Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:16:39 (17416): wrapper (7.7.26015): starting
20:16:39 (17416): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 20:16:39] Arguments: --nthreads 8
[2025-11-29 20:16:39] Threads: 8
[2025-11-29 20:16:39] Checking for CVMFS
[2025-11-29 20:16:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 20:16:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 20:16:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 20:16:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 20:16:42] 2.11.2.0 13466 290078 140224 153453 0 84 20262237 25165825 2504 130560 11 141707203 99.866 88995093 3418 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 20:16:42] CVMFS is ok
[2025-11-29 20:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 20:16:42] Checking for apptainer binary...
[2025-11-29 20:16:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 20:16:42] Running /usr/bin/apptainer --version
[2025-11-29 20:16:42] apptainer version 1.3.2-1.el7
[2025-11-29 20:16:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 20:16:54] cg-vwn493.simple-grid.lan
[2025-11-29 20:16:54] apptainer works
[2025-11-29 20:16:54] Set ATHENA_PROC_NUMBER=8
[2025-11-29 20:16:54] Set ATHENA_CORE_NUMBER=8
[2025-11-29 20:16:54] Starting ATLAS job with PandaID=6899596296
[2025-11-29 20:16:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 18:10:26]  *** The last 200 lines of the pilot log: ***
[2025-11-30 18:10:26] 2025-11-30 17:09:39,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:10:26] 2025-11-30 17:09:40,434 | INFO     | time since job start (78523s) is within the limit (172800.0s)
[2025-11-30 18:10:26] 2025-11-30 17:09:42,440 | INFO     | monitor loop #5297: job 0:6899596296 is in state 'finished'
[2025-11-30 18:10:26] 2025-11-30 17:09:42,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:10:26] 2025-11-30 17:09:42,442 | INFO     | time since job start (78525s) is within the limit (172800.0s)
[2025-11-30 18:10:26] 2025-11-30 17:09:43,651 | INFO     | PID=21246 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 18:10:26] 2025-11-30 17:09:43,651 | INFO     | .. there are 9 such processes running
[2025-11-30 18:10:26] 2025-11-30 17:09:44,652 | INFO     | time since job start (78527s) is within the limit (172800.0s)
[2025-11-30 18:10:26] 2025-11-30 17:09:44,952 | INFO     | monitor loop #5298: job 0:6899596296 is in state 'finished'
[2025-11-30 18:10:26] 2025-11-30 17:09:44,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:10:26] 2025-11-30 17:09:46,662 | INFO     | time since job start (78529s) is within the limit (172800.0s)
[2025-11-30 18:10:26] 2025-11-30 17:09:47,457 | INFO     | monitor loop #5299: job 0:6899596296 is in state 'finished'
[2025-11-30 18:10:26] 2025-11-30 17:09:47,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,669 | INFO     | time since job start (78531s) is within the limit (172800.0s)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,670 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 18:10:26] 2025-11-30 17:09:48,671 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-30 18:10:26] 2025-11-30 17:09:48,673 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6899596296/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,673 | INFO     | extracted standard info from prmon json
[2025-11-30 18:10:26] 2025-11-30 17:09:48,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 18:10:26] 2025-11-30 17:09:48,673 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 18:10:26] 2025-11-30 17:09:48,696 | INFO     | fitting pss+swap vs Time
