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 02:27:43] CVMFS is ok
[2025-11-30 02:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 02:27:44] Checking for apptainer binary...
[2025-11-30 02:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 02:27:44] Running /usr/bin/apptainer --version
[2025-11-30 02:27:44] apptainer version 1.3.2-1.el7
[2025-11-30 02:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 02:27:56] cg-vwn495.simple-grid.lan
[2025-11-30 02:27:56] apptainer works
[2025-11-30 02:27:56] Set ATHENA_PROC_NUMBER=8
[2025-11-30 02:27:56] Set ATHENA_CORE_NUMBER=8
[2025-11-30 02:27:56] Starting ATLAS job with PandaID=6899449825
[2025-11-30 02:27:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 00:24:43]  *** The last 200 lines of the pilot log: ***
[2025-12-01 00:24:43] 2025-11-30 23:23:23,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:24:43] 2025-11-30 23:23:24,914 | INFO     | time since job start (78727s) is within the limit (172800.0s)
[2025-12-01 00:24:43] 2025-11-30 23:23:26,333 | INFO     | monitor loop #5340: job 0:6899449825 is in state 'finished'
[2025-12-01 00:24:43] 2025-11-30 23:23:26,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:24:43] 2025-11-30 23:23:26,926 | INFO     | time since job start (78729s) is within the limit (172800.0s)
[2025-12-01 00:24:43] 2025-11-30 23:23:28,842 | INFO     | monitor loop #5341: job 0:6899449825 is in state 'finished'
[2025-12-01 00:24:43] 2025-11-30 23:23:28,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:24:43] 2025-11-30 23:23:28,933 | INFO     | time since job start (78731s) is within the limit (172800.0s)
[2025-12-01 00:24:43] 2025-11-30 23:23:30,941 | INFO     | time since job start (78733s) is within the limit (172800.0s)
[2025-12-01 00:24:43] 2025-11-30 23:23:31,347 | INFO     | monitor loop #5342: job 0:6899449825 is in state 'finished'
[2025-12-01 00:24:43] 2025-11-30 23:23:31,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:24:43] 2025-11-30 23:23:32,644 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 00:24:43] 2025-11-30 23:23:32,644 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 00:24:43] 2025-11-30 23:23:32,646 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6899449825/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 00:24:43] 2025-11-30 23:23:32,647 | INFO     | extracted standard info from prmon json
[2025-12-01 00:24:44] 2025-11-30 23:23:32,647 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 00:24:44] 2025-11-30 23:23:32,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 00:24:44] 2025-11-30 23:23:32,668 | INFO     | fitting pss+swap vs Time
[2025-12-01 00:24:44] 2025-11-30 23:23:32,670 | INFO     | sum of square deviations: 651817975859.1022
[2025-12-01 00:24:44] 2025-11-30 23:23:32,711 | INFO     | sum of deviations: 2929701553699.2373
[2025-12-01 00:24:44] 2025-11-30 23:23:32,712 | INFO     | mean x: 1764505820.0733802
[2025-12-01 00:24:44] 2025-11-30 23:23:32,712 | INFO     | mean y: 2836407.018735363
[2025-12-01 00:24:44] 2025-11-30 23:23:32,712 | INFO     | intersect: -7928021031.772995
[2025-12-01 00:24:44] 2025-11-30 23:23:32,713 | INFO     | chi2: 22.448443440248237
[2025-12-01 00:24:44] 2025-11-30 23:23:32,715 | INFO     | sum of square deviations: 644215629423.3196
[2025-12-01 00:24:44] 2025-11-30 23:23:32,764 | INFO     | sum of deviations: 3348014636605.3013
[2025-12-01 00:24:44] 2025-11-30 23:23:32,765 | INFO     | mean x: 1764505667.5775862
[2025-12-01 00:24:44] 2025-11-30 23:23:32,765 | INFO     | mean y: 2844798.5979623822
[2025-12-01 00:24:44] 2025-11-30 23:23:32,765 | INFO     | intersect: -9167362398.503178
[2025-12-01 00:24:44] 2025-11-30 23:23:32,766 | INFO     | chi2: 19.346001207478597
[2025-12-01 00:24:44] 2025-11-30 23:23:32,767 | INFO     | current chi2=19.346001207478597 (change=13.820300017805302 %)
[2025-12-01 00:24:44] 2025-11-30 23:23:32,767 | INFO     | right removable region: 1275
[2025-12-01 00:24:44] 2025-11-30 23:23:32,768 | INFO     | sum of square deviations: 644214790673.3186
[2025-12-01 00:24:44] 2025-11-30 23:23:32,820 | INFO     | sum of deviations: 2383173155369.8374
[2025-12-01 00:24:44] 2025-11-30 23:23:32,820 | INFO     | mean x: 1764505972.5775862
[2025-12-01 00:24:44] 2025-11-30 23:23:32,820 | INFO     | mean y: 2847368.9106583074
[2025-12-01 00:24:44] 2025-11-30 23:23:32,820 | INFO     | intersect: -6524670047.976885
[2025-12-01 00:24:44] 2025-11-30 23:23:32,822 | INFO     | chi2: 17.51307340275223
[2025-12-01 00:24:44] 2025-11-30 23:23:32,822 | INFO     | current chi2=17.51307340275223 (change=21.98535524582203 %)
[2025-12-01 00:24:44] 2025-11-30 23:23:32,822 | INFO     | left removable region: 10
[2025-12-01 00:24:44] 2025-11-30 23:23:32,824 | INFO     | sum of square deviations: 627697374140.4346
[2025-12-01 00:24:44] 2025-11-30 23:23:32,880 | INFO     | sum of deviations: 2430966551190.1333
[2025-12-01 00:24:44] 2025-11-30 23:23:32,880 | INFO     | mean x: 1764505942.0869565
[2025-12-01 00:24:44] 2025-11-30 23:23:32,880 | INFO     | mean y: 2867203.753359684
