Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:55:48 (2328007): wrapper (7.7.26015): starting
20:55:48 (2328007): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 20:55:49] Arguments: --nthreads 8
[2025-11-27 20:55:49] Threads: 8
[2025-11-27 20:55:49] Checking for CVMFS
[2025-11-27 20:55:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:55:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:55:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:55:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:55:49] 2.13.2.0 6751 36593 256928 153392 1 349 37764449 40960000 24090 16776704 0 114326063 99.594 121919955 38088 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 20:55:49] CVMFS is ok
[2025-11-27 20:55:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:55:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:55:49] Further information can be found at the LHC@home message board.
[2025-11-27 20:55:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:55:49] Checking for apptainer binary...
[2025-11-27 20:55:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:55:49] Running /usr/bin/apptainer --version
[2025-11-27 20:55:49] apptainer version 1.4.4-1.el9
[2025-11-27 20:55:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:55:49] c-212-7.aglt2.org
[2025-11-27 20:55:49] apptainer works
[2025-11-27 20:55:49] Set ATHENA_PROC_NUMBER=8
[2025-11-27 20:55:49] Set ATHENA_CORE_NUMBER=8
[2025-11-27 20:55:50] Starting ATLAS job with PandaID=6899595940
[2025-11-27 20:55:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:07 (2328007): BOINC client no longer exists - exiting
01:20:07 (2328007): timer handler: client dead, exiting
01:28:48 (3210756): wrapper (7.7.26015): starting
01:28:48 (3210756): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 01:28:48] Arguments: --nthreads 8
[2025-11-28 01:28:48] Threads: 8
[2025-11-28 01:28:48] This job has been restarted, cleaning up previous attempt
[2025-11-28 01:28:48] Checking for CVMFS
[2025-11-28 01:28:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:28:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:28:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:28:49] 2.13.2.0 6751 36866 250176 153400 1 323 38653714 40960001 18177 16776704 0 115684141 99.600 122054413 38081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 01:28:49] CVMFS is ok
[2025-11-28 01:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 01:28:49] Further information can be found at the LHC@home message board.
[2025-11-28 01:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:28:49] Checking for apptainer binary...
[2025-11-28 01:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:28:49] Running /usr/bin/apptainer --version
[2025-11-28 01:28:49] apptainer version 1.4.4-1.el9
[2025-11-28 01:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:28:49] c-212-7.aglt2.org
[2025-11-28 01:28:49] apptainer works
[2025-11-28 01:28:49] Set ATHENA_PROC_NUMBER=8
[2025-11-28 01:28:49] Set ATHENA_CORE_NUMBER=8
[2025-11-28 01:28:49] Starting ATLAS job with PandaID=6899595940
[2025-11-28 01:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:58:29]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:58:29] 2025-11-28 18:57:47,889 | INFO     | time since job start (44922s) is within the limit (172800.0s)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,302 | INFO     | monitor loop #2831: job 0:6899595940 is in state 'finished'
[2025-11-28 13:58:29] 2025-11-28 18:57:48,302 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,348 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 13:58:29] 2025-11-28 18:57:48,354 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2974.856958333335
[2025-11-28 13:58:29] 2025-11-28 18:57:48,369 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6899595940/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,370 | INFO     | extracted standard info from prmon json
[2025-11-28 13:58:29] 2025-11-28 18:57:48,370 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 13:58:29] 2025-11-28 18:57:48,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 13:58:29] 2025-11-28 18:57:48,380 | INFO     | fitting pss+swap vs Time
[2025-11-28 13:58:29] 2025-11-28 18:57:48,382 | INFO     | sum of square deviations: 123624296482.99858