[2025-11-30 18:10:26] 2025-11-30 17:09:48,698 | INFO     | sum of square deviations: 647248160121.9153
[2025-11-30 18:10:26] 2025-11-30 17:09:48,752 | INFO     | sum of deviations: 2635656523106.703
[2025-11-30 18:10:26] 2025-11-30 17:09:48,753 | INFO     | mean x: 1764483508.5352113
[2025-11-30 18:10:26] 2025-11-30 17:09:48,753 | INFO     | mean y: 2835764.317683881
[2025-11-30 18:10:26] 2025-11-30 17:09:48,753 | INFO     | intersect: -7182310143.720205
[2025-11-30 18:10:26] 2025-11-30 17:09:48,755 | INFO     | chi2: 22.42919960113264
[2025-11-30 18:10:26] 2025-11-30 17:09:48,756 | INFO     | sum of square deviations: 639681435704.0363
[2025-11-30 18:10:26] 2025-11-30 17:09:48,814 | INFO     | sum of deviations: 3055761564100.4
[2025-11-30 18:10:26] 2025-11-30 17:09:48,815 | INFO     | mean x: 1764483356.0392773
[2025-11-30 18:10:26] 2025-11-30 17:09:48,815 | INFO     | mean y: 2844230.0322073842
[2025-11-30 18:10:26] 2025-11-30 17:09:48,815 | INFO     | intersect: -8426101990.589971
[2025-11-30 18:10:26] 2025-11-30 17:09:48,816 | INFO     | chi2: 19.25926858352466
[2025-11-30 18:10:26] 2025-11-30 17:09:48,817 | INFO     | current chi2=19.25926858352466 (change=14.133054562713445 %)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,817 | INFO     | right removable region: 1272
[2025-11-30 18:10:26] 2025-11-30 17:09:48,818 | INFO     | sum of square deviations: 639680628674.0361
[2025-11-30 18:10:26] 2025-11-30 17:09:48,906 | INFO     | sum of deviations: 2099141949943.939
[2025-11-30 18:10:26] 2025-11-30 17:09:48,907 | INFO     | mean x: 1764483661.0392773
[2025-11-30 18:10:26] 2025-11-30 17:09:48,907 | INFO     | mean y: 2846575.6810683426
[2025-11-30 18:10:26] 2025-11-30 17:09:48,907 | INFO     | intersect: -5787389218.321093
[2025-11-30 18:10:26] 2025-11-30 17:09:48,908 | INFO     | chi2: 17.66605809726134
[2025-11-30 18:10:26] 2025-11-30 17:09:48,908 | INFO     | current chi2=17.66605809726134 (change=21.236341860503877 %)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,909 | INFO     | left removable region: 10
[2025-11-30 18:10:26] 2025-11-30 17:09:48,910 | INFO     | sum of square deviations: 623241121128.5494
[2025-11-30 18:10:26] 2025-11-30 17:09:48,973 | INFO     | sum of deviations: 2144602167886.6936
[2025-11-30 18:10:26] 2025-11-30 17:09:48,973 | INFO     | mean x: 1764483630.548336
[2025-11-30 18:10:26] 2025-11-30 17:09:48,973 | INFO     | mean y: 2866701.209984152
[2025-11-30 18:10:26] 2025-11-30 17:09:48,973 | INFO     | intersect: -6068804905.474703
[2025-11-30 18:10:26] 2025-11-30 17:09:48,981 | INFO     | chi2: 10.099008727293192
[2025-11-30 18:10:26] 2025-11-30 17:09:48,981 | INFO     | current memory leak: 3.44 B/s (using 1262 data points, chi2=10.10)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | ..............................
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | . Timing measurements:
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | . get job = 0 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | . initial setup = 13 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | . payload setup = 138 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,983 | INFO     | . stage-in = 0 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,984 | INFO     | . payload execution = 78089 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,984 | INFO     | . stage-out = 5 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,984 | INFO     | . log creation = 2 s
[2025-11-30 18:10:26] 2025-11-30 17:09:48,984 | INFO     | ..............................