[2025-12-01 00:24:44] 2025-11-30 23:23:32,880 | INFO     | intersect: -6830768081.822883
[2025-12-01 00:24:44] 2025-11-30 23:23:32,882 | INFO     | chi2: 10.124908720440176
[2025-12-01 00:24:44] 2025-11-30 23:23:32,882 | INFO     | current memory leak: 3.87 B/s (using 1265 data points, chi2=10.12)
[2025-12-01 00:24:44] 2025-11-30 23:23:32,883 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-12-01 00:24:44] 2025-11-30 23:23:32,883 | INFO     | ..............................
[2025-12-01 00:24:44] 2025-11-30 23:23:32,883 | INFO     | . Timing measurements:
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . get job = 0 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . initial setup = 6 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . payload setup = 156 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . stage-in = 0 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . payload execution = 78303 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . stage-out = 5 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | . log creation = 2 s
[2025-12-01 00:24:44] 2025-11-30 23:23:32,884 | INFO     | ..............................
[2025-12-01 00:24:44] 2025-11-30 23:23:32,972 | INFO     | time since job start (78735s) is within the limit (172800.0s)
[2025-12-01 00:24:44] 2025-11-30 23:23:33,451 | INFO     | 
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | job summary report
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | --------------------------------------------------
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | PanDA job id: 6899449825
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | task id: 47556173
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | errors: (none)
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | pilot state: finished 
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | transexitcode: 0
[2025-12-01 00:24:44] 2025-11-30 23:23:33,452 | INFO     | exeerrorcode: 0
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | exeerrordiag: 
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | exitcode: 0
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | exitmsg: OK
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | cpuconsumptiontime: 293070 s
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | nevents: 1000
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | neventsw: 0
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | pid: 23348
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | pgrp: 23348
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | corecount: 8
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | event service: False
[2025-12-01 00:24:44] 2025-11-30 23:23:33,453 | INFO     | sizes: {0: 2283488, 1: 2284174, 2: 2284373, 13: 2284373, 23: 2284429, 34: 2284457, 45: 2284613, 56: 2284641, 66: 2284669, 77: 2284697, 86: 2285015, 88: 2285323, 78
[2025-12-01 00:24:44] 2025-11-30 23:23:33,454 | INFO     | --------------------------------------------------
[2025-12-01 00:24:44] 2025-11-30 23:23:33,454 | INFO     | 
[2025-12-01 00:24:44] 2025-11-30 23:23:33,454 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-01 00:24:44] 2025-11-30 23:23:33,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | job 6899449825 has completed (purged errors)
[2025-12-01 00:24:44] 2025-11-30 23:23:33,787 | INFO     | overall cleanup function is called
[2025-12-01 00:24:44] 2025-11-30 23:23:34,113 | INFO     | PID=16785 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 00:24:44] 2025-11-30 23:23:34,113 | INFO     | .. there are 9 such processes running
[2025-12-01 00:24:44] 2025-11-30 23:23:34,803 | INFO     | --- collectZombieJob: --- 10, [23348]
[2025-12-01 00:24:44] 2025-11-30 23:23:34,804 | INFO     | zombie collector waiting for pid 23348
[2025-12-01 00:24:44] 2025-11-30 23:23:34,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 00:24:44] 2025-11-30 23:23:34,804 | INFO     | collected zombie processes
[2025-12-01 00:24:44] 2025-11-30 23:23:34,804 | INFO     | will attempt to kill all subprocesses of pid=23348
[2025-12-01 00:24:44] 2025-11-30 23:23:34,927 | INFO     | process IDs to be killed: [23348] (in reverse order)
[2025-12-01 00:24:44] 2025-11-30 23:23:35,268 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 00:24:44] 2025-11-30 23:23:35,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 00:24:44] 2025-11-30 23:23:35,271 | INFO     | did not find any defunct processes belonging to 23348
[2025-12-01 00:24:44] 2025-11-30 23:23:35,273 | INFO     | did not find any defunct processes belonging to 23348
[2025-12-01 00:24:44] 2025-11-30 23:23:35,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 00:24:44] 2025-11-30 23:23:35,277 | INFO     | ready for new job
[2025-12-01 00:24:44] 2025-11-30 23:23:35,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 00:24:44] 2025-11-30 23:23:35,282 | INFO     | ***************************************