[2025-11-28 13:58:29] 2025-11-28 18:57:48,394 | INFO     | sum of deviations: 1108538418498.886
[2025-11-28 13:58:29] 2025-11-28 18:57:48,394 | INFO     | mean x: 1764333802.4361413
[2025-11-28 13:58:29] 2025-11-28 18:57:48,395 | INFO     | mean y: 2833912.6358695654
[2025-11-28 13:58:29] 2025-11-28 18:57:48,395 | INFO     | intersect: -15817938044.805857
[2025-11-28 13:58:29] 2025-11-28 18:57:48,395 | INFO     | chi2: 5.13620370868221
[2025-11-28 13:58:29] 2025-11-28 18:57:48,396 | INFO     | sum of square deviations: 121122022493.587
[2025-11-28 13:58:29] 2025-11-28 18:57:48,408 | INFO     | sum of deviations: 1308502779713.374
[2025-11-28 13:58:29] 2025-11-28 18:57:48,409 | INFO     | mean x: 1764333649.9425445
[2025-11-28 13:58:29] 2025-11-28 18:57:48,409 | INFO     | mean y: 2846088.270861833
[2025-11-28 13:58:29] 2025-11-28 18:57:48,409 | INFO     | intersect: -19057564543.609863
[2025-11-28 13:58:29] 2025-11-28 18:57:48,410 | INFO     | chi2: 2.7546821852091234
[2025-11-28 13:58:29] 2025-11-28 18:57:48,410 | INFO     | current chi2=2.7546821852091234 (change=46.367349477345996 %)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,410 | INFO     | sum of square deviations: 118653749141.61429
[2025-11-28 13:58:29] 2025-11-28 18:57:48,422 | INFO     | sum of deviations: 1373931890984.1729
[2025-11-28 13:58:29] 2025-11-28 18:57:48,422 | INFO     | mean x: 1764333497.449036
[2025-11-28 13:58:29] 2025-11-28 18:57:48,422 | INFO     | mean y: 2850120.247933884
[2025-11-28 13:58:29] 2025-11-28 18:57:48,422 | INFO     | intersect: -20426964158.808006
[2025-11-28 13:58:29] 2025-11-28 18:57:48,423 | INFO     | chi2: 2.3013385909251274
[2025-11-28 13:58:29] 2025-11-28 18:57:48,423 | INFO     | current chi2=2.3013385909251274 (change=16.457201368570225 %)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,423 | INFO     | right removable region: 725
[2025-11-28 13:58:29] 2025-11-28 18:57:48,424 | INFO     | sum of square deviations: 121121825703.97829
[2025-11-28 13:58:29] 2025-11-28 18:57:48,436 | INFO     | sum of deviations: 924522653811.7617
[2025-11-28 13:58:29] 2025-11-28 18:57:48,436 | INFO     | mean x: 1764333954.9357045
[2025-11-28 13:58:29] 2025-11-28 18:57:48,436 | INFO     | mean y: 2845102.675786594
[2025-11-28 13:58:29] 2025-11-28 18:57:48,436 | INFO     | intersect: -13464312453.3367
[2025-11-28 13:58:29] 2025-11-28 18:57:48,437 | INFO     | chi2: 3.0388315619596153
[2025-11-28 13:58:29] 2025-11-28 18:57:48,437 | INFO     | current chi2=3.0388315619596153 (change=40.83506546239995 %)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,438 | INFO     | sum of square deviations: 118653446092.19275
[2025-11-28 13:58:29] 2025-11-28 18:57:48,449 | INFO     | sum of deviations: 866069312104.0839
[2025-11-28 13:58:29] 2025-11-28 18:57:48,450 | INFO     | mean x: 1764334107.4325068
[2025-11-28 13:58:29] 2025-11-28 18:57:48,450 | INFO     | mean y: 2848712.9201101926
[2025-11-28 13:58:29] 2025-11-28 18:57:48,450 | INFO     | intersect: -12875290751.807892
[2025-11-28 13:58:29] 2025-11-28 18:57:48,450 | INFO     | chi2: 2.9584743025452367
[2025-11-28 13:58:29] 2025-11-28 18:57:48,451 | INFO     | current chi2=2.9584743025452367 (change=2.6443472688746072 %)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,451 | INFO     | left removable region: 20
[2025-11-28 13:58:29] 2025-11-28 18:57:48,451 | INFO     | sum of square deviations: 108652331351.95216
[2025-11-28 13:58:29] 2025-11-28 18:57:48,462 | INFO     | sum of deviations: 1041083575683.7386
[2025-11-28 13:58:29] 2025-11-28 18:57:48,463 | INFO     | mean x: 1764334076.9460993
[2025-11-28 13:58:29] 2025-11-28 18:57:48,463 | INFO     | mean y: 2870733.1773049645
[2025-11-28 13:58:29] 2025-11-28 18:57:48,463 | INFO     | intersect: -16902603881.792484
[2025-11-28 13:58:29] 2025-11-28 18:57:48,463 | INFO     | chi2: 0.05734762117547519
[2025-11-28 13:58:29] 2025-11-28 18:57:48,464 | INFO     | current memory leak: 9.58 B/s (using 705 data points, chi2=0.06)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | could have reported an average CPU frequency of 2953 MHz (28 samples)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | ..............................
