Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:30 (2587467): wrapper (7.7.26015): starting
16:00:30 (2587467): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 16:00:30] Arguments: --nthreads 12
[2025-11-27 16:00:30] Threads: 12
[2025-11-27 16:00:30] Checking for CVMFS
[2025-11-27 16:00:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:00:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:00:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:00:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:00:31] 2.11.5.0 1829866 30208 223160 153390 3 415 33997827 45568000 25494 130560 0 272461940 99.763 196795692 29184 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-27 16:00:31] CVMFS is ok
[2025-11-27 16:00:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:00:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:00:31] Further information can be found at the LHC@home message board.
[2025-11-27 16:00:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:00:31] Checking for apptainer binary...
[2025-11-27 16:00:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:00:31] Running /usr/bin/apptainer --version
[2025-11-27 16:00:31] apptainer version 1.4.1-1.el9
[2025-11-27 16:00:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:00:32] wns0093.triumf.lcg
[2025-11-27 16:00:32] apptainer works
[2025-11-27 16:00:32] Set ATHENA_PROC_NUMBER=12
[2025-11-27 16:00:32] Set ATHENA_CORE_NUMBER=12
[2025-11-27 16:00:32] Starting ATLAS job with PandaID=6897864811
[2025-11-27 16:00:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:09:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . Timing measurements:
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . get job = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . initial setup = 4 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . payload setup = 38 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-in = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . payload execution = 175 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-out = 1 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . log creation = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864811/pilotlog.txt
[2025-11-27 16:09:05] 2025-11-28 00:08:08,296 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 16:09:05] - Log from pilotlog.txt -
[2025-11-27 16:09:05] 2025-11-28 00:08:08,227 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897864811/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,227 | INFO     | extracted standard info from prmon json
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | WARNING  | wrong length of table data, x=[1764288199.0, 1764288260.0, 1764288321.0], y=[1782.0, 610507.0, 705745.0] (must be same and length>=4)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | could have reported an average CPU frequency of 2709 MHz (4 samples)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . Timing measurements:
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . get job = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . initial setup = 4 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . payload setup = 38 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-in = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . payload execution = 175 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-out = 1 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . log creation = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864811/pilotlog.txt
[2025-11-27 16:09:05] 2025-11-28 00:08:08,296 | WARNING  | 
[2025-11-27 16:09:05] [begin log extracts]
[2025-11-27 16:09:05] - Log from pilotlog.txt -
[2025-11-27 16:09:05] 2025-11-28 00:08:08,227 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897864811/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,227 | INFO     | extracted standard info from prmon json
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 16:09:05] 2025-11-28 00:08:08,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | WARNING  | wrong length of table data, x=[1764288199.0, 1764288260.0, 1764288321.0], y=[1782.0, 610507.0, 705745.0] (must be same and length>=4)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | could have reported an average CPU frequency of 2709 MHz (4 samples)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . Timing measurements:
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . get job = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . initial setup = 4 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,254 | INFO     | . payload setup = 38 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-in = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . payload execution = 175 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . stage-out = 1 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | . log creation = 0 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | ..............................
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 16:09:05] 2025-11-28 00:08:08,255 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864811/pilotlog.txt
[2025-11-27 16:09:05] [end log extracts]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,296 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,297 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 16:09:05] 2025-11-28 00:08:08,376 | INFO     | time since job start (429s) is within the limit (172800.0s)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | 
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | job summary report
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | --------------------------------------------------
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | PanDA job id: 6897864811
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | task id: 47556161
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 16:05:30,460 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 16:09:05] 2025-11-28 00:08:08,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | pilot state: failed 
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | transexitcode: 65
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | exeerrorcode: 65