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | 
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | job summary report
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | --------------------------------------------------
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | PanDA job id: 6899596296
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | task id: 47556173
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | errors: (none)
[2025-11-30 18:10:26] 2025-11-30 17:09:49,118 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | pilot state: finished 
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | transexitcode: 0
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | exeerrorcode: 0
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | exeerrordiag: 
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | exitcode: 0
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | exitmsg: OK
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | cpuconsumptiontime: 293663 s
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | nevents: 1000
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | neventsw: 0
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | pid: 27813
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | pgrp: 27813
[2025-11-30 18:10:26] 2025-11-30 17:09:49,119 | INFO     | corecount: 8
[2025-11-30 18:10:26] 2025-11-30 17:09:49,120 | INFO     | event service: False
[2025-11-30 18:10:26] 2025-11-30 17:09:49,120 | INFO     | sizes: {0: 2283488, 1: 2284173, 2: 2284201, 3: 2284400, 14: 2284400, 24: 2284428, 35: 2284584, 46: 2284612, 56: 2284640, 67: 2284668, 78: 2284696, 89: 2285032, 99:
[2025-11-30 18:10:26] 2025-11-30 17:09:49,120 | INFO     | --------------------------------------------------
[2025-11-30 18:10:26] 2025-11-30 17:09:49,120 | INFO     | 
[2025-11-30 18:10:26] 2025-11-30 17:09:49,120 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-30 18:10:26] 2025-11-30 17:09:49,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 18:10:26] 2025-11-30 17:09:49,717 | INFO     | job 6899596296 has completed (purged errors)
[2025-11-30 18:10:26] 2025-11-30 17:09:49,718 | INFO     | overall cleanup function is called
[2025-11-30 18:10:26] 2025-11-30 17:09:50,740 | INFO     | --- collectZombieJob: --- 10, [27813]
[2025-11-30 18:10:26] 2025-11-30 17:09:50,740 | INFO     | zombie collector waiting for pid 27813
[2025-11-30 18:10:26] 2025-11-30 17:09:50,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 18:10:26] 2025-11-30 17:09:50,740 | INFO     | collected zombie processes
[2025-11-30 18:10:26] 2025-11-30 17:09:50,740 | INFO     | will attempt to kill all subprocesses of pid=27813
[2025-11-30 18:10:26] 2025-11-30 17:09:50,859 | INFO     | process IDs to be killed: [27813] (in reverse order)
[2025-11-30 18:10:26] 2025-11-30 17:09:51,547 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 18:10:26] 2025-11-30 17:09:51,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 18:10:26] 2025-11-30 17:09:51,550 | INFO     | did not find any defunct processes belonging to 27813
[2025-11-30 18:10:26] 2025-11-30 17:09:51,553 | INFO     | did not find any defunct processes belonging to 27813
[2025-11-30 18:10:26] 2025-11-30 17:09:51,598 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 18:10:26] 2025-11-30 17:09:51,598 | INFO     | ready for new job
[2025-11-30 18:10:26] 2025-11-30 17:09:51,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 18:10:26] 2025-11-30 17:09:51,603 | INFO     | ***************************************
[2025-11-30 18:10:26] 2025-11-30 17:09:51,603 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 18:10:26] 2025-11-30 17:09:51,603 | INFO     | ***************************************
[2025-11-30 18:10:26] 2025-11-30 17:09:51,603 | INFO     | 
[2025-11-30 18:10:26] 2025-11-30 17:09:51,604 | INFO     | pilot is running in a VM
[2025-11-30 18:10:26] 2025-11-30 17:09:51,604 | INFO     | architecture information:
[2025-11-30 18:10:26] 2025-11-30 17:09:51,617 | INFO     | executing command: cat /etc/os-release
[2025-11-30 18:10:26] 2025-11-30 17:09:51,723 | INFO     | cat /etc/os-release:
[2025-11-30 18:10:26] NAME="CentOS Linux"
[2025-11-30 18:10:26] VERSION="7 (Core)"
[2025-11-30 18:10:26] ID="centos"
[2025-11-30 18:10:26] ID_LIKE="rhel fedora"
[2025-11-30 18:10:26] VERSION_ID="7"
[2025-11-30 18:10:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 18:10:26] ANSI_COLOR="0;31"
[2025-11-30 18:10:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 18:10:26] HOME_URL="https://www.centos.org/"
[2025-11-30 18:10:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 18:10:26] 