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . Timing measurements:
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . get job = 0 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . initial setup = 2 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . payload setup = 9 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . stage-in = 0 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . payload execution = 44878 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,465 | INFO     | . stage-out = 3 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,466 | INFO     | . log creation = 0 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,466 | INFO     | ..............................
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | 
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | job summary report
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | --------------------------------------------------
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | PanDA job id: 6899595940
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | task id: 47556185
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | errors: (none)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | pilot state: finished 
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | transexitcode: 0
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | exeerrorcode: 0
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | exeerrordiag: 
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | exitcode: 0
[2025-11-28 13:58:29] 2025-11-28 18:57:48,751 | INFO     | exitmsg: OK
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | cpuconsumptiontime: 206035 s
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | nevents: 1000
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | neventsw: 0
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | pid: 3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | pgrp: 3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | corecount: 8
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | event service: False
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | sizes: {0: 2284145, 1: 2284344, 8: 2284606, 12: 2284634, 44891: 2330625, 44894: 2339619, 44897: 2339803, 44905: 2340049}
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | --------------------------------------------------
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | 
[2025-11-28 13:58:29] 2025-11-28 18:57:48,752 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 13:58:29] 2025-11-28 18:57:48,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,777 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,777 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,777 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,778 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 13:58:29] 2025-11-28 18:57:48,779 | INFO     | job 6899595940 has completed (purged errors)
[2025-11-28 13:58:29] 2025-11-28 18:57:48,779 | INFO     | overall cleanup function is called
[2025-11-28 13:58:29] 2025-11-28 18:57:49,796 | INFO     | --- collectZombieJob: --- 10, [3280861]
[2025-11-28 13:58:29] 2025-11-28 18:57:49,797 | INFO     | zombie collector waiting for pid 3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:49,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 13:58:29] 2025-11-28 18:57:49,797 | INFO     | collected zombie processes
[2025-11-28 13:58:29] 2025-11-28 18:57:49,797 | INFO     | will attempt to kill all subprocesses of pid=3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:50,231 | INFO     | process IDs to be killed: [3280861] (in reverse order)
[2025-11-28 13:58:29] 2025-11-28 18:57:50,362 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 13:58:29] 2025-11-28 18:57:50,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 13:58:29] 2025-11-28 18:57:50,380 | INFO     | did not find any defunct processes belonging to 3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:50,397 | INFO     | did not find any defunct processes belonging to 3280861
[2025-11-28 13:58:29] 2025-11-28 18:57:50,398 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 13:58:29] 2025-11-28 18:57:50,399 | INFO     | ready for new job
[2025-11-28 13:58:29] 2025-11-28 18:57:50,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 13:58:29] 2025-11-28 18:57:50,403 | INFO     | ***************************************
[2025-11-28 13:58:29] 2025-11-28 18:57:50,403 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 13:58:29] 2025-11-28 18:57:50,403 | INFO     | ***************************************
[2025-11-28 13:58:29] 2025-11-28 18:57:50,403 | INFO     | 
[2025-11-28 13:58:29] 2025-11-28 18:57:50,408 | INFO     | architecture information:
[2025-11-28 13:58:29] 2025-11-28 18:57:50,408 | INFO     | executing command: cat /etc/os-release
[2025-11-28 13:58:29] 2025-11-28 18:57:50,430 | INFO     | cat /etc/os-release:
[2025-11-28 13:58:29] NAME="CentOS Linux"
[2025-11-28 13:58:29] VERSION="7 (Core)"
[2025-11-28 13:58:29] ID="centos"
[2025-11-28 13:58:29] ID_LIKE="rhel fedora"
[2025-11-28 13:58:29] VERSION_ID="7"
[2025-11-28 13:58:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 13:58:29] ANSI_COLOR="0;31"
[2025-11-28 13:58:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 13:58:29] HOME_URL="https://www.centos.org/"
[2025-11-28 13:58:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 13:58:29] 
[2025-11-28 13:58:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 13:58:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 13:58:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 13:58:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 13:58:29] 
[2025-11-28 13:58:29] 2025-11-28 18:57:50,430 | INFO     | ***************************************
[2025-11-28 13:58:29] 2025-11-28 18:57:50,931 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | INFO     | sufficient remaining disk space (118796320768 B)
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | INFO     | update_server=False
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 13:58:29] 2025-11-28 18:57:50,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:58:29] 2025-11-28 18:57:51,137 | INFO     | all data control threads have been joined
[2025-11-28 13:58:29] 2025-11-28 18:57:51,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:58:29] 2025-11-28 18:57:51,810 | INFO     | aborting loop
[2025-11-28 13:58:29] 2025-11-28 18:57:51,944 | INFO     | all job control threads have been joined
[2025-11-28 13:58:29] 2025-11-28 18:57:51,954 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,143 | INFO     | [data] control thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,157 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,238 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,334 | INFO     | all payload control threads have been joined
[2025-11-28 13:58:29] 2025-11-28 18:57:52,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:58:29] 2025-11-28 18:57:52,405 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,544 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,736 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,815 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:52,950 | INFO     | [job] control thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:53,339 | INFO     | [payload] control thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:53,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:53,422 | INFO     | [job] validate thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:53,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:58:29] 2025-11-28 18:57:54,399 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:54,561 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:57:54,957 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:58:29] 2025-11-28 18:58:21,441 | INFO     | PID=3236384 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 13:58:29] 2025-11-28 18:58:21,441 | INFO     | .. there are 25 such processes running
[2025-11-28 13:58:29] 2025-11-28 18:58:21,441 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:58:29] 2025-11-28 18:58:21,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:58:29] 2025-11-28 18:58:21,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:58:29] 2025-11-28 18:58:22,240 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:58:29] 2025-11-28 18:58:23,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140014355425088)>', '<ExcThread(monitor, started 140014004442880)>']
[2025-11-28 13:58:29] 2025-11-28 18:58:24,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:58:29] 2025-11-28 18:58:24,458 | INFO     | [monitor] control thread has ended
[2025-11-28 13:58:29] 2025-11-28 18:58:29,008 | INFO     | all workflow threads have been joined
[2025-11-28 13:58:29] 2025-11-28 18:58:29,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:58:29] 2025-11-28 18:58:29,008 | INFO     | traces error code: 0
[2025-11-28 13:58:29] 2025-11-28 18:58:29,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:58:29] 2025-11-28 18:58:29,141 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:58:29] 2025-11-28 18:58:29,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:58:29] 2025-11-28 18:58:29,152 [wrapper] pilotpid: 3236384
[2025-11-28 13:58:29] 2025-11-28 18:58:29,225 [wrapper] Pilot exit status: 0
[2025-11-28 13:58:29] 2025-11-28 18:58:29,245 [wrapper] pandaids: 6899595940 6899595940
[2025-11-28 13:58:29] 2025-11-28 18:58:29,334 [wrapper] cleanup supervisor_pilot  962077 3236385