[2025-12-01 00:24:44] 2025-11-30 23:23:35,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 00:24:44] 2025-11-30 23:23:35,282 | INFO     | ***************************************
[2025-12-01 00:24:44] 2025-11-30 23:23:35,282 | INFO     | 
[2025-12-01 00:24:44] 2025-11-30 23:23:35,283 | INFO     | pilot is running in a VM
[2025-12-01 00:24:44] 2025-11-30 23:23:35,283 | INFO     | architecture information:
[2025-12-01 00:24:44] 2025-11-30 23:23:35,284 | INFO     | executing command: cat /etc/os-release
[2025-12-01 00:24:44] 2025-11-30 23:23:35,351 | INFO     | cat /etc/os-release:
[2025-12-01 00:24:44] NAME="CentOS Linux"
[2025-12-01 00:24:44] VERSION="7 (Core)"
[2025-12-01 00:24:44] ID="centos"
[2025-12-01 00:24:44] ID_LIKE="rhel fedora"
[2025-12-01 00:24:44] VERSION_ID="7"
[2025-12-01 00:24:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 00:24:44] ANSI_COLOR="0;31"
[2025-12-01 00:24:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 00:24:44] HOME_URL="https://www.centos.org/"
[2025-12-01 00:24:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 00:24:44] 
[2025-12-01 00:24:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 00:24:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 00:24:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 00:24:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 00:24:44] 
[2025-12-01 00:24:44] 2025-11-30 23:23:35,351 | INFO     | ***************************************
[2025-12-01 00:24:44] 2025-11-30 23:23:35,855 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-01 00:24:44] 2025-11-30 23:23:35,975 | INFO     | sufficient remaining disk space (487848935424 B)
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | INFO     | update_server=False
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 00:24:44] 2025-11-30 23:23:35,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 00:24:44] 2025-11-30 23:23:36,362 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 00:24:44] 2025-11-30 23:23:36,363 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 00:24:44] 2025-11-30 23:23:36,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:24:44] 2025-11-30 23:23:36,363 | INFO     | will abort loop
[2025-12-01 00:24:44] 2025-11-30 23:23:36,757 | INFO     | all data control threads have been joined
[2025-12-01 00:24:44] 2025-11-30 23:23:36,982 | INFO     | [job] retrieve thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:36,991 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,021 | INFO     | all payload control threads have been joined
[2025-12-01 00:24:44] 2025-11-30 23:23:37,301 | INFO     | all job control threads have been joined
[2025-12-01 00:24:44] 2025-11-30 23:23:37,369 | INFO     | [job] job monitor thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,417 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,516 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,600 | INFO     | [data] copytool_in thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,630 | INFO     | [payload] failed_post thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,764 | INFO     | [data] control thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,832 | INFO     | [job] validate thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,953 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:37,986 | INFO     | [data] copytool_out thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:38,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:24:44] 2025-11-30 23:23:38,027 | INFO     | [payload] control thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:38,031 | INFO     | [payload] validate_post thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:38,307 | INFO     | [job] control thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:39,019 | INFO     | [job] queue monitor thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:23:39,985 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 00:24:44] 2025-11-30 23:24:06,327 | INFO     | PID=16785 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 00:24:44] 2025-11-30 23:24:06,327 | INFO     | .. there are 9 such processes running
[2025-12-01 00:24:44] 2025-11-30 23:24:06,327 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 00:24:44] 2025-11-30 23:24:06,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 00:24:44] 2025-11-30 23:24:06,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 00:24:44] 2025-11-30 23:24:33,429 | INFO     | [monitor] cgroup control has ended
[2025-12-01 00:24:44] 2025-11-30 23:24:34,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589013198656)>', '<ExcThread(monitor, started 140588305348352)>']
[2025-12-01 00:24:44] 2025-11-30 23:24:35,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 00:24:44] 2025-11-30 23:24:35,500 | INFO     | [monitor] control thread has ended
[2025-12-01 00:24:44] 2025-11-30 23:24:39,523 | INFO     | all workflow threads have been joined
[2025-12-01 00:24:44] 2025-11-30 23:24:39,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 00:24:44] 2025-11-30 23:24:39,524 | INFO     | traces error code: 0