[2025-11-30 18:10:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 18:10:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 18:10:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 18:10:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 18:10:26] 
[2025-11-30 18:10:26] 2025-11-30 17:09:51,723 | INFO     | ***************************************
[2025-11-30 18:10:26] 2025-11-30 17:09:52,227 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-30 18:10:26] 2025-11-30 17:09:52,399 | INFO     | sufficient remaining disk space (488640610304 B)
[2025-11-30 18:10:26] 2025-11-30 17:09:52,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 18:10:26] 2025-11-30 17:09:52,400 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 18:10:26] 2025-11-30 17:09:52,400 | INFO     | update_server=False
[2025-11-30 18:10:26] 2025-11-30 17:09:52,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 18:10:26] 2025-11-30 17:09:52,478 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 18:10:26] 2025-11-30 17:09:52,478 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 18:10:26] 2025-11-30 17:09:52,478 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:10:26] 2025-11-30 17:09:52,478 | INFO     | will abort loop
[2025-11-30 18:10:26] 2025-11-30 17:09:52,493 | INFO     | all data control threads have been joined
[2025-11-30 18:10:26] 2025-11-30 17:09:52,531 | INFO     | all payload control threads have been joined
[2025-11-30 18:10:26] 2025-11-30 17:09:52,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 18:10:26] 2025-11-30 17:09:53,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 18:10:26] 2025-11-30 17:09:53,406 | INFO     | [job] retrieve thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,484 | INFO     | [job] job monitor thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,499 | INFO     | [data] control thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,537 | INFO     | [payload] control thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,549 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,560 | INFO     | [data] copytool_in thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,608 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,863 | INFO     | [job] validate thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:53,997 | INFO     | all job control threads have been joined
[2025-11-30 18:10:26] 2025-11-30 17:09:54,054 | INFO     | [payload] validate_post thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:54,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:10:26] 2025-11-30 17:09:54,365 | INFO     | [payload] failed_post thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:54,654 | INFO     | [data] copytool_out thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:54,883 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:55,003 | INFO     | [job] control thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:55,137 | INFO     | [job] queue monitor thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:09:57,121 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 18:10:26] 2025-11-30 17:10:12,948 | INFO     | [monitor] cgroup control has ended
[2025-11-30 18:10:26] 2025-11-30 17:10:13,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402494662464)>', '<ExcThread(monitor, started 140402036287232)>']
[2025-11-30 18:10:26] 2025-11-30 17:10:18,953 | INFO     | all workflow threads have been joined
[2025-11-30 18:10:26] 2025-11-30 17:10:18,953 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 18:10:26] 2025-11-30 17:10:18,953 | INFO     | traces error code: 0
[2025-11-30 18:10:26] 2025-11-30 17:10:18,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 18:10:26] 2025-11-30 17:10:21,839 | INFO     | PID=21246 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 18:10:26] 2025-11-30 17:10:21,839 | INFO     | .. there are 9 such processes running
[2025-11-30 18:10:26] 2025-11-30 17:10:21,841 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 18:10:26] 2025-11-30 17:10:21,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 18:10:26] 2025-11-30 17:10:21,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 18:10:26] 2025-11-30 17:10:21,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 18:10:26] 2025-11-30 17:10:21,841 | INFO     | [monitor] control thread has ended
[2025-11-30 18:10:26] 2025-11-30 17:10:22,233 [wrapper] ==== pilot stdout END ====
[2025-11-30 18:10:26] 2025-11-30 17:10:22,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 18:10:26] 2025-11-30 17:10:22,380 [wrapper] pilotpid: 21246
[2025-11-30 18:10:26] 2025-11-30 17:10:22,454 [wrapper] Pilot exit status: 0
[2025-11-30 18:10:26] 2025-11-30 17:10:22,798 [wrapper] pandaids: 6899596296