[2025-11-28 13:58:29] 2025-11-28 18:58:29,337 [wrapper] Test setup, not cleaning
[2025-11-28 13:58:29] 2025-11-28 18:58:29,341 [wrapper] apfmon messages muted
[2025-11-28 13:58:29] 2025-11-28 18:58:29,347 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:58:29] 2025-11-28 18:58:29,350 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:58:29]  *** Error codes and diagnostics ***
[2025-11-28 13:58:29]     "exeErrorCode": 0,
[2025-11-28 13:58:29]     "exeErrorDiag": "",
[2025-11-28 13:58:29]     "pilotErrorCode": 0,
[2025-11-28 13:58:29]     "pilotErrorDiag": "",
[2025-11-28 13:58:29]  *** Listing of results directory ***
[2025-11-28 13:58:29] total 1721744
[2025-11-28 13:58:29] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 03:46 pilot3.tar.gz
[2025-11-28 13:58:29] -rwx------. 1 boincer umatlas     36292 Nov 27 03:47 runpilot2-wrapper.sh
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 03:49 queuedata.json
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 20:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:58:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 20:55 run_atlas
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 20:55 job.xml
[2025-11-28 13:58:29] -rw-r--r--. 3 boincer umatlas 412444967 Nov 27 20:55 EVNT.47483658._004338.pool.root.1
[2025-11-28 13:58:29] -rw-r--r--. 3 boincer umatlas 412444967 Nov 27 20:55 ATLAS.root_0
[2025-11-28 13:58:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 20:55 start_atlas.sh
[2025-11-28 13:58:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 20:55 shared
[2025-11-28 13:58:29] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 20:55 input.tar.gz
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 20:55 boinc_lockfile
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas      2787 Nov 28 01:28 pandaJob.out
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas        57 Nov 28 01:28 setup.sh.local
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas    991866 Nov 28 01:29 agis_schedconf.cvmfs.json
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas       533 Nov 28 13:47 boinc_task_state.xml
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 13:56 init_data.xml
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas 918594915 Nov 28 13:57 HITS.47556185._001015.pool.root.1
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas        96 Nov 28 13:57 pilot_heartbeat.json
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas      1061 Nov 28 13:57 memory_monitor_summary.json
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas   1516240 Nov 28 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas   1958722 Nov 28 13:57 log.47556185._001015.job.log.tgz.1
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas      8596 Nov 28 13:57 heartbeat.json
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 13:58 boinc_mmap_file
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas        29 Nov 28 13:58 wrapper_checkpoint.txt
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas      4825 Nov 28 13:58 pilotlog.txt
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas   5869215 Nov 28 13:58 log.47556185._001015.job.log.1
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas       353 Nov 28 13:58 output.list
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas       620 Nov 28 13:58 runtime_log
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas   7843840 Nov 28 13:58 result.tar.gz
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas      9423 Nov 28 13:58 runtime_log.err
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas       788 Nov 28 13:58 7NmKDm4pmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmudKKDmCCagrm.diag
[2025-11-28 13:58:29] -rw-r--r--. 1 boincer umatlas     23630 Nov 28 13:58 stderr.txt
[2025-11-28 13:58:29] HITS file was successfully produced:
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas 918594915 Nov 28 13:57 shared/HITS.pool.root.1
[2025-11-28 13:58:29]  *** Contents of shared directory: ***
[2025-11-28 13:58:29] total 1308112
[2025-11-28 13:58:29] -rw-r--r--. 3 boincer umatlas 412444967 Nov 27 20:55 ATLAS.root_0
[2025-11-28 13:58:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 20:55 start_atlas.sh
[2025-11-28 13:58:29] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 20:55 input.tar.gz
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas 918594915 Nov 28 13:57 HITS.pool.root.1
[2025-11-28 13:58:29] -rw-------. 1 boincer umatlas   7843840 Nov 28 13:58 result.tar.gz
13:58:31 (3210756): run_atlas exited; CPU time 206626.617913
13:58:31 (3210756): called boinc_finish(0)

</stderr_txt>
]]>

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