Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:16:36 (411953): wrapper (7.7.26015): starting
04:16:36 (411953): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 04:16:36] Arguments: --nthreads 12
[2025-11-28 04:16:36] Threads: 12
[2025-11-28 04:16:36] Checking for CVMFS
[2025-11-28 04:16:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:16:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:16:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:16:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:16:36] 2.13.3.0 321434 350 46024 153395 2 71 3271747 4096000 0 130560 0 234424 99.981 14731 375 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-28 04:16:36] CVMFS is ok
[2025-11-28 04:16:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 04:16:36] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-28 04:16:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-28 04:16:36] Further information can be found at the LHC@home message board.
[2025-11-28 04:16:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:16:36] Checking for apptainer binary...
[2025-11-28 04:16:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 04:16:36] Running /usr/bin/apptainer --version
[2025-11-28 04:16:37] apptainer version 1.4.2
[2025-11-28 04:16:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:16:37] matisse
[2025-11-28 04:16:37] apptainer works
[2025-11-28 04:16:37] Set ATHENA_PROC_NUMBER=12
[2025-11-28 04:16:37] Set ATHENA_CORE_NUMBER=12
[2025-11-28 04:16:37] Starting ATLAS job with PandaID=6899576133
[2025-11-28 04:16:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:08:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:08:04] 2025-11-28 06:07:07,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,828 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:08:04] 2025-11-28 06:07:07,829 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3164.6311249999994
[2025-11-28 07:08:04] 2025-11-28 06:07:07,830 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6899576133/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,830 | INFO     | extracted standard info from prmon json
[2025-11-28 07:08:04] 2025-11-28 06:07:07,830 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:08:04] 2025-11-28 06:07:07,830 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | sum of square deviations: 1470301158.8511853
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | sum of deviations: 37310490159.67261
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | mean x: 1764304912.9702382
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | mean y: 3513424.9345238097
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | intersect: -44767641584.881195
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | chi2: 3.259799450184567
[2025-11-28 07:08:04] 2025-11-28 06:07:07,832 | INFO     | sum of square deviations: 1342898082.6257737
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | sum of deviations: 73478504865.04297
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | mean x: 1764304760.4723926
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | mean y: 3555991.45398773
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | intersect: -96532791481.9943
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | chi2: 1.4969168328028015
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | current chi2=1.4969168328028015 (change=54.07948078775069 %)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | sum of square deviations: 1223076543.898728
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | sum of deviations: 69013518027.07597
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | mean x: 1764304607.9746835
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | mean y: 3550308.518987342
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | intersect: -99549391390.11273
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | chi2: 1.4977231553262194
[2025-11-28 07:08:04] 2025-11-28 06:07:07,833 | INFO     | current chi2=1.4977231553262194 (change=-0.053865552564339225 %)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | right removable region: 157
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | sum of square deviations: 1342870022.7116535
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | sum of deviations: -67218006.92637825
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | mean x: 1764305065.4846625
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | mean y: 3557596.4294478525
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | intersect: 91870737.7657312
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | chi2: 1.8515393813590615
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | current chi2=1.8515393813590615 (change=43.20081926346025 %)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | sum of square deviations: 1223020424.0
[2025-11-28 07:08:04] 2025-11-28 06:07:07,834 | INFO     | sum of deviations: -6703691579.0
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | mean x: 1764305218.0
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | mean y: 3566025.7974683545
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | intersect: 9674179697.161928
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | chi2: 1.835554230930601
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | current chi2=1.835554230930601 (change=0.8633437986464604 %)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | left removable region: 20
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | sum of square deviations: 797299558.2043804
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | sum of deviations: 16304031379.131384
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | mean x: 1764305187.518248
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | mean y: 3622537.5474452553
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | intersect: -36074770888.939415
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | chi2: 0.018608978973741096
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | current memory leak: 20.45 B/s (using 137 data points, chi2=0.02)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | could have reported an average CPU frequency of 3893 MHz (9 samples)
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | ..............................