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | exitcode: 65
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | cpuconsumptiontime: 46 s
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | nevents: 0
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | neventsw: 0
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | pid: 2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | pgrp: 2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | corecount: 12
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | event service: False
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | sizes: {0: 2284262, 11: 2284262, 22: 2284290, 31: 2284580, 33: 2284608, 218: 2310057, 219: 2310161, 221: 2314507, 367: 2314645}
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | --------------------------------------------------
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | 
[2025-11-27 16:09:05] 2025-11-28 00:08:08,487 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 16:09:05] 2025-11-28 00:08:08,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | job 6897864811 has completed (purged errors)
[2025-11-27 16:09:05] 2025-11-28 00:08:08,505 | INFO     | overall cleanup function is called
[2025-11-27 16:09:05] 2025-11-28 00:08:09,513 | INFO     | --- collectZombieJob: --- 10, [2602401]
[2025-11-27 16:09:05] 2025-11-28 00:08:09,513 | INFO     | zombie collector waiting for pid 2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:09,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:09:05] 2025-11-28 00:08:09,513 | INFO     | collected zombie processes
[2025-11-27 16:09:05] 2025-11-28 00:08:09,514 | INFO     | will attempt to kill all subprocesses of pid=2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:09,794 | INFO     | process IDs to be killed: [2602401] (in reverse order)
[2025-11-27 16:09:05] 2025-11-28 00:08:10,610 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:09:05] 2025-11-28 00:08:10,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:09:05] 2025-11-28 00:08:10,640 | INFO     | did not find any defunct processes belonging to 2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:10,693 | INFO     | did not find any defunct processes belonging to 2602401
[2025-11-27 16:09:05] 2025-11-28 00:08:10,723 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:09:05] 2025-11-28 00:08:10,724 | INFO     | ready for new job
[2025-11-27 16:09:05] 2025-11-28 00:08:10,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:09:05] 2025-11-28 00:08:10,725 | INFO     | ***************************************
[2025-11-27 16:09:05] 2025-11-28 00:08:10,726 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:09:05] 2025-11-28 00:08:10,726 | INFO     | ***************************************
[2025-11-27 16:09:05] 2025-11-28 00:08:10,726 | INFO     | 
[2025-11-27 16:09:05] 2025-11-28 00:08:10,752 | INFO     | architecture information:
[2025-11-27 16:09:05] 2025-11-28 00:08:10,761 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:09:05] 2025-11-28 00:08:10,822 | INFO     | cat /etc/os-release:
[2025-11-27 16:09:05] NAME="CentOS Linux"
[2025-11-27 16:09:05] VERSION="7 (Core)"
[2025-11-27 16:09:05] ID="centos"
[2025-11-27 16:09:05] ID_LIKE="rhel fedora"
[2025-11-27 16:09:05] VERSION_ID="7"
[2025-11-27 16:09:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:09:05] ANSI_COLOR="0;31"
[2025-11-27 16:09:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:09:05] HOME_URL="https://www.centos.org/"
[2025-11-27 16:09:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:09:05] 
[2025-11-27 16:09:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:09:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:09:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:09:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:09:05] 
[2025-11-27 16:09:05] 2025-11-28 00:08:10,823 | INFO     | ***************************************
[2025-11-27 16:09:05] 2025-11-28 00:08:11,328 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 16:09:05] 2025-11-28 00:08:11,397 | INFO     | sufficient remaining disk space (1989091000320 B)
[2025-11-27 16:09:05] 2025-11-28 00:08:11,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:09:05] 2025-11-28 00:08:11,401 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:09:05] 2025-11-28 00:08:11,401 | INFO     | update_server=False
[2025-11-27 16:09:05] 2025-11-28 00:08:11,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:09:05] 2025-11-28 00:08:11,648 | INFO     | all payload control threads have been joined
[2025-11-27 16:09:05] 2025-11-28 00:08:11,662 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:09:05] 2025-11-28 00:08:11,662 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:09:05] 2025-11-28 00:08:11,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:09:05] 2025-11-28 00:08:11,663 | INFO     | will abort loop
[2025-11-27 16:09:05] 2025-11-28 00:08:12,091 | INFO     | all job control threads have been joined
[2025-11-27 16:09:05] 2025-11-28 00:08:12,294 | INFO     | all data control threads have been joined
[2025-11-27 16:09:05] 2025-11-28 00:08:12,408 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:12,445 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:12,654 | INFO     | [payload] control thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:12,668 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:12,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:09:05] 2025-11-28 00:08:12,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:09:05] 2025-11-28 00:08:12,858 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,097 | INFO     | [job] control thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,106 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,300 | INFO     | [data] control thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:09:05] 2025-11-28 00:08:13,738 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,806 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,807 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:13,807 | INFO     | [job] validate thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:14,505 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:14,865 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:16,823 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:09:05] 2025-11-28 00:08:42,449 | INFO     | PID=2595222 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:09:05] 2025-11-28 00:08:42,449 | INFO     | .. there are 49 such processes running