[2025-11-30 18:10:26] 2025-11-30 17:10:23,662 [wrapper] cleanup supervisor_pilot 25512 21247
[2025-11-30 18:10:26] 2025-11-30 17:10:23,724 [wrapper] Test setup, not cleaning
[2025-11-30 18:10:26] 2025-11-30 17:10:23,814 [wrapper] apfmon messages muted
[2025-11-30 18:10:26] 2025-11-30 17:10:23,894 [wrapper] ==== wrapper stdout END ====
[2025-11-30 18:10:26] 2025-11-30 17:10:23,973 [wrapper] ==== wrapper stderr END ====
[2025-11-30 18:10:26]  *** Error codes and diagnostics ***
[2025-11-30 18:10:26]     "exeErrorCode": 0,
[2025-11-30 18:10:26]     "exeErrorDiag": "",
[2025-11-30 18:10:26]     "pilotErrorCode": 0,
[2025-11-30 18:10:26]     "pilotErrorDiag": "",
[2025-11-30 18:10:26]  *** Listing of results directory ***
[2025-11-30 18:10:26] total 1336668
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:46 queuedata.json
[2025-11-30 18:10:26] -rwx------. 1 boinc boinc     36292 Nov 27 09:46 runpilot2-wrapper.sh
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc       100 Nov 29 20:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 18:10:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 20:16 run_atlas
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc       105 Nov 29 20:16 job.xml
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc      6391 Nov 29 20:16 init_data.xml
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc 410710034 Nov 29 20:16 EVNT.47483658._003408.pool.root.1
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc     15847 Nov 29 20:16 start_atlas.sh
[2025-11-30 18:10:26] drwxrwx--x. 2 boinc boinc        68 Nov 29 20:16 shared
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc    590102 Nov 29 20:16 input.tar.gz
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc         0 Nov 29 20:16 boinc_lockfile
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc      2787 Nov 29 20:16 pandaJob.out
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc    991826 Nov 29 20:20 agis_schedconf.cvmfs.json
[2025-11-30 18:10:26] drwx------. 5 boinc boinc      4096 Nov 29 20:20 pilot3
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc       533 Nov 30 17:44 boinc_task_state.xml
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc 928408313 Nov 30 18:07 HITS.47556173._003642.pool.root.1
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc      1028 Nov 30 18:08 memory_monitor_summary.json
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc   1516240 Nov 30 18:08 agis_ddmendpoints.agis.ALL.json
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc   2384628 Nov 30 18:08 log.47556173._003642.job.log.tgz.1
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc      8627 Nov 30 18:09 heartbeat.json
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc        29 Nov 30 18:10 wrapper_checkpoint.txt
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc      8192 Nov 30 18:10 boinc_mmap_file
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc        95 Nov 30 18:10 pilot_heartbeat.json
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc       820 Nov 30 18:10 pilotlog.txt
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc  10474943 Nov 30 18:10 log.47556173._003642.job.log.1
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc       353 Nov 30 18:10 output.list
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc       620 Nov 30 18:10 runtime_log
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc  12881920 Nov 30 18:10 result.tar.gz
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc       662 Nov 30 18:10 YloMDmLpmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9ZKKDmKP9FDo.diag
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc      8817 Nov 30 18:10 runtime_log.err
[2025-11-30 18:10:26] -rw-r--r--. 1 boinc boinc     21490 Nov 30 18:10 stderr.txt
[2025-11-30 18:10:26] HITS file was successfully produced:
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc 928408313 Nov 30 18:07 shared/HITS.pool.root.1
[2025-11-30 18:10:26]  *** Contents of shared directory: ***
[2025-11-30 18:10:26] total 1320916
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc 410710034 Nov 29 20:16 ATLAS.root_0
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc     15847 Nov 29 20:16 start_atlas.sh
[2025-11-30 18:10:26] -rw-r--r--. 2 boinc boinc    590102 Nov 29 20:16 input.tar.gz
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc 928408313 Nov 30 18:07 HITS.pool.root.1
[2025-11-30 18:10:26] -rw-------. 1 boinc boinc  12881920 Nov 30 18:10 result.tar.gz
18:10:28 (17416): run_atlas exited; CPU time 294188.931561
18:10:28 (17416): called boinc_finish(0)

</stderr_txt>
]]>

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