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | . Timing measurements:
[2025-11-28 07:08:04] 2025-11-28 06:07:07,835 | INFO     | . get job = 0 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . initial setup = 1 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . payload setup = 2 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . stage-in = 0 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . payload execution = 10199 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . stage-out = 0 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | . log creation = 0 s
[2025-11-28 07:08:04] 2025-11-28 06:07:07,836 | INFO     | ..............................
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | 
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | job summary report
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | --------------------------------------------------
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | PanDA job id: 6899576133
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | task id: 47556173
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | errors: (none)
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | pilot state: finished 
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | transexitcode: 0
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | exeerrorcode: 0
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | exeerrordiag: 
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | exitcode: 0
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | exitmsg: OK
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | cpuconsumptiontime: 119931 s
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | nevents: 1000
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | neventsw: 0
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | pid: 422288
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | pgrp: 422288
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | corecount: 12
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | event service: False
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | sizes: {0: 2284323, 2: 2284585, 11: 2284613, 10206: 2314370, 10207: 2323434, 10214: 2323688}
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | --------------------------------------------------
[2025-11-28 07:08:04] 2025-11-28 06:07:08,120 | INFO     | 
[2025-11-28 07:08:04] 2025-11-28 06:07:08,121 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-28 07:08:04] 2025-11-28 06:07:08,131 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,131 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | job 6899576133 has completed (purged errors)
[2025-11-28 07:08:04] 2025-11-28 06:07:08,132 | INFO     | overall cleanup function is called
[2025-11-28 07:08:04] 2025-11-28 06:07:09,144 | INFO     | --- collectZombieJob: --- 10, [422288]
[2025-11-28 07:08:04] 2025-11-28 06:07:09,144 | INFO     | zombie collector waiting for pid 422288
[2025-11-28 07:08:04] 2025-11-28 06:07:09,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:08:04] 2025-11-28 06:07:09,144 | INFO     | collected zombie processes
[2025-11-28 07:08:04] 2025-11-28 06:07:09,145 | INFO     | will attempt to kill all subprocesses of pid=422288
[2025-11-28 07:08:04] 2025-11-28 06:07:09,202 | INFO     | process IDs to be killed: [422288] (in reverse order)
[2025-11-28 07:08:04] 2025-11-28 06:07:09,228 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:08:04] 2025-11-28 06:07:09,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:08:04] 2025-11-28 06:07:09,229 | INFO     | did not find any defunct processes belonging to 422288
[2025-11-28 07:08:04] 2025-11-28 06:07:09,231 | INFO     | did not find any defunct processes belonging to 422288
[2025-11-28 07:08:04] 2025-11-28 06:07:09,232 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:08:04] 2025-11-28 06:07:09,232 | INFO     | ready for new job
[2025-11-28 07:08:04] 2025-11-28 06:07:09,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:08:04] 2025-11-28 06:07:09,233 | INFO     | ***************************************
[2025-11-28 07:08:04] 2025-11-28 06:07:09,233 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:08:04] 2025-11-28 06:07:09,233 | INFO     | ***************************************
[2025-11-28 07:08:04] 2025-11-28 06:07:09,233 | INFO     | 
[2025-11-28 07:08:04] 2025-11-28 06:07:09,233 | INFO     | architecture information:
[2025-11-28 07:08:04] 2025-11-28 06:07:09,234 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:08:04] 2025-11-28 06:07:09,240 | INFO     | cat /etc/os-release:
[2025-11-28 07:08:04] NAME="CentOS Linux"
[2025-11-28 07:08:04] VERSION="7 (Core)"
[2025-11-28 07:08:04] ID="centos"
[2025-11-28 07:08:04] ID_LIKE="rhel fedora"
[2025-11-28 07:08:04] VERSION_ID="7"
[2025-11-28 07:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:08:04] ANSI_COLOR="0;31"
[2025-11-28 07:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:08:04] HOME_URL="https://www.centos.org/"
[2025-11-28 07:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:08:04] 
[2025-11-28 07:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:08:04] 
[2025-11-28 07:08:04] 2025-11-28 06:07:09,240 | INFO     | ***************************************
[2025-11-28 07:08:04] 2025-11-28 06:07:09,743 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | INFO     | sufficient remaining disk space (448707690496 B)
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | INFO     | update_server=False
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:08:04] 2025-11-28 06:07:09,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:08:04] 2025-11-28 06:07:10,043 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 07:08:04] 2025-11-28 06:07:10,043 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 07:08:04] 2025-11-28 06:07:10,043 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:08:04] 2025-11-28 06:07:10,043 | INFO     | will abort loop
[2025-11-28 07:08:04] 2025-11-28 06:07:10,296 | INFO     | all job control threads have been joined
[2025-11-28 07:08:04] 2025-11-28 06:07:10,471 | INFO     | all data control threads have been joined
[2025-11-28 07:08:04] 2025-11-28 06:07:10,756 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:10,757 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:10,829 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:10,998 | INFO     | all payload control threads have been joined
[2025-11-28 07:08:04] 2025-11-28 06:07:11,009 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,048 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,078 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,301 | INFO     | [job] control thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,473 | INFO     | [data] control thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,670 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:08:04] 2025-11-28 06:07:11,706 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:11,757 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:12,003 | INFO     | [payload] control thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:12,181 | INFO     | [job] validate thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:12,187 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:12,229 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:15,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:20,570 | INFO     | job.realtimelogging is not enabled
[2025-11-28 07:08:04] 2025-11-28 06:07:21,575 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:08:04] 2025-11-28 06:07:40,395 | INFO     | PID=415744 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 07:08:04] 2025-11-28 06:07:40,395 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:08:04] 2025-11-28 06:07:40,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:08:04] 2025-11-28 06:07:40,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:08:04] 2025-11-28 06:07:57,758 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:08:04] 2025-11-28 06:07:59,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128375242819392)>', '<ExcThread(monitor, started 128374609532672)>']
[2025-11-28 07:08:04] 2025-11-28 06:07:59,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:08:04] 2025-11-28 06:07:59,475 | INFO     | [monitor] control thread has ended
[2025-11-28 07:08:04] 2025-11-28 06:08:04,186 | INFO     | all workflow threads have been joined
[2025-11-28 07:08:04] 2025-11-28 06:08:04,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:08:04] 2025-11-28 06:08:04,186 | INFO     | traces error code: 0
[2025-11-28 07:08:04] 2025-11-28 06:08:04,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:08:04] 2025-11-28 06:08:04,227 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:08:04] 2025-11-28 06:08:04,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:08:04] 2025-11-28 06:08:04,230 [wrapper] pilotpid: 415744
[2025-11-28 07:08:04] 2025-11-28 06:08:04,231 [wrapper] Pilot exit status: 0
[2025-11-28 07:08:04] 2025-11-28 06:08:04,235 [wrapper] pandaids: 6899576133
[2025-11-28 07:08:04] 2025-11-28 06:08:04,253 [wrapper] cleanup supervisor_pilot  448077 415745