[2025-11-27 16:09:05] 2025-11-28 00:08:42,449 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:09:05] 2025-11-28 00:08:42,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:09:05] 2025-11-28 00:08:42,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:09:05] 2025-11-28 00:08:59,824 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:09:05] 2025-11-28 00:08:59,876 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487474902848)>', '<ExcThread(monitor, started 140487080003328)>']
[2025-11-27 16:09:05] 2025-11-28 00:09:00,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:09:05] 2025-11-28 00:09:00,564 | INFO     | [monitor] control thread has ended
[2025-11-27 16:09:05] 2025-11-28 00:09:04,902 | INFO     | all workflow threads have been joined
[2025-11-27 16:09:05] 2025-11-28 00:09:04,902 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:09:05] 2025-11-28 00:09:04,903 | INFO     | traces error code: 0
[2025-11-27 16:09:05] 2025-11-28 00:09:04,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:09:05] 2025-11-28 00:09:05,082 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:09:05] 2025-11-28 00:09:05,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:09:05] 2025-11-28 00:09:05,086 [wrapper] pilotpid: 2595222
[2025-11-27 16:09:05] 2025-11-28 00:09:05,088 [wrapper] Pilot exit status: 0
[2025-11-27 16:09:05] 2025-11-28 00:09:05,098 [wrapper] pandaids: 6897864811
[2025-11-27 16:09:05] 2025-11-28 00:09:05,161 [wrapper] cleanup supervisor_pilot 2595228 2595223
[2025-11-27 16:09:05] 2025-11-28 00:09:05,165 [wrapper] Test setup, not cleaning
[2025-11-27 16:09:05] 2025-11-28 00:09:05,180 [wrapper] apfmon messages muted
[2025-11-27 16:09:05] 2025-11-28 00:09:05,185 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:09:05] 2025-11-28 00:09:05,190 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:09:05]  *** Error codes and diagnostics ***
[2025-11-27 16:09:05]     "exeErrorCode": 65,
[2025-11-27 16:09:05]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 16:09:05]     "pilotErrorCode": 1305,
[2025-11-27 16:09:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 16:09:05]  *** Listing of results directory ***
[2025-11-27 16:09:05] total 405572
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-27 16:09:05] -rwx------. 1 boinc boinc     36292 Nov 25 09:01 runpilot2-wrapper.sh
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc      5112 Nov 25 09:02 queuedata.json
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc       100 Nov 27 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:09:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 16:00 run_atlas
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc       105 Nov 27 16:00 job.xml
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc      6596 Nov 27 16:00 init_data.xml
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc 411059454 Nov 27 16:00 EVNT.47483658._002347.pool.root.1
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc     15847 Nov 27 16:00 start_atlas.sh
[2025-11-27 16:09:05] drwxrwx--x. 2 boinc boinc      4096 Nov 27 16:00 shared
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc    590106 Nov 27 16:00 input.tar.gz
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc         0 Nov 27 16:00 boinc_lockfile
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc      2786 Nov 27 16:00 pandaJob.out
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc    991532 Nov 27 16:00 agis_schedconf.cvmfs.json
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc   1516240 Nov 27 16:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:09:05] drwx------. 5 boinc boinc      4096 Nov 27 16:01 pilot3
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc       524 Nov 27 16:05 boinc_task_state.xml
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc       999 Nov 27 16:05 memory_monitor_summary.json
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc     50236 Nov 27 16:05 log.47556161._003292.job.log.tgz.1
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc        95 Nov 27 16:08 pilot_heartbeat.json
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc     10342 Nov 27 16:08 heartbeat.json
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc        23 Nov 27 16:08 wrapper_checkpoint.txt
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc      8192 Nov 27 16:08 boinc_mmap_file
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc      5009 Nov 27 16:09 pilotlog.txt
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc    115207 Nov 27 16:09 log.47556161._003292.job.log.1
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc       186 Nov 27 16:09 output.list
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc       620 Nov 27 16:09 runtime_log
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc    184320 Nov 27 16:09 result.tar.gz
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc      8636 Nov 27 16:09 runtime_log.err
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc       645 Nov 27 16:09 jG0NDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1dJKDmrzYBKm.diag
[2025-11-27 16:09:05] -rw-r--r--. 1 boinc boinc     22501 Nov 27 16:09 stderr.txt
[2025-11-27 16:09:05] No HITS result produced
[2025-11-27 16:09:05]  *** Contents of shared directory: ***
[2025-11-27 16:09:05] total 402208
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc 411059454 Nov 27 16:00 ATLAS.root_0
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc     15847 Nov 27 16:00 start_atlas.sh
[2025-11-27 16:09:05] -rw-r--r--. 2 boinc boinc    590106 Nov 27 16:00 input.tar.gz
[2025-11-27 16:09:05] -rw-------. 1 boinc boinc    184320 Nov 27 16:09 result.tar.gz
16:09:06 (2587467): run_atlas exited; CPU time 55.755292
16:09:06 (2587467): called boinc_finish(0)

</stderr_txt>
]]>

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