[2025-12-01 00:24:44] 2025-11-30 23:24:39,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 00:24:44] 2025-11-30 23:24:39,732 [wrapper] ==== pilot stdout END ====
[2025-12-01 00:24:44] 2025-11-30 23:24:39,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 00:24:44] 2025-11-30 23:24:39,843 [wrapper] pilotpid: 16785
[2025-12-01 00:24:44] 2025-11-30 23:24:39,904 [wrapper] Pilot exit status: 0
[2025-12-01 00:24:44] 2025-11-30 23:24:40,267 [wrapper] pandaids: 6899449825
[2025-12-01 00:24:44] 2025-11-30 23:24:41,046 [wrapper] cleanup supervisor_pilot 32647 16786
[2025-12-01 00:24:44] 2025-11-30 23:24:41,157 [wrapper] Test setup, not cleaning
[2025-12-01 00:24:44] 2025-11-30 23:24:41,235 [wrapper] apfmon messages muted
[2025-12-01 00:24:44] 2025-11-30 23:24:41,320 [wrapper] ==== wrapper stdout END ====
[2025-12-01 00:24:44] 2025-11-30 23:24:41,409 [wrapper] ==== wrapper stderr END ====
[2025-12-01 00:24:44]  *** Error codes and diagnostics ***
[2025-12-01 00:24:44]     "exeErrorCode": 0,
[2025-12-01 00:24:44]     "exeErrorDiag": "",
[2025-12-01 00:24:44]     "pilotErrorCode": 0,
[2025-12-01 00:24:44]     "pilotErrorDiag": "",
[2025-12-01 00:24:44]  *** Listing of results directory ***
[2025-12-01 00:24:44] total 1325408
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 00:24:44] -rwx------. 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc       100 Nov 30 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 00:24:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 02:27 run_atlas
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc       105 Nov 30 02:27 job.xml
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc 410193497 Nov 30 02:27 EVNT.47483658._003318.pool.root.1
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc     15847 Nov 30 02:27 start_atlas.sh
[2025-12-01 00:24:44] drwxrwx--x. 2 boinc boinc        68 Nov 30 02:27 shared
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc    590113 Nov 30 02:27 input.tar.gz
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc      6392 Nov 30 02:27 init_data.xml
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc         0 Nov 30 02:27 boinc_lockfile
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc      2787 Nov 30 02:27 pandaJob.out
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc    991828 Nov 30 02:31 agis_schedconf.cvmfs.json
[2025-12-01 00:24:44] drwx------. 5 boinc boinc      4096 Nov 30 02:31 pilot3
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc       533 Nov 30 23:59 boinc_task_state.xml
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc 917256874 Dec  1 00:20 HITS.47556173._002745.pool.root.1
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc      1031 Dec  1 00:21 memory_monitor_summary.json
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc   1516240 Dec  1 00:22 agis_ddmendpoints.agis.ALL.json
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc   2395986 Dec  1 00:22 log.47556173._002745.job.log.tgz.1
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc        95 Dec  1 00:23 pilot_heartbeat.json
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc      8638 Dec  1 00:23 heartbeat.json
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc      8192 Dec  1 00:24 boinc_mmap_file
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc        29 Dec  1 00:24 wrapper_checkpoint.txt
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc      5071 Dec  1 00:24 pilotlog.txt
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc  10537740 Dec  1 00:24 log.47556173._002745.job.log.1
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc       353 Dec  1 00:24 output.list
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc       620 Dec  1 00:24 runtime_log
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc  12953600 Dec  1 00:24 result.tar.gz
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc       662 Dec  1 00:24 W78KDm0rmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmafKKDmLDp04n.diag
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc      8833 Dec  1 00:24 runtime_log.err
[2025-12-01 00:24:44] -rw-r--r--. 1 boinc boinc     21500 Dec  1 00:24 stderr.txt
[2025-12-01 00:24:44] HITS file was successfully produced:
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc 917256874 Dec  1 00:20 shared/HITS.pool.root.1
[2025-12-01 00:24:44]  *** Contents of shared directory: ***
[2025-12-01 00:24:44] total 1309588
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc 410193497 Nov 30 02:27 ATLAS.root_0
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc     15847 Nov 30 02:27 start_atlas.sh
[2025-12-01 00:24:44] -rw-r--r--. 2 boinc boinc    590113 Nov 30 02:27 input.tar.gz
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc 917256874 Dec  1 00:20 HITS.pool.root.1
[2025-12-01 00:24:44] -rw-------. 1 boinc boinc  12953600 Dec  1 00:24 result.tar.gz
00:24:45 (13011): run_atlas exited; CPU time 293559.595668
00:24:45 (13011): called boinc_finish(0)

</stderr_txt>
]]>

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