[2025-11-28 07:08:04] 2025-11-28 06:08:04,254 [wrapper] Test setup, not cleaning
[2025-11-28 07:08:04] 2025-11-28 06:08:04,256 [wrapper] apfmon messages muted
[2025-11-28 07:08:04] 2025-11-28 06:08:04,257 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:08:04] 2025-11-28 06:08:04,258 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:08:04]  *** Error codes and diagnostics ***
[2025-11-28 07:08:04]     "exeErrorCode": 0,
[2025-11-28 07:08:04]     "exeErrorDiag": "",
[2025-11-28 07:08:04]     "pilotErrorCode": 0,
[2025-11-28 07:08:04]     "pilotErrorDiag": "",
[2025-11-28 07:08:04]  *** Listing of results directory ***
[2025-11-28 07:08:04] total 1319392
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-11-28 07:08:04] -rwx------ 1 boinc boinc     36292 Nov 27 09:46 runpilot2-wrapper.sh
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:46 queuedata.json
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc       100 Nov 28 04:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:08:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 04:16 run_atlas
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc       105 Nov 28 04:16 job.xml
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc 411823477 Nov 28 04:16 EVNT.47483658._003378.pool.root.1
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc    590105 Nov 28 04:16 input.tar.gz
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:16 start_atlas.sh
[2025-11-28 07:08:04] drwxrwx--x 2 boinc boinc      4096 Nov 28 04:16 shared
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:16 boinc_setup_complete
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc      9642 Nov 28 04:16 init_data.xml
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc         0 Nov 28 04:16 boinc_lockfile
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc      2787 Nov 28 04:16 pandaJob.out
[2025-11-28 07:08:04] -rw------- 1 boinc boinc    991850 Nov 28 04:16 agis_schedconf.cvmfs.json
[2025-11-28 07:08:04] -rw------- 1 boinc boinc   1516240 Nov 28 04:16 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:08:04] drwx------ 5 boinc boinc      4096 Nov 28 04:16 pilot3
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc       532 Nov 28 07:04 boinc_task_state.xml
[2025-11-28 07:08:04] -rw------- 1 boinc boinc 928529895 Nov 28 07:06 HITS.47556173._003344.pool.root.1
[2025-11-28 07:08:04] -rw------- 1 boinc boinc      1028 Nov 28 07:06 memory_monitor_summary.json
[2025-11-28 07:08:04] -rw------- 1 boinc boinc   1917265 Nov 28 07:07 log.47556173._003344.job.log.tgz.1
[2025-11-28 07:08:04] -rw------- 1 boinc boinc        95 Nov 28 07:07 pilot_heartbeat.json
[2025-11-28 07:08:04] -rw------- 1 boinc boinc      8551 Nov 28 07:07 heartbeat.json
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc      8192 Nov 28 07:07 boinc_mmap_file
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc        29 Nov 28 07:07 wrapper_checkpoint.txt
[2025-11-28 07:08:04] -rw------- 1 boinc boinc      5013 Nov 28 07:08 pilotlog.txt
[2025-11-28 07:08:04] -rw------- 1 boinc boinc   1471477 Nov 28 07:08 log.47556173._003344.job.log.1
[2025-11-28 07:08:04] -rw------- 1 boinc boinc       353 Nov 28 07:08 output.list
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc       620 Nov 28 07:08 runtime_log
[2025-11-28 07:08:04] -rw------- 1 boinc boinc   3409920 Nov 28 07:08 result.tar.gz
[2025-11-28 07:08:04] -rw------- 1 boinc boinc       653 Nov 28 07:08 sDkKDmCpmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSZKKDmfkGMGn.diag
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc      8895 Nov 28 07:08 runtime_log.err
[2025-11-28 07:08:04] -rw-r--r-- 1 boinc boinc     21341 Nov 28 07:08 stderr.txt
[2025-11-28 07:08:04] HITS file was successfully produced:
[2025-11-28 07:08:04] -rw------- 1 boinc boinc 928529895 Nov 28 07:06 shared/HITS.pool.root.1
[2025-11-28 07:08:04]  *** Contents of shared directory: ***
[2025-11-28 07:08:04] total 1312876
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc 411823477 Nov 28 04:16 ATLAS.root_0
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc    590105 Nov 28 04:16 input.tar.gz
[2025-11-28 07:08:04] -rw-r--r-- 2 boinc boinc     15847 Nov 28 04:16 start_atlas.sh
[2025-11-28 07:08:04] -rw------- 1 boinc boinc 928529895 Nov 28 07:06 HITS.pool.root.1
[2025-11-28 07:08:04] -rw------- 1 boinc boinc   3409920 Nov 28 07:08 result.tar.gz
07:08:05 (411953): run_atlas exited; CPU time 119780.769808
07:08:05 (411953): called boinc_finish(0)

</stderr_txt>
]]>

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